Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g023910 Medicago truncatula HOM05D010736 ORTHO05D010111 5.3e-123 444.5 247 100.0
TPR.G8399 Trifolium pratense HOM05D013440 ORTHO05D013937 9.9e-45 184.5 250 48.0
Psat2g149320 Pisum sativum HOM05D010736 ORTHO05D010111 1.4e-43 180.6 207 52.2
Psat0s1262g0120 Pisum sativum HOM05D010736 ORTHO05D010111 1.2e-42 177.6 207 52.2
Ca_24971_v3 Cicer arietinum L. HOM05D010736 ORTHO05D010111 1.1e-38 164.5 236 44.1
TPR.G8374 Trifolium pratense HOM05D010736 ORTHO05D010111 3.2e-35 152.9 264 43.2
Psat0s1262g0240 Pisum sativum HOM05D010736 ORTHO05D010111 1.5e-32 144.1 162 54.3
Ca_24970_v3 Cicer arietinum L. HOM05D010736 ORTHO05D010111 6.2e-31 138.7 137 54.7
Lalb_Chr09g0321241 Lupinus albus HOM05D010736 ORTHO05D010111 4.2e-19 99.4 130 40.0
Glyma.11G084900 Glycine max HOM05D010736 ORTHO05D010111 5.5e-19 99.0 170 37.6
Lj2g0020887 Lotus japonicus HOM05D010736 ORTHO05D010111 9.3e-19 98.2 168 40.5
arahy.Tifrunner.gnm1.ann1.62X1XK Arachis hypogaea HOM05D010736 ORTHO05D010111 7.9e-18 95.1 194 34.5
arahy.Tifrunner.gnm1.ann1.IS160S Arachis hypogaea HOM05D010736 ORTHO05D010111 7.9e-18 95.1 194 34.5
arahy.Tifrunner.gnm1.ann1.JYQV5P Arachis hypogaea HOM05D010736 ORTHO05D010111 1.8e-17 94.0 84 51.2
arahy.Tifrunner.gnm1.ann1.KB9TDA Arachis hypogaea HOM05D010736 ORTHO05D010111 1.8e-17 94.0 84 51.2
VMungo1215G0851 Vigna mungo HOM05D010736 ORTHO05D010111 6.7e-17 92.0 164 37.8
Phvul.002G115500 Phaseolus vulgaris HOM05D010736 ORTHO05D010111 5.7e-16 89.0 123 40.7
THA.LOC104820185 Tarenaya hassleriana HOM05D008569 ORTHO05D010111 6.9e-14 82.0 144 36.8
Potri.005G100300 Populus trichocarpa HOM05D008569 ORTHO05D010111 2.6e-13 80.1 139 38.1
Psat0s1262g0280 Pisum sativum HOM05D010736 ORTHO05D010111 4.5e-13 79.3 158 40.5
THA.LOC104820184 Tarenaya hassleriana HOM05D008569 ORTHO05D010111 4.5e-13 79.3 76 48.7
Thhalv10026068m.g Eutrema salsugineum HOM05D008569 ORTHO05D010111 1.3e-12 77.8 172 36.0
AL7G15540 Arabidopsis lyrata HOM05D008569 ORTHO05D010111 2.9e-12 76.6 153 34.0
Carub.0007s0469 Capsella rubella HOM05D008569 ORTHO05D010111 5.0e-12 75.9 156 32.7
Cpa.g.c32926 Carica papaya HOM05D008569 ORTHO05D010111 8.4e-12 75.1 195 31.3
Sabra05G0082900 Salix brachista HOM05D008569 ORTHO05D010111 1.4e-11 74.3 171 32.2
C01p03340 Brassica napus HOM05D008569 ORTHO05D010111 1.6e-10 70.9 165 30.9
BolC1t00319H Brassica oleracea HOM05D008569 ORTHO05D010111 1.6e-10 70.9 165 30.9
Lalb_Chr05g0211881 Lupinus albus HOM05D010736 ORTHO05D010111 2.1e-10 70.5 135 36.3
Sp7g33380 Schrenkiella parvula HOM05D008569 ORTHO05D010111 2.1e-10 70.5 186 32.8
Sed0003917 Sechium edule HOM05D008569 ORTHO05D010111 2.7e-10 70.1 147 34.0
