Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g010400 Medicago truncatula HOM05D003840 ORTHO05D004565 8.8e-41 169.9 86 100.0
Phvul.007G273700 Phaseolus vulgaris HOM05D003840 ORTHO05D004565 4.2e-27 124.4 77 80.5
Phvul.011G177700 Phaseolus vulgaris HOM05D003840 ORTHO05D004565 4.2e-27 124.4 77 80.5
VMungo1080G0416 Vigna mungo HOM05D003840 ORTHO05D004565 1.2e-26 122.9 77 79.2
Glyma.13G278500 Glycine max HOM05D003840 ORTHO05D004565 8.0e-26 120.2 77 77.9
Glyma.12G223000 Glycine max HOM05D003840 ORTHO05D004565 1.8e-25 119.0 77 76.6
TPR.G38959 Trifolium pratense HOM05D003840 ORTHO05D004565 4.0e-25 117.9 91 68.1
Ca_01831_v3 Cicer arietinum L. HOM05D003840 ORTHO05D004565 8.8e-25 116.7 77 74.0
Psat6g240320 Pisum sativum HOM05D003840 ORTHO05D004565 2.2e-23 112.1 77 71.4
Lj5g0011990 Lotus japonicus HOM05D003840 ORTHO05D004565 6.3e-23 110.5 77 72.7
CsaV3_5G037440 Cucumis sativus L. HOM05D003840 ORTHO05D004565 8.3e-23 110.2 77 70.1
Lalb_Chr01g0016961 Lupinus albus HOM05D003840 ORTHO05D004565 8.3e-23 110.2 77 72.7
arahy.Tifrunner.gnm1.ann1.7MJ4MY Arachis hypogaea HOM05D003840 ORTHO05D004565 1.1e-22 109.8 79 68.4
arahy.Tifrunner.gnm1.ann1.D4F45X Arachis hypogaea HOM05D003840 ORTHO05D004565 1.1e-22 109.8 79 68.4
Lalb_Chr25g0286531 Lupinus albus HOM05D003840 ORTHO05D004565 1.1e-22 109.8 77 71.4
Medtr2g079510 Medicago truncatula HOM05D003840 ORTHO05D004565 1.4e-22 109.4 76 71.1
MELO3C033647.2 Cucumis melo HOM05D003840 ORTHO05D004565 1.8e-22 109.0 76 71.1
Ca_01830_v3 Cicer arietinum L. HOM05D003840 ORTHO05D004565 2.4e-22 108.6 72 76.4
Sed0025069 Sechium edule HOM05D003840 ORTHO05D004565 2.4e-22 108.6 77 72.7
Duzib213G0026 Durio zibethinus HOM05D003840 ORTHO05D004565 4.1e-22 107.8 76 69.7
FvH4_5g29580 Fragaria vesca HOM05D003840 ORTHO05D004565 5.3e-22 107.5 76 68.4
FAN13G0946 Fragaria x ananassa HOM05D003840 ORTHO05D004565 5.3e-22 107.5 76 68.4
FAN18G3753 Fragaria x ananassa HOM05D003840 ORTHO05D004565 5.3e-22 107.5 76 68.4
Thecc.06G008900 Theobroma cacao HOM05D003840 ORTHO05D004565 7.0e-22 107.1 76 68.4
MD00G1089700 Malus domestica HOM05D003840 ORTHO05D004565 1.2e-21 106.3 78 67.9
RcHm_v2.0_Chr7g0222551 Rosa chinensis HOM05D003840 ORTHO05D004565 1.2e-21 106.3 76 67.1
FAN04G1578 Fragaria x ananassa HOM05D003840 ORTHO05D004565 1.6e-21 105.9 76 67.1
FAN08G1280 Fragaria x ananassa HOM05D003840 ORTHO05D004565 1.6e-21 105.9 76 67.1
Manes.01G147800 Manihot esculenta HOM05D003840 ORTHO05D004565 2.7e-21 105.1 75 68.0
VMungo0540G2174 Vigna mungo HOM05D003840 ORTHO05D004565 2.7e-21 105.1 73 69.9
