Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g025310 Medicago truncatula HOM05D000974 ORTHO05D006000 7.6e-305 1049.7 519 100.0
Ca_04891_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 3.4e-273 944.5 530 88.5
Psat2g146560 Pisum sativum HOM05D000974 ORTHO05D006000 3.9e-269 931.0 527 88.4
Ca_12589_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 2.0e-260 902.1 530 87.0
VMungo0720G1793 Vigna mungo HOM05D000974 ORTHO05D006000 3.7e-251 871.3 527 83.3
Phvul.007G182100 Phaseolus vulgaris HOM05D000974 ORTHO05D006000 8.2e-251 870.2 527 83.5
Glyma.10G156900 Glycine max HOM05D000974 ORTHO05D006000 2.6e-249 865.1 527 82.9
TPR.G5252 Trifolium pratense HOM05D000974 ORTHO05D006000 8.8e-245 850.1 601 75.4
arahy.Tifrunner.gnm1.ann1.0Q8MRK Arachis hypogaea HOM05D000974 ORTHO05D006000 2.9e-240 835.1 527 80.6
arahy.Tifrunner.gnm1.ann1.DWF5LU Arachis hypogaea HOM05D000974 ORTHO05D006000 2.9e-240 835.1 527 80.6
Lj5g0022297 Lotus japonicus HOM05D000974 ORTHO05D006000 8.8e-237 823.5 525 79.6
Lalb_Chr21g0311651 Lupinus albus HOM05D000974 ORTHO05D006000 8.0e-230 800.4 527 76.9
Atru.chr9.317 Acer truncatum HOM05D000974 ORTHO05D006000 3.7e-227 791.6 526 75.7
Potri.004G225500 Populus trichocarpa HOM05D000974 ORTHO05D006000 4.9e-227 791.2 462 83.8
Duzib132G0946 Durio zibethinus HOM05D000974 ORTHO05D006000 7.0e-226 787.3 533 74.7
Atru.chr1.4075 Acer truncatum HOM05D000974 ORTHO05D006000 9.1e-226 786.9 527 75.9
Ciclev10000877m.g Citrus clementina HOM05D000974 ORTHO05D006000 9.1e-226 786.9 516 76.7
Thecc.02G017200 Theobroma cacao HOM05D000974 ORTHO05D006000 1.6e-225 786.2 485 80.2
COL.COLO4_17713 Corchorus olitorius HOM05D000974 ORTHO05D006000 2.7e-225 785.4 532 74.2
Manes.07G025100 Manihot esculenta HOM05D000974 ORTHO05D006000 1.7e-224 782.7 533 74.5
Duzib052G0127 Durio zibethinus HOM05D000974 ORTHO05D006000 2.8e-222 775.4 535 73.8
Dinv19422 Davidia involucrata HOM05D000974 ORTHO05D006000 1.0e-221 773.5 529 75.6
Dinv29601 Davidia involucrata HOM05D000974 ORTHO05D006000 3.0e-221 771.9 524 75.8
CSS0025059 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 4.4e-220 768.1 528 74.8
QL02p100861 Quercus lobata HOM05D000974 ORTHO05D006000 1.7e-219 766.1 486 79.2
Sabra01G0171200 Salix brachista HOM05D000974 ORTHO05D006000 3.7e-219 765.0 554 72.0
TAR381G1040 Trochodendron aralioides HOM05D000974 ORTHO05D006000 6.4e-219 764.2 531 74.2
Cpa.g.sc113.32 Carica papaya HOM05D000974 ORTHO05D006000 3.2e-218 761.9 464 80.4
GSVIVG01038784001 Vitis vinifera HOM05D000974 ORTHO05D006000 4.1e-218 761.5 528 73.5
MBI06_g06706_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D006000 2.0e-217 759.2 518 73.4
Nn5g27502 Nelumbo nucifera HOM05D000974 ORTHO05D006000 2.0e-217 759.2 475 78.5
Gorai.008G045600 Gossypium raimondii HOM05D000974 ORTHO05D006000 5.9e-217 757.7 463 80.3
