Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g012940 Medicago truncatula HOM05D004501 ORTHO05D004944 0.0e+00 1914.0 961 100.0
Psat2g176440 Pisum sativum HOM05D004501 ORTHO05D004944 0.0e+00 1686.4 932 90.8
Ca_24594_v3 Cicer arietinum L. HOM05D004501 ORTHO05D004944 0.0e+00 1676.0 968 87.2
TPR.G18132 Trifolium pratense HOM05D004501 ORTHO05D004944 0.0e+00 1563.1 941 85.1
Glyma.11G035800 Glycine max HOM05D004501 ORTHO05D004944 0.0e+00 1497.6 968 79.1
Glyma.01G207400 Glycine max HOM05D004501 ORTHO05D004944 0.0e+00 1479.5 968 78.3
VMungo1215G1578 Vigna mungo HOM05D004501 ORTHO05D004944 0.0e+00 1468.4 969 77.5
Phvul.002G056400 Phaseolus vulgaris HOM05D004501 ORTHO05D004944 0.0e+00 1464.5 969 77.1
Lalb_Chr16g0379471 Lupinus albus HOM05D004501 ORTHO05D004944 0.0e+00 1441.4 967 76.1
Lj2g0006235 Lotus japonicus HOM05D004501 ORTHO05D004944 0.0e+00 1411.4 968 75.9
Lalb_Chr09g0324311 Lupinus albus HOM05D004501 ORTHO05D004944 0.0e+00 1377.1 956 74.6
arahy.Tifrunner.gnm1.ann1.0753T9 Arachis hypogaea HOM05D004501 ORTHO05D004944 0.0e+00 1354.3 976 72.3
arahy.Tifrunner.gnm1.ann1.F6SWGC Arachis hypogaea HOM05D004501 ORTHO05D004944 0.0e+00 1354.3 976 72.3
Cfa012694 Carpinus fangiana HOM05D004501 ORTHO05D004944 0.0e+00 1100.5 976 60.5
Haze_07939 Corylus avellana HOM05D004501 ORTHO05D004944 0.0e+00 1091.3 1006 59.2
CiPaw.11G082400 Carya illinoinensis HOM05D004501 ORTHO05D004944 0.0e+00 1078.9 970 59.4
QL12p011237 Quercus lobata HOM05D004501 ORTHO05D004944 3.2e-309 1065.1 970 59.3
Potri.001G155200 Populus trichocarpa HOM05D004501 ORTHO05D004944 7.7e-303 1043.9 956 58.1
MD04G1060900 Malus domestica HOM05D004501 ORTHO05D004944 6.5e-302 1040.8 976 56.7
Atru.chr9.1263 Acer truncatum HOM05D004501 ORTHO05D004944 1.1e-301 1040.0 966 57.3
Ciclev10018712m.g Citrus clementina HOM05D004501 ORTHO05D004944 8.0e-300 1033.9 979 56.9
vmacro14139 Vaccinium macrocarpon HOM05D004501 ORTHO05D004944 2.2e-294 1015.8 961 56.8
RcHm_v2.0_Chr7g0204151 Rosa chinensis HOM05D004501 ORTHO05D004944 7.2e-293 1010.7 980 56.0
FvH4_5g19540 Fragaria vesca HOM05D004501 ORTHO05D004944 1.2e-292 1010.0 979 55.7
FAN08G1352 Fragaria x ananassa HOM05D004501 ORTHO05D004944 2.1e-292 1009.2 979 55.5
PGR042G0255 Punica granatum HOM05D004501 ORTHO05D004944 8.0e-292 1007.3 975 55.8
Potri.003G079700 Populus trichocarpa HOM05D004501 ORTHO05D004944 1.8e-291 1006.1 969 56.1
Sabra03G0049600 Salix brachista HOM05D004501 ORTHO05D004944 5.7e-290 1001.1 969 56.2
Thecc.03G247200 Theobroma cacao HOM05D004501 ORTHO05D004944 8.3e-289 997.3 955 56.3
TWI15G0617 Tripterygium wilfordii HOM05D004501 ORTHO05D004944 7.7e-287 990.7 946 56.0