Cpa.g.sc80.41 Carica papaya HOM05D003840 ORTHO05D004565 3.5e-21 104.8 76 67.1
ClCG09G018660 Citrullus lanatus HOM05D003840 ORTHO05D004565 3.5e-21 104.8 77 70.1
RcHm_v2.0_Chr4g0433481 Rosa chinensis HOM05D003840 ORTHO05D004565 3.5e-21 104.8 76 67.1
Actinidia35256 Actinidia chinensis HOM05D003840 ORTHO05D004565 4.5e-21 104.4 77 68.8
Medtr4g081850 Medicago truncatula HOM05D003840 ORTHO05D004565 5.9e-21 104.0 76 68.4
TPR.G28203 Trifolium pratense HOM05D003840 ORTHO05D004565 5.9e-21 104.0 77 64.9
TWI53G0481 Tripterygium wilfordii HOM05D003840 ORTHO05D004565 5.9e-21 104.0 77 66.2
Gohir.A04G028700 Gossypium hirsutum HOM05D003840 ORTHO05D004565 7.7e-21 103.6 76 69.7
TAR626G1410 Trochodendron aralioides HOM05D003840 ORTHO05D004565 7.7e-21 103.6 76 69.7
Oeu060544.1 Olea europaea HOM05D003840 ORTHO05D004565 1.0e-20 103.2 77 66.2
TPR.G39016 Trifolium pratense HOM05D003840 ORTHO05D004565 1.0e-20 103.2 77 64.9
Oeu005421.1 Olea europaea HOM05D003840 ORTHO05D004565 1.3e-20 102.8 76 68.4
Thhalv10011345m.g Eutrema salsugineum HOM05D003840 ORTHO05D004565 2.2e-20 102.1 77 67.5
Gohir.D05G358600 Gossypium hirsutum HOM05D003840 ORTHO05D004565 2.2e-20 102.1 76 68.4
Gorai.009G434700 Gossypium raimondii HOM05D003840 ORTHO05D004565 2.2e-20 102.1 76 68.4
CSS0003611 Camellia sinensis var. sinensis HOM05D003840 ORTHO05D004565 2.9e-20 101.7 77 68.8
SGA_v2.0_scaffold73G24291 Striga asiatica HOM05D003840 ORTHO05D004565 2.9e-20 101.7 78 66.7
Eucgr.F03333 Eucalyptus grandis HOM05D003840 ORTHO05D004565 3.8e-20 101.3 77 67.5
SalBow7G0398 Salvia bowleyana HOM05D003840 ORTHO05D004565 3.8e-20 101.3 79 67.1
SalBow7G4534 Salvia bowleyana HOM05D003840 ORTHO05D004565 3.8e-20 101.3 79 67.1
Aa31LG10G2130 Aethionema arabicum HOM05D003840 ORTHO05D004565 5.0e-20 100.9 84 65.5
Ciclev10007878m.g Citrus clementina HOM05D003840 ORTHO05D004565 5.0e-20 100.9 77 66.2
Nn1g06588 Nelumbo nucifera HOM05D003840 ORTHO05D004565 5.0e-20 100.9 76 65.8
HPP92_027892 Vanilla planifolia HOM05D003840 ORTHO05D004565 6.5e-20 100.5 78 65.4
Nitab4.5_0011553g0010 Nicotiana tabacum HOM05D003840 ORTHO05D004565 1.1e-19 99.8 77 63.6
Rhsim04G0019800 Rhododendron simsii HOM05D003840 ORTHO05D004565 1.1e-19 99.8 77 63.6
Dinv08310 Davidia involucrata HOM05D003840 ORTHO05D004565 1.5e-19 99.4 77 63.6
Manes.03G112600 Manihot esculenta HOM05D003840 ORTHO05D004565 1.5e-19 99.4 77 67.5
Nitab4.5_0003769g0030 Nicotiana tabacum HOM05D003840 ORTHO05D004565 1.5e-19 99.4 77 63.6