Peaxi162Scf00011g01426 Petunia axillaris HOM05D000974 ORTHO05D006000 5.9e-217 757.7 517 73.9
Gohir.D12G043400 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.0e-216 756.9 531 72.7
Rhsim07G0227800 Rhododendron simsii HOM05D000974 ORTHO05D006000 1.0e-216 756.9 522 73.8
vmacro01708 Vaccinium macrocarpon HOM05D000974 ORTHO05D006000 1.7e-216 756.1 506 75.1
MSTRG.5204 Avicennia marina HOM05D000974 ORTHO05D006000 2.3e-216 755.7 462 79.2
Rhsim07G0227600 Rhododendron simsii HOM05D000974 ORTHO05D006000 2.3e-216 755.7 522 73.6
Cc02_g23270 Coffea canephora HOM05D000974 ORTHO05D006000 2.9e-216 755.4 448 81.0
Sopen01g045790 Solanum pennellii HOM05D000974 ORTHO05D006000 2.9e-216 755.4 441 82.8
Nitab4.5_0002347g0020 Nicotiana tabacum HOM05D000974 ORTHO05D006000 3.9e-216 755.0 518 73.4
PGSC0003DMG400024886 Solanum tuberosum HOM05D000974 ORTHO05D006000 5.0e-216 754.6 518 73.2
CSS0010237 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 6.6e-216 754.2 528 73.9
PGR142G3566 Punica granatum HOM05D000974 ORTHO05D006000 6.6e-216 754.2 460 80.9
CAN.G855.13 Capsicum annuum HOM05D000974 ORTHO05D006000 1.1e-215 753.4 448 81.0
ClCG10G007320 Citrullus lanatus HOM05D000974 ORTHO05D006000 1.9e-215 752.7 538 72.1
Cfa004480 Carpinus fangiana HOM05D000974 ORTHO05D006000 3.3e-215 751.9 534 74.0
MELO3C016483.2 Cucumis melo HOM05D000974 ORTHO05D006000 5.6e-215 751.1 538 71.4
Haze_10037 Corylus avellana HOM05D000974 ORTHO05D006000 9.5e-215 750.4 467 81.2
AL1G20430 Arabidopsis lyrata HOM05D000974 ORTHO05D006000 1.2e-214 750.0 462 79.4
CiPaw.06G174600 Carya illinoinensis HOM05D000974 ORTHO05D006000 1.2e-214 750.0 541 72.5
CsaV3_3G006560 Cucumis sativus L. HOM05D000974 ORTHO05D006000 1.2e-214 750.0 538 71.2
Solyc01g103440.3 Solanum lycopersicum HOM05D000974 ORTHO05D006000 1.2e-214 750.0 441 82.3
Sed0019412 Sechium edule HOM05D000974 ORTHO05D006000 1.6e-214 749.6 470 79.4
TWI15G1214 Tripterygium wilfordii HOM05D000974 ORTHO05D006000 2.8e-214 748.8 533 71.9
CANSAT54G1032 Cannabis sativa HOM05D000974 ORTHO05D006000 2.3e-213 745.7 519 74.2
Carub.0001s0921 Capsella rubella HOM05D000974 ORTHO05D006000 2.3e-213 745.7 480 77.1
THA.LOC104816816 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 6.8e-213 744.2 461 79.2
DCAR_006665 Daucus carota HOM05D000974 ORTHO05D006000 1.2e-212 743.4 460 79.8
Gohir.A01G185000 Gossypium hirsutum HOM05D000974 ORTHO05D006000 4.4e-212 741.5 481 76.3
Lj5C267T12 Lonicera japonica HOM05D000974 ORTHO05D006000 9.8e-212 740.3 526 71.7
THA.LOC104816783 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 5.4e-210 734.6 526 71.9
Rhsim11G0122100 Rhododendron simsii HOM05D000974 ORTHO05D006000 9.2e-210 733.8 438 81.7
Hund18885 Selenicereus undatus HOM05D000974 ORTHO05D006000 1.6e-209 733.0 443 80.1
