Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g038110 Medicago truncatula HOM05D002880 ORTHO05D038078 1.8e-212 742.3 358 100.0
TPR.G18175 Trifolium pratense HOM05D002880 ORTHO05D003450 1.5e-41 174.5 161 60.2
Psat2g154720 Pisum sativum HOM05D002880 ORTHO05D003450 3.3e-41 173.3 164 58.5
Ca_25825_v3 Cicer arietinum L. HOM05D002880 ORTHO05D003450 7.4e-41 172.2 164 57.9
Medtr5g022000 Medicago truncatula HOM05D002880 ORTHO05D003450 1.3e-40 171.4 164 57.3
Lalb_Chr16g0377511 Lupinus albus HOM05D002880 ORTHO05D003450 2.8e-40 170.2 164 57.3
Lalb_Chr09g0321751 Lupinus albus HOM05D002880 ORTHO05D003450 6.2e-40 169.1 164 55.5
Lj2g0011330 Lotus japonicus HOM05D002880 ORTHO05D003450 1.1e-39 168.3 164 56.1
TPR.G18181 Trifolium pratense HOM05D002880 ORTHO05D003450 1.1e-39 168.3 110 75.5
arahy.Tifrunner.gnm1.ann1.E76U4D Arachis hypogaea HOM05D002880 ORTHO05D003450 1.4e-39 167.9 164 55.5
arahy.Tifrunner.gnm1.ann1.FN5NT6 Arachis hypogaea HOM05D002880 ORTHO05D003450 1.4e-39 167.9 164 55.5
Phvul.002G108900 Phaseolus vulgaris HOM05D002880 ORTHO05D003450 4.0e-39 166.4 164 55.5
Prupe.7G168000 Prunus persica HOM05D002880 ORTHO05D003450 5.3e-39 166.0 110 71.8
Glyma.01G166400 Glycine max HOM05D002880 ORTHO05D003450 6.9e-39 165.6 164 56.1
TWI09G0522 Tripterygium wilfordii HOM05D002880 ORTHO05D003450 6.9e-39 165.6 110 72.7
Glyma.11G077000 Glycine max HOM05D002880 ORTHO05D003450 1.2e-38 164.9 164 55.5
Manes.01G145600 Manihot esculenta HOM05D002880 ORTHO05D003450 1.2e-38 164.9 164 54.9
Potri.005G114300 Populus trichocarpa HOM05D002880 ORTHO05D003450 2.0e-38 164.1 164 54.3
Gohir.D03G009500 Gossypium hirsutum HOM05D002880 ORTHO05D003450 2.6e-38 163.7 110 70.9
Lj2C468G7 Lonicera japonica HOM05D002880 ORTHO05D003450 2.6e-38 163.7 164 54.3
Lalb_Chr09g0321741 Lupinus albus HOM05D002880 ORTHO05D003450 2.6e-38 163.7 110 70.9
COL.COLO4_21911 Corchorus olitorius HOM05D002880 ORTHO05D003450 3.4e-38 163.3 163 54.6
Gohir.A02G170600 Gossypium hirsutum HOM05D002880 ORTHO05D003450 3.4e-38 163.3 110 70.9
Gorai.003G009700 Gossypium raimondii HOM05D002880 ORTHO05D003450 3.4e-38 163.3 110 70.9
Duzib187G1438 Durio zibethinus HOM05D002880 ORTHO05D003450 5.8e-38 162.5 160 55.6
Gorai.007G195100 Gossypium raimondii HOM05D002880 ORTHO05D003450 5.8e-38 162.5 163 53.4
Duzib147G0886 Durio zibethinus HOM05D002880 ORTHO05D003450 7.6e-38 162.2 163 53.4
CANSAT01G1381 Cannabis sativa HOM05D002880 ORTHO05D003450 9.9e-38 161.8 110 70.0
Ciclev10024677m.g Citrus clementina HOM05D002880 ORTHO05D003450 9.9e-38 161.8 110 70.0
Gohir.A11G175500 Gossypium hirsutum HOM05D002880 ORTHO05D003450 9.9e-38 161.8 110 70.9