PSO210G5630 Papaver somniferum HOM05D003840 ORTHO05D004565 1.5e-19 99.4 75 65.3
Prupe.4G184700 Prunus persica HOM05D003840 ORTHO05D004565 1.5e-19 99.4 78 62.8
Solyc07g063270.3 Solanum lycopersicum HOM05D003840 ORTHO05D004565 1.5e-19 99.4 77 63.6
Sopen07g031450 Solanum pennellii HOM05D003840 ORTHO05D004565 1.5e-19 99.4 77 63.6
THA.LOC104810482 Tarenaya hassleriana HOM05D003840 ORTHO05D004565 1.5e-19 99.4 77 66.2
PGSC0003DMG400012452 Solanum tuberosum HOM05D003840 ORTHO05D004565 1.9e-19 99.0 77 63.6
vmacro09541 Vaccinium macrocarpon HOM05D003840 ORTHO05D004565 1.9e-19 99.0 77 62.3
Atru.chr2.2716 Acer truncatum HOM05D003840 ORTHO05D004565 2.5e-19 98.6 72 66.7
BcaB07g33370 Brassica carinata HOM05D003840 ORTHO05D004565 2.5e-19 98.6 77 63.6
Cc05_g12240 Coffea canephora HOM05D003840 ORTHO05D004565 2.5e-19 98.6 79 63.3
Dinv18297 Davidia involucrata HOM05D003840 ORTHO05D004565 2.5e-19 98.6 79 64.6
TAR624G1142 Trochodendron aralioides HOM05D003840 ORTHO05D004565 2.5e-19 98.6 83 62.7
AL1G61320 Arabidopsis lyrata HOM05D003840 ORTHO05D004565 3.2e-19 98.2 77 63.6
Lj8A157T55 Lonicera japonica HOM05D003840 ORTHO05D004565 3.2e-19 98.2 77 64.9
Carub.0001s4212 Capsella rubella HOM05D003840 ORTHO05D004565 4.2e-19 97.8 77 64.9
Hma1.2p1_0148F.1_g066150 Hydrangea macrophylla HOM05D003840 ORTHO05D004565 4.2e-19 97.8 76 63.2
Sp1g39540 Schrenkiella parvula HOM05D003840 ORTHO05D004565 5.5e-19 97.4 78 62.8
BcaB02g10967 Brassica carinata HOM05D003840 ORTHO05D004565 7.2e-19 97.1 77 63.6
C06p14330 Brassica napus HOM05D003840 ORTHO05D004565 7.2e-19 97.1 77 63.6
Zm00001eb016990 Zea mays HOM05D003840 ORTHO05D004565 7.2e-19 97.1 84 60.7
BcaC08g44019 Brassica carinata HOM05D003840 ORTHO05D004565 9.4e-19 96.7 77 63.6
BolC6t36608H Brassica oleracea HOM05D003840 ORTHO05D004565 9.4e-19 96.7 77 63.6
PGR031G3608 Punica granatum HOM05D003840 ORTHO05D004565 9.4e-19 96.7 76 64.5
Peaxi162Scf00069g01212 Petunia axillaris HOM05D003840 ORTHO05D004565 1.2e-18 96.3 81 60.5
A06p01380 Brassica napus HOM05D003840 ORTHO05D004565 1.6e-18 95.9 77 63.6
BraA06t23360Z Brassica rapa HOM05D003840 ORTHO05D004565 1.6e-18 95.9 77 63.6
Potri.001G402500 Populus trichocarpa HOM05D003840 ORTHO05D004565 1.6e-18 95.9 79 60.8
THA.LOC104818066 Tarenaya hassleriana HOM05D003840 ORTHO05D004565 2.1e-18 95.5 77 62.3
Lsat_1_v5_gn_9_97121 Lactuca sativa HOM05D003840 ORTHO05D004565 2.7e-18 95.1 80 62.5
MD10G1052400 Malus domestica HOM05D003840 ORTHO05D004565 2.7e-18 95.1 78 62.8
QL08p020021 Quercus lobata HOM05D003840 ORTHO05D004565 2.7e-18 95.1 78 62.8