Gorai.002G218200 Gossypium raimondii HOM05D000974 ORTHO05D006000 2.0e-209 732.6 481 75.5
Nitab4.5_0003816g0050 Nicotiana tabacum HOM05D000974 ORTHO05D006000 4.6e-209 731.5 441 80.7
Eucgr.I02775 Eucalyptus grandis HOM05D000974 ORTHO05D006000 3.0e-208 728.8 481 75.9
Prupe.1G580800 Prunus persica HOM05D000974 ORTHO05D006000 1.5e-207 726.5 429 82.1
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 4.3e-207 724.9 431 81.4
AT1G09830 Arabidopsis thaliana HOM05D000974 ORTHO05D006000 1.2e-206 723.4 480 75.2
BcaC07g38528 Brassica carinata HOM05D000974 ORTHO05D006000 2.8e-206 722.2 460 76.7
A06p06550 Brassica napus HOM05D000974 ORTHO05D006000 6.2e-206 721.1 439 80.4
AUR62020045 Chenopodium quinoa HOM05D000974 ORTHO05D006000 1.1e-205 720.3 437 79.2
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 1.1e-205 720.3 431 81.2
MD08G1243400 Malus domestica HOM05D000974 ORTHO05D006000 1.1e-205 720.3 422 82.9
BcaB03g13541 Brassica carinata HOM05D000974 ORTHO05D006000 1.4e-205 719.9 460 77.2
Aa31LG1G5090 Aethionema arabicum HOM05D000974 ORTHO05D006000 3.1e-205 718.8 553 67.3
AUR62001730 Chenopodium quinoa HOM05D000974 ORTHO05D006000 3.1e-205 718.8 437 79.2
ECA236G4964 Erigeron canadensis HOM05D000974 ORTHO05D006000 4.0e-205 718.4 436 79.1
HPP92_001871 Vanilla planifolia HOM05D000974 ORTHO05D006000 4.0e-205 718.4 497 71.2
Lsat_1_v5_gn_7_76800 Lactuca sativa HOM05D000974 ORTHO05D006000 6.8e-205 717.6 518 70.1
HanXRQChr11g0329691 Helianthus annuus HOM05D000974 ORTHO05D006000 3.4e-204 715.3 440 78.0
HanXRQChr06g0176431 Helianthus annuus HOM05D000974 ORTHO05D006000 4.4e-204 714.9 443 78.3
A08p34320 Brassica napus HOM05D000974 ORTHO05D006000 1.7e-203 713.0 457 77.2
MD15G1437700 Malus domestica HOM05D000974 ORTHO05D006000 2.9e-203 712.2 485 74.2
BcaC05g24841 Brassica carinata HOM05D000974 ORTHO05D006000 1.1e-202 710.3 534 69.3
Sc17g0003920 Simmondsia chinensis HOM05D000974 ORTHO05D006000 1.1e-202 710.3 435 79.3
CARHR009850 Cardamine hirsuta HOM05D000974 ORTHO05D006000 1.9e-202 709.5 482 74.1
Sp1g08460 Schrenkiella parvula HOM05D000974 ORTHO05D006000 2.4e-202 709.1 492 72.6
Ah.08g220180 Amaranthus hybridus HOM05D000974 ORTHO05D006000 4.1e-202 708.4 439 78.1
C05p07940 Brassica napus HOM05D000974 ORTHO05D006000 4.1e-202 708.4 534 69.5
Os08g0191200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 4.1e-202 708.4 439 77.4
EL10Ac7g16076 Beta vulgaris HOM05D000974 ORTHO05D006000 7.1e-202 707.6 459 76.0
Thhalv10007333m.g Eutrema salsugineum HOM05D000974 ORTHO05D006000 7.1e-202 707.6 477 73.6
BolC8t48951H Brassica oleracea HOM05D000974 ORTHO05D006000 3.5e-201 705.3 463 75.6
SalBow8G2098 Salvia bowleyana HOM05D000974 ORTHO05D006000 4.6e-201 704.9 428 79.7
ATR0598G043 Amborella trichopoda HOM05D000974 ORTHO05D006000 2.3e-200 702.6 439 76.8