AL7G15420 Arabidopsis lyrata HOM05D008569 ORTHO05D010111 3.5e-10 69.7 111 39.6
A01p02990 Brassica napus HOM05D008569 ORTHO05D010111 3.5e-10 69.7 106 39.6
BraA01t00282Z Brassica rapa HOM05D008569 ORTHO05D010111 3.5e-10 69.7 106 39.6
ClCG10G000200 Citrullus lanatus HOM05D008569 ORTHO05D010111 3.5e-10 69.7 143 32.2
Carub.0007s0458 Capsella rubella HOM05D008569 ORTHO05D010111 4.6e-10 69.3 117 36.8
CARHR243950 Cardamine hirsuta HOM05D008569 ORTHO05D010111 4.6e-10 69.3 52 53.8
AT4G35700 Arabidopsis thaliana HOM05D008569 ORTHO05D010111 7.9e-10 68.6 182 29.7
ClCG01G020850 Citrullus lanatus HOM05D008569 ORTHO05D010111 1.0e-09 68.2 50 56.0
CsaV3_3G000220 Cucumis sativus L. HOM05D008569 ORTHO05D010111 1.0e-09 68.2 160 31.9
MELO3C007971.2 Cucumis melo HOM05D008569 ORTHO05D010111 1.3e-09 67.8 157 33.1
CsaV3_6G047820 Cucumis sativus L. HOM05D008569 ORTHO05D010111 1.8e-09 67.4 50 56.0
PSO478G0578 Papaver somniferum HOM05D000174 ORTHO05D001526 1.8e-09 67.4 166 31.3
QL06p053745 Quercus lobata HOM05D008569 ORTHO05D010111 1.8e-09 67.4 158 33.5
CiPaw.07G003700 Carya illinoinensis HOM05D008569 ORTHO05D010111 2.3e-09 67.0 53 54.7
Sed0010976 Sechium edule HOM05D008569 ORTHO05D010111 3.0e-09 66.6 66 48.5
HPP92_003504 Vanilla planifolia HOM05D000174 ORTHO05D001526 3.9e-09 66.2 52 51.9
Prupe.7G181100 Prunus persica HOM05D008569 ORTHO05D010111 5.1e-09 65.9 82 45.1
Duzib264G0559 Durio zibethinus HOM05D019103 ORTHO05D010111 6.7e-09 65.5 151 33.1
Nn6g31718 Nelumbo nucifera HOM05D000174 ORTHO05D001526 6.7e-09 65.5 104 39.4
AT4G35610 Arabidopsis thaliana HOM05D008569 ORTHO05D010111 8.7e-09 65.1 153 32.7
Haze_03671 Corylus avellana HOM05D008569 ORTHO05D010111 1.1e-08 64.7 232 26.3
Psat2g149560 Pisum sativum HOM05D026938 ORTHO05D025849 1.5e-08 64.3 147 29.9
Thhalv10023161m.g Eutrema salsugineum HOM05D008569 ORTHO05D010111 1.9e-08 63.9 85 37.6
QL06p052831 Quercus lobata HOM05D008569 ORTHO05D010111 1.9e-08 63.9 160 33.1
C01p03370 Brassica napus HOM05D008569 ORTHO05D010111 3.3e-08 63.2 57 45.6
BolC1t00322H Brassica oleracea HOM05D008569 ORTHO05D010111 3.3e-08 63.2 57 45.6
MELO3C013717.2 Cucumis melo HOM05D008569 ORTHO05D010111 4.3e-08 62.8 257 26.5
BcaNung03648 Brassica carinata HOM05D008569 ORTHO05D010111 7.4e-08 62.0 162 29.0
A01p03020 Brassica napus HOM05D008569 ORTHO05D010111 7.4e-08 62.0 153 28.8
BraA01t00284Z Brassica rapa HOM05D008569 ORTHO05D010111 7.4e-08 62.0 153 28.8
Zm00001eb033660 Zea mays HOM05D000174 ORTHO05D001526 7.4e-08 62.0 42 59.5
PSO017G6757 Papaver somniferum HOM05D000174 ORTHO05D001526 9.7e-08 61.6 166 30.7
BcaNung03645 Brassica carinata HOM05D008569 ORTHO05D010111 1.3e-07 61.2 159 27.7