EL10Ac4g08140 Beta vulgaris HOM05D003840 ORTHO05D004565 4.7e-18 94.4 65 69.2
PSO832G0205 Papaver somniferum HOM05D003840 ORTHO05D004565 4.7e-18 94.4 75 62.7
CARHR043180 Cardamine hirsuta HOM05D003840 ORTHO05D004565 6.1e-18 94.0 77 62.3
FvH4_6g33850 Fragaria vesca HOM05D003840 ORTHO05D004565 6.1e-18 94.0 74 62.2
PSO832G2656 Papaver somniferum HOM05D003840 ORTHO05D004565 6.1e-18 94.0 73 67.1
Sabra16G0264000 Salix brachista HOM05D003840 ORTHO05D004565 6.1e-18 94.0 79 60.8
AT1G52980 Arabidopsis thaliana HOM05D003840 ORTHO05D004565 8.0e-18 93.6 77 61.0
MSTRG.15219 Avicennia marina HOM05D003840 ORTHO05D004565 8.0e-18 93.6 78 61.5
Sed0017316 Sechium edule HOM05D003840 ORTHO05D004565 8.0e-18 93.6 75 64.0
TWI73G0301 Tripterygium wilfordii HOM05D003840 ORTHO05D004565 1.0e-17 93.2 76 63.2
BcaC08g43481 Brassica carinata HOM05D003840 ORTHO05D004565 1.4e-17 92.8 77 62.3
C06p08670 Brassica napus HOM05D003840 ORTHO05D004565 1.4e-17 92.8 77 62.3
CANSAT56G3533 Cannabis sativa HOM05D003840 ORTHO05D004565 1.4e-17 92.8 76 63.2
Os03g0352400 Oryza sativa ssp. japonica HOM05D003840 ORTHO05D004565 1.4e-17 92.8 86 55.8
Haze_09463 Corylus avellana HOM05D003840 ORTHO05D004565 2.3e-17 92.0 85 56.5
AUR62034278 Chenopodium quinoa HOM05D003840 ORTHO05D004565 3.0e-17 91.7 65 66.2
FAN14G4652 Fragaria x ananassa HOM05D003840 ORTHO05D004565 3.0e-17 91.7 74 60.8
PSO782G4342 Papaver somniferum HOM05D003840 ORTHO05D004565 3.0e-17 91.7 74 63.5
Sc07g0002600 Simmondsia chinensis HOM05D003840 ORTHO05D004565 3.0e-17 91.7 65 67.7
ATR0680G057 Amborella trichopoda HOM05D003840 ORTHO05D004565 4.0e-17 91.3 86 58.1
Migut.M00853 Erythranthe guttata HOM05D003840 ORTHO05D004565 5.2e-17 90.9 79 58.2
unitig_46.g18324 Utricularia gibba HOM05D003840 ORTHO05D004565 5.2e-17 90.9 77 61.0
HanXRQChr13g0407421 Helianthus annuus HOM05D003840 ORTHO05D004565 6.8e-17 90.5 81 58.0
DCAR_013090 Daucus carota HOM05D003840 ORTHO05D004565 8.8e-17 90.1 83 56.6
Aqoxy4G01004 Aquilegia oxysepala HOM05D003840 ORTHO05D004565 1.5e-16 89.4 85 60.0
Pp3c1_3230 Physcomitrium patens HOM05D003840 ORTHO05D004565 4.4e-16 87.8 78 59.0
SEGI_28100 Sequoiadendron giganteum HOM05D003840 ORTHO05D004565 1.7e-15 85.9 81 55.6
Cre07.g340050 Chlamydomonas reinhardtii HOM05D003840 ORTHO05D004565 2.2e-15 85.5 86 54.7
Hund22938 Selenicereus undatus HOM05D003840 ORTHO05D004565 2.2e-15 85.5 78 61.5
SHI05032 Sapria himalayana HOM05D003840 ORTHO05D004565 2.8e-15 85.1 83 57.8
SMO367G1211 Selaginella moellendorffii HOM05D003840 ORTHO05D004565 2.8e-15 85.1 78 59.0
