Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g009240 Medicago truncatula HOM05D005474 ORTHO05D006551 1.5e-250 869.0 418 100.0
Ca_24501_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 2.7e-220 768.5 421 87.6
Ca_29734_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 2.7e-220 768.5 421 87.6
Psat2g185600 Pisum sativum HOM05D005474 ORTHO05D006551 3.5e-220 768.1 420 86.9
TPR.G25600 Trifolium pratense HOM05D005474 ORTHO05D006551 2.3e-219 765.4 420 88.1
Glyma.01G225700 Glycine max HOM05D005474 ORTHO05D006551 2.1e-204 715.7 420 81.0
Phvul.002G164600 Phaseolus vulgaris HOM05D005474 ORTHO05D006551 1.4e-195 686.4 420 78.8
Lalb_Chr05g0211531 Lupinus albus HOM05D005474 ORTHO05D006551 5.7e-194 681.0 423 76.8
VMungo1215G0769 Vigna mungo HOM05D005474 ORTHO05D006551 6.3e-193 677.6 420 78.1
LjContig00312_ERROPOS870357g0016174 Lotus japonicus HOM05D005474 ORTHO05D006551 4.7e-188 661.4 424 75.7
Lalb_Chr16g0376951 Lupinus albus HOM05D005474 ORTHO05D006551 1.4e-187 659.8 421 75.8
Glyma.11G017200 Glycine max HOM05D005474 ORTHO05D006551 4.4e-186 654.8 392 79.6
arahy.Tifrunner.gnm1.ann1.Z0ACGZ Arachis hypogaea HOM05D005474 ORTHO05D006551 1.2e-180 636.7 496 63.7
arahy.Tifrunner.gnm1.ann1.1UFI8K Arachis hypogaea HOM05D005474 ORTHO05D006551 2.4e-176 622.5 524 60.3
Prupe.5G120100 Prunus persica HOM05D005474 ORTHO05D006551 1.6e-167 593.2 420 66.9
MD14G1128900 Malus domestica HOM05D005474 ORTHO05D006551 7.7e-167 590.9 416 67.5
QL02p030435 Quercus lobata HOM05D005474 ORTHO05D006551 1.3e-166 590.1 412 68.7
Dinv38831 Davidia involucrata HOM05D005474 ORTHO05D006551 5.6e-165 584.7 417 67.4
Potri.003G140000 Populus trichocarpa HOM05D005474 ORTHO05D006551 1.6e-164 583.2 416 66.3
Atru.chr9.1979 Acer truncatum HOM05D005474 ORTHO05D006551 3.6e-164 582.0 415 67.0
Atru.chr9.1994 Acer truncatum HOM05D005474 ORTHO05D006551 6.1e-164 581.3 415 67.0
MD06G1107100 Malus domestica HOM05D005474 ORTHO05D006551 6.1e-164 581.3 416 66.3
Actinidia22160 Actinidia chinensis HOM05D005474 ORTHO05D006551 4.0e-163 578.6 417 65.5
FvH4_5g04600 Fragaria vesca HOM05D005474 ORTHO05D006551 8.9e-163 577.4 419 64.9
CSS0001924 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 1.5e-162 576.6 428 64.3
FAN08G2748 Fragaria x ananassa HOM05D005474 ORTHO05D006551 2.6e-162 575.9 419 65.2
FAN18G3330 Fragaria x ananassa HOM05D005474 ORTHO05D006551 5.7e-162 574.7 419 64.7
RcHm_v2.0_Chr7g0194791 Rosa chinensis HOM05D005474 ORTHO05D006551 5.7e-162 574.7 420 66.0
FAN18G1504 Fragaria x ananassa HOM05D005474 ORTHO05D006551 9.8e-162 573.9 419 64.4
FAN04G1263 Fragaria x ananassa HOM05D005474 ORTHO05D006551 1.3e-161 573.5 419 65.2
COL.COLO4_10702 Corchorus olitorius HOM05D005474 ORTHO05D006551 2.4e-160 569.3 421 64.8