Cfa007069 Carpinus fangiana HOM05D008569 ORTHO05D010111 1.6e-07 60.8 232 28.4
Thecc.01G006600 Theobroma cacao HOM05D019103 ORTHO05D010111 2.2e-07 60.5 177 29.4
vmacro17301 Vaccinium macrocarpon HOM05D000174 ORTHO05D001526 2.2e-07 60.5 61 50.8
Duzib147G0625 Durio zibethinus HOM05D019103 ORTHO05D010111 4.8e-07 59.3 166 27.7
ClCG02G009940 Citrullus lanatus HOM05D000174 ORTHO05D001526 8.2e-07 58.5 38 63.2
CsaV3_6G010150 Cucumis sativus L. HOM05D000174 ORTHO05D000198 8.2e-07 58.5 47 53.2
Rhsim05G0047500 Rhododendron simsii HOM05D000174 ORTHO05D001526 8.2e-07 58.5 69 44.9
RhsimUnG0141900 Rhododendron simsii HOM05D000174 ORTHO05D001526 8.2e-07 58.5 69 44.9
Haze_02015 Corylus avellana HOM05D000174 ORTHO05D001526 1.1e-06 58.2 67 44.8
Gohir.A03G209700 Gossypium hirsutum HOM05D000174 ORTHO05D001526 1.1e-06 58.2 53 50.9
Lalb_Chr22g0352391 Lupinus albus HOM05D000174 ORTHO05D001526 1.1e-06 58.2 65 44.6
Lalb_Chr22g0352401 Lupinus albus HOM05D000174 ORTHO05D001526 1.1e-06 58.2 65 44.6
MD10G1139600 Malus domestica HOM05D000174 ORTHO05D001526 1.1e-06 58.2 69 43.5
PGR102G2978 Punica granatum HOM05D008569 ORTHO05D010111 1.1e-06 58.2 83 33.7
RcHm_v2.0_Chr6g0280711 Rosa chinensis HOM05D000174 ORTHO05D001526 1.1e-06 58.2 61 47.5
CSS0027823 Camellia sinensis var. sinensis HOM05D000174 ORTHO05D001526 1.4e-06 57.8 98 36.7
CiPaw.05G091800 Carya illinoinensis HOM05D000174 ORTHO05D001526 1.4e-06 57.8 74 43.2
Gohir.D02G231400 Gossypium hirsutum HOM05D000174 ORTHO05D001526 1.4e-06 57.8 53 50.9
Gorai.005G259000 Gossypium raimondii HOM05D000174 ORTHO05D001526 1.4e-06 57.8 53 50.9
Manes.02G113100 Manihot esculenta HOM05D008569 ORTHO05D010111 1.4e-06 57.8 41 56.1
Manes.08G058500 Manihot esculenta HOM05D000174 ORTHO05D001526 1.4e-06 57.8 79 40.5
Oeu015527.1 Olea europaea HOM05D000174 ORTHO05D001526 1.4e-06 57.8 105 36.2
Oeu015529.1 Olea europaea HOM05D000174 ORTHO05D001526 1.4e-06 57.8 105 36.2
Rhsim11G0197100 Rhododendron simsii HOM05D000174 ORTHO05D001526 1.4e-06 57.8 118 33.1
Hma1.2p1_0032F.1_g018820 Hydrangea macrophylla HOM05D000174 ORTHO05D001526 1.8e-06 57.4 64 48.4
HPP92_020708 Vanilla planifolia HOM05D000174 ORTHO05D001526 1.8e-06 57.4 53 47.2
AL7G15890 Arabidopsis lyrata HOM05D000174 ORTHO05D001526 2.4e-06 57.0 80 42.5
AT4G35280 Arabidopsis thaliana HOM05D000174 ORTHO05D001526 2.4e-06 57.0 80 41.2
PSO210G1674 Papaver somniferum HOM05D000174 ORTHO05D001526 2.4e-06 57.0 47 53.2
Carub.0003s3112 Capsella rubella HOM05D000174 ORTHO05D001526 3.1e-06 56.6 65 43.1
Cpa.g.sc20.205 Carica papaya HOM05D000174 ORTHO05D001526 3.1e-06 56.6 63 44.4
Ciclev10030233m.g Citrus clementina HOM05D000174 ORTHO05D001526 3.1e-06 56.6 53 50.9