BolC5t29546H Brassica oleracea HOM05D000974 ORTHO05D006000 1.5e-199 699.9 538 68.2
SalBow4G1817 Salvia bowleyana HOM05D000974 ORTHO05D006000 3.3e-199 698.7 426 79.8
Os12g0197100 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 9.5e-199 697.2 438 76.5
SEGI_14806 Sequoiadendron giganteum HOM05D000974 ORTHO05D006000 1.6e-198 696.4 478 72.2
BraA06t23866Z Brassica rapa HOM05D000974 ORTHO05D006000 8.1e-198 694.1 533 67.4
BraA08t35343Z Brassica rapa HOM05D000974 ORTHO05D006000 1.1e-197 693.7 463 74.1
Zm00001eb294330 Zea mays HOM05D000974 ORTHO05D006000 1.2e-196 690.3 466 73.2
PSO782G2965 Papaver somniferum HOM05D000974 ORTHO05D006000 7.6e-196 687.6 447 75.4
HPP92_026669 Vanilla planifolia HOM05D000974 ORTHO05D006000 7.6e-196 687.6 438 74.7
PSO170G5315 Papaver somniferum HOM05D000974 ORTHO05D006000 2.2e-195 686.0 447 75.8
Aqoxy1G01816 Aquilegia oxysepala HOM05D000974 ORTHO05D006000 1.1e-194 683.7 539 66.8
Gohir.D01G176200 Gossypium hirsutum HOM05D000974 ORTHO05D006000 4.1e-194 681.8 481 71.7
Migut.N00845 Erythranthe guttata HOM05D000974 ORTHO05D006000 1.2e-193 680.2 474 72.4
FAN10G2816 Fragaria x ananassa HOM05D000974 ORTHO05D006000 7.6e-188 661.0 399 81.0
SGA_v2.0_scaffold42G15899 Striga asiatica HOM05D000974 ORTHO05D006000 4.9e-187 658.3 497 66.2
CDE02G0137 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 2.7e-185 652.5 410 77.8
Pp3c19_9430 Physcomitrium patens HOM05D000974 ORTHO05D006000 2.7e-185 652.5 449 70.4
SMO358G0426 Selaginella moellendorffii HOM05D000974 ORTHO05D006000 2.8e-182 642.5 432 71.1
Pp3c22_7830 Physcomitrium patens HOM05D000974 ORTHO05D006000 9.0e-181 637.5 473 66.0
Mapoly0041s0149 Marchantia polymorpha HOM05D000974 ORTHO05D006000 2.7e-177 625.9 435 68.3
AagrBONN_evm.TU.Sc2ySwM_368.1734 Anthoceros agrestis HOM05D000974 ORTHO05D006000 1.5e-175 620.2 432 69.2
CDE04G1010 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 1.8e-165 586.6 369 77.5
Oeu030849.1 Olea europaea HOM05D000974 ORTHO05D006000 1.5e-156 557.0 330 82.4
Gohir.A12G043800 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.9e-151 540.0 328 81.4
CBR_g36226 Chara braunii HOM05D000974 ORTHO05D006000 1.9e-146 523.5 434 60.4
Eucgr.I02773 Eucalyptus grandis HOM05D000974 ORTHO05D006000 2.3e-144 516.5 328 77.1
C08p13210 Brassica napus HOM05D000974 ORTHO05D006000 2.0e-143 513.5 334 76.6
Nitab4.5_0003281g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 4.3e-143 512.3 302 82.5
MCO16G439 Micromonas commoda HOM05D000974 ORTHO05D006000 5.3e-141 505.4 432 59.7
Cre18.g749497 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 5.9e-140 501.9 449 57.7
CSS0038090 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 9.4e-138 494.6 299 82.3
unitig_8.g3587 Utricularia gibba HOM05D000974 ORTHO05D006000 7.9e-137 491.5 302 78.5
CSS0048615 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 6.3e-126 455.3 299 75.9