Gohir.D11G183100 Gossypium hirsutum HOM05D002880 ORTHO05D003450 9.9e-38 161.8 110 70.9
MD15G1245900 Malus domestica HOM05D002880 ORTHO05D003450 9.9e-38 161.8 110 69.1
Lsat_1_v5_gn_2_75940 Lactuca sativa HOM05D002880 ORTHO05D003450 1.3e-37 161.4 110 70.0
Thecc.01G019100 Theobroma cacao HOM05D002880 ORTHO05D003450 1.3e-37 161.4 164 53.0
vmacro21922 Vaccinium macrocarpon HOM05D002880 ORTHO05D003450 1.3e-37 161.4 128 64.1
vmacro23248 Vaccinium macrocarpon HOM05D002880 ORTHO05D003450 1.3e-37 161.4 128 64.1
Actinidia17445 Actinidia chinensis HOM05D002880 ORTHO05D003450 1.7e-37 161.0 111 67.6
Atru.chr1.3786 Acer truncatum HOM05D002880 ORTHO05D003450 2.2e-37 160.6 163 53.4
Sabra05G0093500 Salix brachista HOM05D002880 ORTHO05D003450 2.2e-37 160.6 164 53.7
Dinv40086 Davidia involucrata HOM05D002880 ORTHO05D003450 2.9e-37 160.2 163 54.0
FAN23G1788 Fragaria x ananassa HOM05D002880 ORTHO05D003450 2.9e-37 160.2 110 68.2
FAN26G2624 Fragaria x ananassa HOM05D002880 ORTHO05D003450 2.9e-37 160.2 110 68.2
FAN28G1007 Fragaria x ananassa HOM05D002880 ORTHO05D003450 2.9e-37 160.2 110 68.2
QL06p032715 Quercus lobata HOM05D002880 ORTHO05D003450 2.9e-37 160.2 161 56.5
CSS0038464 Camellia sinensis var. sinensis HOM05D002880 ORTHO05D003450 3.8e-37 159.8 110 68.2
CSS0040827 Camellia sinensis var. sinensis HOM05D002880 ORTHO05D003450 3.8e-37 159.8 110 68.2
MD02G1132600 Malus domestica HOM05D002880 ORTHO05D003450 3.8e-37 159.8 110 68.2
RcHm_v2.0_Chr2g0099461 Rosa chinensis HOM05D002880 ORTHO05D003450 3.8e-37 159.8 110 68.2
HanXRQChr14g0441401 Helianthus annuus HOM05D002880 ORTHO05D003450 6.4e-37 159.1 110 68.2
GSVIVG01018783001 Vitis vinifera HOM05D002880 ORTHO05D003450 6.4e-37 159.1 110 68.2
EL10Ac6g15479 Beta vulgaris HOM05D002880 ORTHO05D003450 8.4e-37 158.7 110 68.2
Migut.H01155 Erythranthe guttata HOM05D002880 ORTHO05D003450 8.4e-37 158.7 110 69.1
Sabra07G0049600 Salix brachista HOM05D002880 ORTHO05D003450 1.1e-36 158.3 162 54.3
Cpa.g.sc6.248 Carica papaya HOM05D002880 ORTHO05D003450 1.4e-36 157.9 160 54.4
MSTRG.2713 Avicennia marina HOM05D002880 ORTHO05D003450 1.9e-36 157.5 110 69.1
FvH4_1g11860 Fragaria vesca HOM05D002880 ORTHO05D003450 1.9e-36 157.5 110 67.3
FAN19G0100 Fragaria x ananassa HOM05D002880 ORTHO05D003450 1.9e-36 157.5 110 67.3
Potri.007G057900 Populus trichocarpa HOM05D002880 ORTHO05D003450 1.9e-36 157.5 164 52.4
Cc07_g10710 Coffea canephora HOM05D002880 ORTHO05D003450 2.4e-36 157.1 164 52.4
Rhsim10G0212300 Rhododendron simsii HOM05D002880 ORTHO05D003450 2.4e-36 157.1 161 54.0
SalBow3G1624 Salvia bowleyana HOM05D002880 ORTHO05D003450 2.4e-36 157.1 110 68.2