FAN13G0565 Fragaria x ananassa HOM05D005474 ORTHO05D006551 1.2e-159 567.0 418 64.6
Potri.001G091600 Populus trichocarpa HOM05D005474 ORTHO05D006551 2.7e-159 565.8 425 64.5
Ciclev10020308m.g Citrus clementina HOM05D005474 ORTHO05D006551 2.3e-158 562.8 414 63.8
Cfa012014 Carpinus fangiana HOM05D005474 ORTHO05D006551 3.0e-158 562.4 418 65.8
Rhsim02G0243400 Rhododendron simsii HOM05D005474 ORTHO05D006551 3.9e-158 562.0 416 64.4
Haze_09055 Corylus avellana HOM05D005474 ORTHO05D006551 6.6e-158 561.2 418 65.6
GSVIVG01019532001 Vitis vinifera HOM05D005474 ORTHO05D006551 6.6e-158 561.2 413 65.4
Cc08_g16070 Coffea canephora HOM05D005474 ORTHO05D006551 1.1e-157 560.5 420 64.3
Manes.01G049100 Manihot esculenta HOM05D005474 ORTHO05D006551 2.5e-157 559.3 422 65.4
CANSAT21G1635 Cannabis sativa HOM05D005474 ORTHO05D006551 7.3e-157 557.8 418 65.3
Eucgr.D01738 Eucalyptus grandis HOM05D005474 ORTHO05D006551 8.0e-156 554.3 415 63.6
Sabra01G0068000 Salix brachista HOM05D005474 ORTHO05D006551 5.2e-155 551.6 429 63.2
TAR629G2557 Trochodendron aralioides HOM05D005474 ORTHO05D006551 6.8e-155 551.2 416 62.5
PGR042G2806 Punica granatum HOM05D005474 ORTHO05D006551 2.0e-154 549.7 421 63.2
Thecc.03G298100 Theobroma cacao HOM05D005474 ORTHO05D006551 3.4e-154 548.9 417 63.5
Lj2C167G11 Lonicera japonica HOM05D005474 ORTHO05D006551 1.3e-153 547.0 412 62.9
vmacro11424 Vaccinium macrocarpon HOM05D005474 ORTHO05D006551 1.7e-153 546.6 444 60.6
Gohir.D12G237600 Gossypium hirsutum HOM05D005474 ORTHO05D006551 6.4e-153 544.7 417 63.1
Duzib084G1138 Durio zibethinus HOM05D005474 ORTHO05D006551 8.3e-153 544.3 417 62.6
Gohir.A12G236400 Gossypium hirsutum HOM05D005474 ORTHO05D006551 8.3e-153 544.3 417 63.1
Gorai.008G254400 Gossypium raimondii HOM05D005474 ORTHO05D006551 1.1e-152 543.9 417 62.8
MELO3C005754.2 Cucumis melo HOM05D005474 ORTHO05D006551 1.2e-151 540.4 412 64.8
CsaV3_5G001990 Cucumis sativus L. HOM05D005474 ORTHO05D006551 1.0e-150 537.3 418 64.1
ClCG01G001840 Citrullus lanatus HOM05D005474 ORTHO05D006551 3.0e-150 535.8 415 63.4
TAR374G0037 Trochodendron aralioides HOM05D005474 ORTHO05D006551 3.0e-150 535.8 415 62.4
Cpa.g.sc128.67 Carica papaya HOM05D005474 ORTHO05D006551 3.9e-150 535.4 414 62.8
Sed0014344 Sechium edule HOM05D005474 ORTHO05D006551 8.6e-150 534.3 418 62.9
Sed0020716 Sechium edule HOM05D005474 ORTHO05D006551 2.1e-148 529.6 419 61.6
TWI12G0204 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 2.1e-148 529.6 418 61.0
Oeu063522.1 Olea europaea HOM05D005474 ORTHO05D006551 2.8e-148 529.3 406 61.3
Sabra03G0101000 Salix brachista HOM05D005474 ORTHO05D006551 1.1e-147 527.3 522 52.7
CiPaw.11G121500 Carya illinoinensis HOM05D005474 ORTHO05D006551 1.4e-147 526.9 391 65.0
TWI56G1439 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 1.8e-147 526.6 423 60.5