ECA240G0083 Erigeron canadensis HOM05D003840 ORTHO05D004565 6.3e-15 84.0 79 55.7
Mapoly0122s0018 Marchantia polymorpha HOM05D003840 ORTHO05D004565 6.3e-15 84.0 77 61.0
Medtr2g079540 Medicago truncatula HOM05D003840 ORTHO05D004565 1.1e-14 83.2 61 75.4
Ah.03g144680 Amaranthus hybridus HOM05D003840 ORTHO05D004565 2.4e-14 82.0 80 56.2
AagrBONN_evm.TU.Sc2ySwM_117.381 Anthoceros agrestis HOM05D003840 ORTHO05D004565 9.1e-14 80.1 76 56.6
AagrBONN_evm.TU.Sc2ySwM_344.5148 Anthoceros agrestis HOM05D003840 ORTHO05D004565 9.1e-14 80.1 76 56.6
SGA_v2.0_scaffold34G13732 Striga asiatica HOM05D003840 ORTHO05D004565 2.0e-13 79.0 76 52.6
Manes.03G112800 Manihot esculenta HOM05D003840 ORTHO05D004565 5.9e-13 77.4 76 59.2
Peaxi162Scf00052g02012 Petunia axillaris HOM05D003840 ORTHO05D004565 2.9e-12 75.1 51 70.6
Solyc07g063280.3 Solanum lycopersicum HOM05D003840 ORTHO05D004565 6.6e-12 73.9 46 71.7
CBR_g28541 Chara braunii HOM05D003840 ORTHO05D004565 1.9e-11 72.4 46 67.4
PGSC0003DMG400012453 Solanum tuberosum HOM05D003840 ORTHO05D004565 3.3e-11 71.6 46 69.6
Nitab4.5_0010521g0010 Nicotiana tabacum HOM05D003840 ORTHO05D004565 4.2e-11 71.2 50 66.0
Nitab4.5_0003769g0100 Nicotiana tabacum HOM05D003840 ORTHO05D004565 1.2e-10 69.7 50 64.0
MCO07G526 Micromonas commoda HOM05D003840 ORTHO05D004565 2.1e-10 68.9 47 66.0
Ah.02g127520 Amaranthus hybridus HOM05D003840 ORTHO05D004565 6.1e-10 67.4 69 53.6
PSO210G3517 Papaver somniferum HOM05D003840 ORTHO05D004565 1.4e-09 66.2 41 68.3
CiPaw.08G146100 Carya illinoinensis HOM05D003840 ORTHO05D004565 5.7e-08 60.8 37 73.0
CiPaw.12G120400 Carya illinoinensis HOM05D003840 ORTHO05D004565 5.7e-08 60.8 37 73.0
PRCOL_00004437 Prasinoderma coloniale HOM05D003840 ORTHO05D004565 7.5e-08 60.5 67 49.3
GSVIVG01014369001 Vitis vinifera HOM05D003840 ORTHO05D004565 9.8e-08 60.1 37 70.3
Lj3g0017419 Lotus japonicus HOM05D003840 ORTHO05D004565 1.3e-07 59.7 35 71.4
COL.COLO4_09425 Corchorus olitorius HOM05D003840 ORTHO05D004565 2.2e-07 58.9 37 67.6
Cfa020553 Carpinus fangiana HOM05D003840 ORTHO05D004565 3.7e-07 58.2 37 64.9
PGSC0003DMG400015436 Solanum tuberosum HOM05D003840 ORTHO05D004565 8.3e-07 57.0 36 66.7
PGSC0003DMG400016932 Solanum tuberosum HOM05D003840 ORTHO05D004565 1.4e-06 56.2 36 66.7
CAN.G162.71 Capsicum annuum HOM05D003840 ORTHO05D004565 7.0e-06 53.9 36 63.9
MD03G1224500 Malus domestica HOM05D003840 ORTHO05D004565 7.0e-06 53.9 31 77.4


User provided reference genes

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