BcaB08g34776 Brassica carinata HOM05D002880 ORTHO05D003450 4.2e-36 156.4 110 69.1
A06p33500 Brassica napus HOM05D002880 ORTHO05D003450 4.2e-36 156.4 110 69.1
BraA06t26284Z Brassica rapa HOM05D002880 ORTHO05D003450 4.2e-36 156.4 110 69.1
Peaxi162Scf00083g00425 Petunia axillaris HOM05D002880 ORTHO05D003450 4.2e-36 156.4 110 66.4
AUR62029462 Chenopodium quinoa HOM05D002880 ORTHO05D003450 5.5e-36 156.0 110 66.4
PGR119G1290 Punica granatum HOM05D002880 ORTHO05D003450 5.5e-36 156.0 160 55.0
Sc07g0000970 Simmondsia chinensis HOM05D002880 ORTHO05D003450 5.5e-36 156.0 110 66.4
AT2G17930 Arabidopsis thaliana HOM05D002880 ORTHO05D003450 7.1e-36 155.6 110 69.1
HanXRQChr13g0414661 Helianthus annuus HOM05D002880 ORTHO05D003450 7.1e-36 155.6 111 65.8
QL06p032741 Quercus lobata HOM05D002880 ORTHO05D003450 7.1e-36 155.6 111 68.5
ECA238G3174 Erigeron canadensis HOM05D002880 ORTHO05D003450 9.3e-36 155.2 110 66.4
THA.LOC104819750 Tarenaya hassleriana HOM05D002880 ORTHO05D003450 9.3e-36 155.2 110 67.3
BcaB07g31700 Brassica carinata HOM05D002880 ORTHO05D003450 1.2e-35 154.8 110 68.2
BcaC01g02877 Brassica carinata HOM05D002880 ORTHO05D003450 1.2e-35 154.8 110 68.2
BcaC04g22939 Brassica carinata HOM05D002880 ORTHO05D003450 1.2e-35 154.8 110 68.2
A09p11620 Brassica napus HOM05D002880 ORTHO05D003450 1.2e-35 154.8 110 68.2
C03p58840 Brassica napus HOM05D002880 ORTHO05D003450 1.2e-35 154.8 110 68.2
C09p13660 Brassica napus HOM05D002880 ORTHO05D003450 1.2e-35 154.8 110 68.2
BolC9t54256H Brassica oleracea HOM05D002880 ORTHO05D003450 1.2e-35 154.8 110 68.2
BraA09t36808Z Brassica rapa HOM05D002880 ORTHO05D003450 1.2e-35 154.8 110 68.2
Sp3g31350 Schrenkiella parvula HOM05D002880 ORTHO05D003450 1.2e-35 154.8 110 68.2
Solyc02g083900.3 Solanum lycopersicum HOM05D002880 ORTHO05D003450 1.2e-35 154.8 110 66.4
Sopen02g028690 Solanum pennellii HOM05D002880 ORTHO05D003450 1.2e-35 154.8 110 66.4
SGA_v2.0_scaffold78G25389 Striga asiatica HOM05D002880 ORTHO05D003450 1.2e-35 154.8 110 68.2
Cfa006971 Carpinus fangiana HOM05D002880 ORTHO05D003450 1.6e-35 154.5 162 54.9
Hund16489 Selenicereus undatus HOM05D002880 ORTHO05D003450 1.6e-35 154.5 110 64.5
AL3G50950 Arabidopsis lyrata HOM05D002880 ORTHO05D003450 2.1e-35 154.1 110 68.2
BolC3t18143H Brassica oleracea HOM05D002880 ORTHO05D003450 2.7e-35 153.7 110 68.2
AUR62003370 Chenopodium quinoa HOM05D002880 ORTHO05D003450 2.7e-35 153.7 110 65.5
Nitab4.5_0003382g0060 Nicotiana tabacum HOM05D002880 ORTHO05D003450 2.7e-35 153.7 161 53.4
CAN.G1671.12 Capsicum annuum HOM05D002880 ORTHO05D003450 3.5e-35 153.3 161 52.8
CiPaw.07G058400 Carya illinoinensis HOM05D002880 ORTHO05D003450 3.5e-35 153.3 162 54.9