FAN13G2915 Fragaria x ananassa HOM05D004501 ORTHO05D004944 1.7e-286 989.6 987 55.0
CANSAT21G1630 Cannabis sativa HOM05D004501 ORTHO05D004944 1.9e-285 986.1 991 55.4
Eucgr.E00402 Eucalyptus grandis HOM05D004501 ORTHO05D004944 1.2e-282 976.9 976 55.2
Prupe.5G064600 Prunus persica HOM05D004501 ORTHO05D004944 4.4e-282 974.9 902 57.8
Nn1g00910 Nelumbo nucifera HOM05D004501 ORTHO05D004944 5.7e-282 974.5 947 55.5
Sabra01G0124800 Salix brachista HOM05D004501 ORTHO05D004944 7.5e-282 974.2 989 54.3
Rhsim07G0115200 Rhododendron simsii HOM05D004501 ORTHO05D004944 1.4e-280 969.9 954 54.9
Manes.01G084200 Manihot esculenta HOM05D004501 ORTHO05D004944 5.0e-278 961.4 935 55.7
Gorai.008G233400 Gossypium raimondii HOM05D004501 ORTHO05D004944 1.2e-276 956.8 972 54.6
Dinv21665 Davidia involucrata HOM05D004501 ORTHO05D004944 8.0e-276 954.1 909 57.5
COL.COLO4_37109 Corchorus olitorius HOM05D004501 ORTHO05D004944 1.0e-275 953.7 941 54.7
Gohir.D12G217800 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.0e-275 953.7 972 54.4
FAN18G4013 Fragaria x ananassa HOM05D004501 ORTHO05D004944 5.2e-275 951.4 1012 52.7
Gohir.A12G215200 Gossypium hirsutum HOM05D004501 ORTHO05D004944 5.2e-275 951.4 972 54.3
PGSC0003DMG400026239 Solanum tuberosum HOM05D004501 ORTHO05D004944 7.5e-274 947.6 966 53.5
Duzib205G0832 Durio zibethinus HOM05D004501 ORTHO05D004944 1.3e-273 946.8 957 54.8
CsaV3_5G004460 Cucumis sativus L. HOM05D004501 ORTHO05D004944 4.1e-272 941.8 982 52.2
Sopen08g026820 Solanum pennellii HOM05D004501 ORTHO05D004944 3.5e-271 938.7 966 53.3
MELO3C005513.2 Cucumis melo HOM05D004501 ORTHO05D004944 1.3e-270 936.8 984 52.4
Cc08_g12070 Coffea canephora HOM05D004501 ORTHO05D004944 3.9e-270 935.3 968 54.2
Sed0022861 Sechium edule HOM05D004501 ORTHO05D004944 2.5e-269 932.6 970 52.7
Solyc08g078320.3 Solanum lycopersicum HOM05D004501 ORTHO05D004944 7.3e-269 931.0 966 53.1
Oeu027013.1 Olea europaea HOM05D004501 ORTHO05D004944 4.0e-267 925.2 978 53.0
ClCG01G004260 Citrullus lanatus HOM05D004501 ORTHO05D004944 5.8e-266 921.4 1064 48.7
Lj2C224T11 Lonicera japonica HOM05D004501 ORTHO05D004944 3.7e-265 918.7 948 54.7
CAN.G1178.8 Capsicum annuum HOM05D004501 ORTHO05D004944 5.4e-264 914.8 947 52.6
THA.LOC104810067 Tarenaya hassleriana HOM05D004501 ORTHO05D004944 2.7e-263 912.5 963 51.4
Sed0003847 Sechium edule HOM05D004501 ORTHO05D004944 1.5e-261 906.7 969 51.8
AUR62007118 Chenopodium quinoa HOM05D004501 ORTHO05D004944 5.6e-261 904.8 960 52.2
EL10Ac5g12334 Beta vulgaris HOM05D004501 ORTHO05D004944 1.1e-259 900.6 957 51.9
Gorai.003G175400 Gossypium raimondii HOM05D004501 ORTHO05D004944 6.8e-259 897.9 951 52.5