Cc10_g04030 Coffea canephora HOM05D000174 ORTHO05D001526 3.1e-06 56.6 63 49.2
Dinv41879 Davidia involucrata HOM05D000174 ORTHO05D001526 3.1e-06 56.6 72 43.1
Manes.09G006400 Manihot esculenta HOM05D000174 ORTHO05D001526 3.1e-06 56.6 115 32.2
Oeu048888.1 Olea europaea HOM05D008569 ORTHO05D026372 3.1e-06 56.6 95 36.8
Os02g0293900 Oryza sativa ssp. japonica HOM05D000174 ORTHO05D001526 3.1e-06 56.6 39 61.5
PGR142G1089 Punica granatum HOM05D000174 ORTHO05D001526 3.1e-06 56.6 98 36.7
FvH4_2g16630 Fragaria vesca HOM05D000174 ORTHO05D001526 4.1e-06 56.2 64 45.3
FAN20G1232 Fragaria x ananassa HOM05D000174 ORTHO05D001526 4.1e-06 56.2 64 45.3
FAN24G2331 Fragaria x ananassa HOM05D000174 ORTHO05D001526 4.1e-06 56.2 64 45.3
FAN27G0184 Fragaria x ananassa HOM05D000174 ORTHO05D001526 4.1e-06 56.2 64 45.3
Hma1.2p1_0032F.1_g018690 Hydrangea macrophylla HOM05D000174 ORTHO05D001526 4.1e-06 56.2 48 54.2
Oeu051846.1 Olea europaea HOM05D001927 ORTHO05D001972 4.1e-06 56.2 95 35.8
THA.LOC104819687 Tarenaya hassleriana HOM05D000174 ORTHO05D001526 4.1e-06 56.2 68 47.1
CiPaw.06G116500 Carya illinoinensis HOM05D000174 ORTHO05D001526 5.3e-06 55.8 118 31.4
Duzib052G0399 Durio zibethinus HOM05D000174 ORTHO05D001526 5.3e-06 55.8 55 50.9
Duzib132G0848 Durio zibethinus HOM05D000174 ORTHO05D001526 5.3e-06 55.8 79 35.4
Thhalv10023020m.g Eutrema salsugineum HOM05D000174 ORTHO05D001526 5.3e-06 55.8 105 34.3
Medtr5g062300 Medicago truncatula HOM05D000174 ORTHO05D001526 5.3e-06 55.8 54 51.9
TAR381G0686 Trochodendron aralioides HOM05D000174 ORTHO05D001526 5.3e-06 55.8 81 37.0
EL10Ac9g21244 Beta vulgaris HOM05D000174 ORTHO05D001526 6.9e-06 55.5 54 51.9
CARHR243600 Cardamine hirsuta HOM05D000174 ORTHO05D001526 6.9e-06 55.5 53 52.8
Eucgr.I01518 Eucalyptus grandis HOM05D000174 ORTHO05D001526 6.9e-06 55.5 57 49.1
PGR042G3277 Punica granatum HOM05D000174 ORTHO05D001526 6.9e-06 55.5 71 42.3
Thecc.02G044700 Theobroma cacao HOM05D000174 ORTHO05D001526 6.9e-06 55.5 48 54.2
GSVIVG01023887001 Vitis vinifera HOM05D000174 ORTHO05D001526 6.9e-06 55.5 62 45.2
Actinidia20568 Actinidia chinensis HOM05D000174 ORTHO05D001526 9.0e-06 55.1 59 47.5
CARHR293490 Cardamine hirsuta HOM05D000174 ORTHO05D001526 9.0e-06 55.1 41 61.0
Lsat_1_v5_gn_8_121041 Lactuca sativa HOM05D000174 ORTHO05D001526 9.0e-06 55.1 62 48.4
MD05G1134500 Malus domestica HOM05D000174 ORTHO05D001526 9.0e-06 55.1 69 42.0
Sopen06g020600 Solanum pennellii HOM05D000174 ORTHO05D001526 9.0e-06 55.1 119 31.1
unitig_736.g22730 Utricularia gibba HOM05D008569 ORTHO05D001526 9.0e-06 55.1 71 40.8


User provided reference genes

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