PRCOL_00005058 Prasinoderma coloniale HOM05D000974 ORTHO05D006000 3.6e-121 439.5 424 55.7
Zm00001eb342350 Zea mays HOM05D000974 ORTHO05D006000 3.6e-121 439.5 277 76.2
Nitab4.5_0003893g0040 Nicotiana tabacum HOM05D000974 ORTHO05D006000 9.8e-119 431.4 340 66.8
Pp3s32_121 Physcomitrium patens HOM05D000974 ORTHO05D006000 4.5e-108 396.0 442 45.0
arahy.Tifrunner.gnm1.ann1.FF9LB7 Arachis hypogaea HOM05D000974 ORTHO05D006000 1.6e-105 387.5 242 81.0
Cfa023437 Carpinus fangiana HOM05D000974 ORTHO05D006000 6.2e-97 359.0 432 44.4
Nitab4.5_0003893g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.2e-81 308.1 175 82.3
Cfa022594 Carpinus fangiana HOM05D000974 ORTHO05D006000 2.1e-76 290.8 355 44.2
CSS0011192 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 9.0e-56 222.2 137 78.1
arahy.Tifrunner.gnm1.ann1.LT2KYF Arachis hypogaea HOM05D000974 ORTHO05D006000 2.4e-53 214.2 247 53.8
Nitab4.5_0001773g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 3.5e-52 210.3 178 64.0
Cre18.g749647 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 3.8e-46 190.3 180 53.3
unitig_8.g3588 Utricularia gibba HOM05D000974 ORTHO05D006000 4.6e-44 183.3 120 70.0
Hund18887 Selenicereus undatus HOM05D000974 ORTHO05D006000 7.9e-44 182.6 129 69.8
CSS0022082 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 5.7e-42 176.4 131 68.7
arahy.Tifrunner.gnm1.ann1.3IC4JN Arachis hypogaea HOM05D000974 ORTHO05D006000 7.6e-39 166.0 90 87.8
Actinidia38994 Actinidia chinensis HOM05D000974 ORTHO05D006000 2.7e-36 157.5 96 76.0
BraA07t28236Z Brassica rapa HOM05D000974 ORTHO05D016809 3.6e-28 130.6 101 62.4
A07p04420 Brassica napus HOM05D000974 ORTHO05D016809 1.0e-27 129.0 128 54.7
BcaC04g19187 Brassica carinata HOM05D000974 ORTHO05D016809 2.2e-25 121.3 80 71.2
A06p28170 Brassica napus HOM05D000974 ORTHO05D016809 2.8e-25 120.9 81 71.6
BcaC01g01590 Brassica carinata HOM05D000974 ORTHO05D016809 6.3e-25 119.8 80 71.2
Sabra03G0003100 Salix brachista HOM05D000974 ORTHO05D006000 1.4e-24 118.6 78 70.5
C03p74280 Brassica napus HOM05D000974 ORTHO05D016809 2.4e-24 117.9 80 70.0
C08p14510 Brassica napus HOM05D000974 ORTHO05D016809 1.2e-23 115.5 77 70.1
Haze_26160 Corylus avellana HOM05D003155 ORTHO05D004342 5.9e-23 113.2 258 31.8
C03p62530 Brassica napus HOM05D000974 ORTHO05D016809 2.1e-20 104.8 114 50.9
BolC3t18510H Brassica oleracea HOM05D000974 ORTHO05D016809 2.1e-20 104.8 114 50.9
BcaC01g02641 Brassica carinata HOM05D000974 ORTHO05D016809 3.6e-20 104.0 87 57.5
Nitab4.5_0000787g0090 Nicotiana tabacum HOM05D000017 ORTHO05D000308 5.2e-19 100.1 82 64.6
arahy.Tifrunner.gnm1.ann1.G9FX3A Arachis hypogaea HOM05D000974 ORTHO05D083560 4.8e-17 93.6 53 83.0


User provided reference genes

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