Duzib068G0690 Durio zibethinus HOM05D004501 ORTHO05D004944 8.9e-259 897.5 950 52.3
Sc01g0008260 Simmondsia chinensis HOM05D004501 ORTHO05D004944 2.6e-258 896.0 903 53.2
Carub.0004s2192 Capsella rubella HOM05D004501 ORTHO05D004944 7.1e-256 887.9 956 51.0
CARHR134700 Cardamine hirsuta HOM05D004501 ORTHO05D004944 7.1e-256 887.9 964 50.5
Gohir.D03G165700 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.2e-255 887.1 951 52.1
Hund14524 Selenicereus undatus HOM05D004501 ORTHO05D004944 1.2e-255 887.1 958 51.9
AL4G37360 Arabidopsis lyrata HOM05D004501 ORTHO05D004944 1.0e-254 884.0 955 50.8
CiPaw.12G049700 Carya illinoinensis HOM05D004501 ORTHO05D004944 1.7e-254 883.2 835 57.2
PSO675G3024 Papaver somniferum HOM05D004501 ORTHO05D004944 2.3e-254 882.9 998 50.3
Gohir.A03G006500 Gossypium hirsutum HOM05D004501 ORTHO05D004944 3.0e-254 882.5 949 51.8
AT2G39810 Arabidopsis thaliana HOM05D004501 ORTHO05D004944 2.8e-252 875.9 928 51.1
Thhalv10016197m.g Eutrema salsugineum HOM05D004501 ORTHO05D004944 1.1e-251 874.0 955 51.0
HanXRQChr13g0417701 Helianthus annuus HOM05D004501 ORTHO05D004944 1.2e-250 870.5 953 51.8
PSO732G0005 Papaver somniferum HOM05D004501 ORTHO05D004944 2.6e-250 869.4 974 51.1
Sp4g22100 Schrenkiella parvula HOM05D004501 ORTHO05D004944 2.9e-249 865.9 965 50.2
Actinidia02160 Actinidia chinensis HOM05D004501 ORTHO05D004944 8.3e-249 864.4 961 49.9
Aa31LG5G19800 Aethionema arabicum HOM05D004501 ORTHO05D004944 2.7e-247 859.4 960 50.5
ECA240G3755 Erigeron canadensis HOM05D004501 ORTHO05D004944 4.6e-247 858.6 947 50.8
HanXRQChr03g0088961 Helianthus annuus HOM05D004501 ORTHO05D004944 3.9e-246 855.5 969 50.8
BcaB02g09084 Brassica carinata HOM05D004501 ORTHO05D004944 3.3e-245 852.4 959 49.7
GSVIVG01005813001 Vitis vinifera HOM05D004501 ORTHO05D004944 3.3e-245 852.4 820 55.1
Aqoxy7G03746 Aquilegia oxysepala HOM05D004501 ORTHO05D004944 3.6e-244 849.0 948 51.2
MSTRG.12127 Avicennia marina HOM05D004501 ORTHO05D004944 1.6e-239 833.6 687 62.0
Ah.12g054390 Amaranthus hybridus HOM05D004501 ORTHO05D004944 1.3e-238 830.5 893 51.2
A04p30230 Brassica napus HOM05D004501 ORTHO05D004944 6.6e-238 828.2 933 49.3
C04p67630 Brassica napus HOM05D004501 ORTHO05D004944 1.5e-237 827.0 933 48.4
Lsat_1_v5_gn_6_93441 Lactuca sativa HOM05D004501 ORTHO05D004944 4.3e-237 825.5 931 50.8
BraA04t18485Z Brassica rapa HOM05D004501 ORTHO05D004944 5.3e-235 818.5 960 48.2
BolC4t28262H Brassica oleracea HOM05D004501 ORTHO05D004944 1.5e-234 817.0 952 47.6
AUR62019990 Chenopodium quinoa HOM05D004501 ORTHO05D004944 2.6e-234 816.2 959 49.1
SalBow6G6502 Salvia bowleyana HOM05D004501 ORTHO05D004944 9.9e-234 814.3 687 60.1