Carub.0003s3206 Capsella rubella HOM05D002880 ORTHO05D003450 4.6e-35 152.9 110 68.2
ClCG01G020300 Citrullus lanatus HOM05D002880 ORTHO05D003450 4.6e-35 152.9 161 54.0
DCAR_025997 Daucus carota HOM05D002880 ORTHO05D003450 4.6e-35 152.9 110 65.5
CARHR108410 Cardamine hirsuta HOM05D002880 ORTHO05D003450 6.0e-35 152.5 110 67.3
MELO3C007903.2 Cucumis melo HOM05D002880 ORTHO05D003450 6.0e-35 152.5 161 54.0
CsaV3_6G047090 Cucumis sativus L. HOM05D002880 ORTHO05D003450 6.0e-35 152.5 161 54.0
Eucgr.I02351 Eucalyptus grandis HOM05D002880 ORTHO05D003450 6.0e-35 152.5 110 67.3
CAN.G1671.13 Capsicum annuum HOM05D002880 ORTHO05D003450 1.0e-34 151.8 110 64.5
Sed0027366 Sechium edule HOM05D002880 ORTHO05D003450 1.0e-34 151.8 161 54.0
unitig_0.g3 Utricularia gibba HOM05D002880 ORTHO05D003450 1.0e-34 151.8 110 66.4
Haze_03765 Corylus avellana HOM05D002880 ORTHO05D003450 1.3e-34 151.4 162 54.3
Oeu005318.1 Olea europaea HOM05D002880 ORTHO05D003450 1.3e-34 151.4 164 51.2
Lj6g0023005 Lotus japonicus HOM05D002880 ORTHO05D003450 1.8e-34 151.0 164 51.8
Nitab4.5_0005660g0020 Nicotiana tabacum HOM05D002880 ORTHO05D003450 2.3e-34 150.6 161 52.8
Sed0017656 Sechium edule HOM05D002880 ORTHO05D003450 2.3e-34 150.6 110 64.5
Nn5g30154 Nelumbo nucifera HOM05D002880 ORTHO05D003450 3.9e-34 149.8 161 54.0
Aa31LG8G15100 Aethionema arabicum HOM05D002880 ORTHO05D003450 5.1e-34 149.4 111 68.5
Thhalv10022516m.g Eutrema salsugineum HOM05D002880 ORTHO05D003450 5.1e-34 149.4 110 66.4
AT4G36080 Arabidopsis thaliana HOM05D002880 ORTHO05D003450 6.7e-34 149.1 108 65.7
THA.LOC104804262 Tarenaya hassleriana HOM05D002880 ORTHO05D003450 1.9e-33 147.5 110 66.4
AL7G14960 Arabidopsis lyrata HOM05D002880 ORTHO05D003450 7.4e-33 145.6 108 64.8
Sp7g33860 Schrenkiella parvula HOM05D002880 ORTHO05D003450 7.4e-33 145.6 108 64.8
TAR625G0893 Trochodendron aralioides HOM05D002880 ORTHO05D003450 1.6e-32 144.4 160 51.2
Carub.0007s0415 Capsella rubella HOM05D002880 ORTHO05D003450 3.7e-32 143.3 108 63.0
CARHR244480 Cardamine hirsuta HOM05D002880 ORTHO05D003450 6.2e-32 142.5 160 50.0
PSO675G2090 Papaver somniferum HOM05D002880 ORTHO05D003450 6.2e-32 142.5 164 49.4
Ah.03g148750 Amaranthus hybridus HOM05D002880 ORTHO05D003450 8.2e-32 142.1 163 47.9
PSO541G3550 Papaver somniferum HOM05D002880 ORTHO05D003450 8.2e-32 142.1 161 49.7
A01p02660 Brassica napus HOM05D002880 ORTHO05D003450 1.4e-31 141.4 110 62.7
C01p02960 Brassica napus HOM05D002880 ORTHO05D003450 1.4e-31 141.4 110 62.7
BolC1t00282H Brassica oleracea HOM05D002880 ORTHO05D003450 1.4e-31 141.4 110 62.7