Nitab4.5_0010602g0010 Nicotiana tabacum HOM05D004501 ORTHO05D004944 1.4e-232 810.4 966 49.3
Peaxi162Scf00346g00112 Petunia axillaris HOM05D004501 ORTHO05D004944 3.2e-232 809.3 970 48.9
Migut.A01144 Erythranthe guttata HOM05D004501 ORTHO05D004944 1.1e-229 800.8 659 61.9
BcaB01g03573 Brassica carinata HOM05D004501 ORTHO05D004944 8.1e-228 794.7 951 47.6
ATR1145G029 Amborella trichopoda HOM05D004501 ORTHO05D004944 2.0e-226 790.0 986 46.1
SGA_v2.0_scaffold104G30193 Striga asiatica HOM05D004501 ORTHO05D004944 4.2e-216 755.7 687 56.8
Nitab4.5_0001590g0040 Nicotiana tabacum HOM05D004501 ORTHO05D004944 4.3e-213 745.7 985 45.9
BcaC01g05462 Brassica carinata HOM05D004501 ORTHO05D004944 3.1e-211 739.6 987 44.9
Rhsim13G0032200 Rhododendron simsii HOM05D004501 ORTHO05D004944 3.4e-210 736.1 599 62.8
CDE11G0214 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 4.5e-210 735.7 796 50.3
Hma1.2p1_1196F.1_g265990 Hydrangea macrophylla HOM05D004501 ORTHO05D004944 9.3e-208 728.0 800 51.2
Os03g0737200 Oryza sativa ssp. japonica HOM05D004501 ORTHO05D004944 1.5e-202 710.7 956 45.0
Zm00001eb056470 Zea mays HOM05D004501 ORTHO05D004944 2.5e-197 693.3 748 49.7
CDE02G3094 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 1.3e-196 691.0 951 45.0
C03p26410 Brassica napus HOM05D004501 ORTHO05D004944 3.2e-192 676.4 969 42.4
SEGI_38311 Sequoiadendron giganteum HOM05D004501 ORTHO05D004944 9.4e-192 674.9 677 52.3
Dinv39174 Davidia involucrata HOM05D004501 ORTHO05D004944 5.0e-185 652.5 433 73.7
CSS0040587 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 7.5e-181 638.6 748 49.1
HPP92_002600 Vanilla planifolia HOM05D004501 ORTHO05D004944 2.1e-175 620.5 657 51.3
TAR374G0010 Trochodendron aralioides HOM05D004501 ORTHO05D004944 4.7e-175 619.4 433 70.4
Mapoly0088s0017 Marchantia polymorpha HOM05D004501 ORTHO05D004944 1.3e-169 601.3 767 45.1
SMO356G0217 Selaginella moellendorffii HOM05D004501 ORTHO05D004944 9.5e-152 542.0 637 46.3
Pp3c10_5410 Physcomitrium patens HOM05D004501 ORTHO05D004944 1.2e-151 541.6 959 38.1
BolC3t15027H Brassica oleracea HOM05D004501 ORTHO05D004944 5.2e-150 536.2 482 53.7
Pp3c24_4970 Physcomitrium patens HOM05D004501 ORTHO05D004944 6.8e-150 535.8 939 39.6
Zm00001eb215300 Zea mays HOM05D004501 ORTHO05D004944 3.4e-149 533.5 856 39.7
DCAR_020178 Daucus carota HOM05D004501 ORTHO05D004944 8.3e-148 528.9 683 46.4
CSS0032615 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 6.2e-143 512.7 697 44.5
Actinidia14399 Actinidia chinensis HOM05D004501 ORTHO05D004944 6.4e-132 476.1 749 40.3
unitig_0.g1052 Utricularia gibba HOM05D004501 ORTHO05D004944 1.4e-123 448.4 663 40.3