BraA01t00252Z Brassica rapa HOM05D002880 ORTHO05D003450 1.4e-31 141.4 110 62.7
MBI14_g08214_MAGBIO Magnolia biondii HOM05D002880 ORTHO05D003450 1.4e-31 141.4 111 64.9
Aqoxy5G01784 Aquilegia oxysepala HOM05D002880 ORTHO05D003450 1.8e-31 141.0 161 50.3
Thhalv10024177m.g Eutrema salsugineum HOM05D002880 ORTHO05D003450 1.2e-30 138.3 108 63.0
Aa31LG6G13030 Aethionema arabicum HOM05D002880 ORTHO05D003450 2.0e-30 137.5 117 59.8
ATR0630G005 Amborella trichopoda HOM05D002880 ORTHO05D003450 1.0e-29 135.2 161 49.1
HPP92_000449 Vanilla planifolia HOM05D002880 ORTHO05D003450 1.7e-29 134.4 159 50.3
HPP92_000450 Vanilla planifolia HOM05D002880 ORTHO05D003450 1.7e-29 134.4 122 54.9
TAR381G0408 Trochodendron aralioides HOM05D002880 ORTHO05D003450 2.2e-29 134.0 160 48.8
BcaNung00767 Brassica carinata HOM05D002880 ORTHO05D003450 4.9e-29 132.9 160 49.4
vmacro23472 Vaccinium macrocarpon HOM05D002880 ORTHO05D003450 4.9e-29 132.9 79 74.7
Mapoly0010s0094 Marchantia polymorpha HOM05D002880 ORTHO05D003450 1.4e-28 131.3 162 46.9
SHI08552 Sapria himalayana HOM05D002880 ORTHO05D003450 1.9e-28 131.0 110 58.2
HPP92_000393 Vanilla planifolia HOM05D002880 ORTHO05D003450 3.2e-28 130.2 111 58.6
ATR0630G002 Amborella trichopoda HOM05D002880 ORTHO05D003450 9.3e-28 128.6 111 58.6
Zm00001eb329250 Zea mays HOM05D002880 ORTHO05D003450 1.6e-27 127.9 161 46.6
Pp3c17_20000 Physcomitrium patens HOM05D002880 ORTHO05D003450 1.8e-26 124.4 161 46.0
AagrBONN_evm.TU.Sc2ySwM_368.861 Anthoceros agrestis HOM05D002880 ORTHO05D003450 1.3e-24 118.2 161 43.5
SMO147G0347 Selaginella moellendorffii HOM05D002880 ORTHO05D003450 2.2e-24 117.5 161 44.1
SHI08553 Sapria himalayana HOM05D002880 ORTHO05D003450 4.8e-24 116.3 160 40.0
CBR_g31691 Chara braunii HOM05D002880 ORTHO05D003450 1.2e-22 111.7 162 40.7
Actinidia17497 Actinidia chinensis HOM05D002880 ORTHO05D003450 3.8e-21 106.7 74 64.9
Actinidia17493 Actinidia chinensis HOM05D002880 ORTHO05D003450 5.0e-21 106.3 74 64.9
Actinidia11221 Actinidia chinensis HOM05D002880 ORTHO05D038078 1.4e-18 98.2 83 59.0
Nitab4.5_0026560g0010 Nicotiana tabacum HOM05D002880 ORTHO05D003450 5.3e-15 86.3 108 44.4
Cre02.g088750 Chlamydomonas reinhardtii HOM05D002880 ORTHO05D003450 1.4e-10 71.6 117 35.0
Cfa023980 Carpinus fangiana HOM05D002880 ORTHO05D003450 1.1e-09 68.6 61 50.8
PRCOL_00005144 Prasinoderma coloniale HOM05D002880 ORTHO05D003450 3.7e-08 63.5 94 39.4
Gohir.A11G175556 Gossypium hirsutum HOM05D002880 ORTHO05D003450 1.1e-07 62.0 37 73.0
MCO16G028 Micromonas commoda HOM05D002880 ORTHO05D003450 5.3e-07 59.7 83 36.1


User provided reference genes

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