MD06G1054200 Malus domestica HOM05D004501 ORTHO05D004944 5.3e-118 429.9 515 48.5
CBR_g20363 Chara braunii HOM05D004501 ORTHO05D004944 8.4e-116 422.5 718 36.6
Cpa.g.sc776.4 Carica papaya HOM05D004501 ORTHO05D004944 6.7e-105 386.3 286 66.4
MD06G1054400 Malus domestica HOM05D004501 ORTHO05D004944 1.4e-102 378.6 279 69.2
AagrBONN_evm.TU.Sc2ySwM_368.3343 Anthoceros agrestis HOM05D004501 ORTHO05D004944 7.6e-101 372.9 486 43.4
TAR374G0951 Trochodendron aralioides HOM05D004501 ORTHO05D004944 2.5e-99 367.9 543 44.4
C04p07690 Brassica napus HOM05D004501 ORTHO05D004944 9.0e-94 349.4 441 45.6
CSS0028018 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 3.2e-83 314.3 202 75.2
DCAR_020177 Daucus carota HOM05D004501 ORTHO05D004944 2.7e-74 284.6 219 67.1
SHI29866 Sapria himalayana HOM05D004501 ORTHO05D004944 4.7e-74 283.9 236 62.3
CSS0011270 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 2.0e-69 268.5 177 72.9
HanXRQChr15g0495741 Helianthus annuus HOM05D004501 ORTHO05D004944 1.6e-66 258.8 244 57.4
FAN04G2417 Fragaria x ananassa HOM05D004501 ORTHO05D004944 6.1e-58 230.3 170 69.4
BolC4t22385H Brassica oleracea HOM05D004501 ORTHO05D004944 1.0e-57 229.6 237 46.8
Cpa.g.sc776.5 Carica papaya HOM05D004501 ORTHO05D004944 3.0e-57 228.0 148 73.6
CSS0007149 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 7.0e-54 216.9 132 78.8
BolC4t22386H Brassica oleracea HOM05D004501 ORTHO05D004944 1.2e-50 206.1 285 45.3
Zm00001eb142020 Zea mays HOM05D004501 ORTHO05D004944 4.9e-47 194.1 175 54.9
Zm00001eb047720 Zea mays HOM05D004501 ORTHO05D004944 1.5e-43 182.6 114 72.8
PRCOL_00000429 Prasinoderma coloniale HOM05D004501 ORTHO05D004944 1.2e-34 152.9 538 26.8
CAN.G201.38 Capsicum annuum HOM05D004501 ORTHO05D004944 1.6e-34 152.5 312 34.6
GSVIVG01006616001 Vitis vinifera HOM05D004501 ORTHO05D004944 9.2e-30 136.7 79 82.3
CAN.G26.29 Capsicum annuum HOM05D004501 ORTHO05D004944 6.0e-29 134.0 201 42.3
MCO16G596 Micromonas commoda HOM05D004501 ORTHO05D004944 9.2e-22 110.2 547 24.5
Cpa.g.sc776.3 Carica papaya HOM05D004501 ORTHO05D004944 6.0e-21 107.5 303 32.7
BcaC02g12114 Brassica carinata HOM05D004501 ORTHO05D023925 7.6e-16 90.5 318 28.3
Sed0019349 Sechium edule HOM05D004501 ORTHO05D004944 2.9e-15 88.6 96 44.8
CSS0048159 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 3.2e-14 85.1 43 88.4
Cre16.g683437 Chlamydomonas reinhardtii HOM05D004501 ORTHO05D004944 5.1e-12 77.8 554 24.0
Zm00001eb333660 Zea mays HOM05D000230 ORTHO05D010966 1.2e-08 66.6 47 61.7
Psat4g189680 Pisum sativum HOM05D004501 ORTHO05D004944 2.2e-07 62.4 35 88.6


User provided reference genes

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