Aqoxy7G00102 Aquilegia oxysepala HOM05D005474 ORTHO05D006551 4.0e-147 525.4 417 59.2
Hund14220 Selenicereus undatus HOM05D005474 ORTHO05D006551 8.9e-147 524.2 426 58.0
CAN.G532.121 Capsicum annuum HOM05D005474 ORTHO05D006551 3.5e-143 512.3 413 58.4
Solyc08g082320.3 Solanum lycopersicum HOM05D005474 ORTHO05D006551 5.1e-142 508.4 421 57.7
Nitab4.5_0002782g0080 Nicotiana tabacum HOM05D005474 ORTHO05D006551 1.5e-141 506.9 411 58.6
PGSC0003DMG400012286 Solanum tuberosum HOM05D005474 ORTHO05D006551 1.2e-140 503.8 413 56.9
AUR62019839 Chenopodium quinoa HOM05D005474 ORTHO05D006551 2.1e-140 503.1 420 57.1
Sopen08g030580 Solanum pennellii HOM05D005474 ORTHO05D006551 2.1e-140 503.1 417 56.6
Migut.E01253 Erythranthe guttata HOM05D005474 ORTHO05D006551 8.1e-140 501.1 420 58.1
HanXRQChr03g0083521 Helianthus annuus HOM05D005474 ORTHO05D006551 1.8e-139 500.0 387 62.0
AUR62010840 Chenopodium quinoa HOM05D005474 ORTHO05D006551 2.3e-139 499.6 420 57.1
Lsat_1_v5_gn_6_83981 Lactuca sativa HOM05D005474 ORTHO05D006551 2.3e-139 499.6 414 59.4
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 3.4e-138 495.7 418 56.7
CiPaw.12G083000 Carya illinoinensis HOM05D005474 ORTHO05D006551 4.4e-138 495.4 419 57.8
Peaxi162Scf00074g00931 Petunia axillaris HOM05D005474 ORTHO05D006551 6.4e-137 491.5 397 58.7
SalBow1G1678 Salvia bowleyana HOM05D005474 ORTHO05D006551 1.1e-136 490.7 419 56.8
ECA240G1977 Erigeron canadensis HOM05D005474 ORTHO05D006551 1.4e-136 490.3 414 58.9
SalBow8G3265 Salvia bowleyana HOM05D005474 ORTHO05D006551 1.4e-136 490.3 416 57.0
SalBow1G8106 Salvia bowleyana HOM05D005474 ORTHO05D006551 4.1e-136 488.8 419 56.6
PSO170G1345 Papaver somniferum HOM05D005474 ORTHO05D006551 2.7e-135 486.1 437 56.5
Sc22g0005000 Simmondsia chinensis HOM05D005474 ORTHO05D006551 1.3e-134 483.8 416 57.0
MSTRG.13885 Avicennia marina HOM05D005474 ORTHO05D006551 1.1e-133 480.7 461 51.4
unitig_0.g387 Utricularia gibba HOM05D005474 ORTHO05D006551 5.6e-133 478.4 410 56.1
Os06g0529800 Oryza sativa ssp. japonica HOM05D005474 ORTHO05D006551 1.6e-132 476.9 416 54.3
THA.LOC104806435 Tarenaya hassleriana HOM05D005474 ORTHO05D006551 2.8e-132 476.1 416 56.5
EL10Ac5g12915 Beta vulgaris HOM05D005474 ORTHO05D006551 1.1e-131 474.2 455 52.5
CARHR231240 Cardamine hirsuta HOM05D005474 ORTHO05D006551 2.4e-131 473.0 415 55.7
Sp7g21810 Schrenkiella parvula HOM05D005474 ORTHO05D006551 4.0e-131 472.2 419 54.7
HPP92_026770 Vanilla planifolia HOM05D005474 ORTHO05D006551 6.9e-131 471.5 430 53.0
Zm00001eb277940 Zea mays HOM05D005474 ORTHO05D006551 2.6e-130 469.5 414 54.6
ATR0602G179 Amborella trichopoda HOM05D005474 ORTHO05D006551 7.6e-130 468.0 462 52.2
Thhalv10025382m.g Eutrema salsugineum HOM05D005474 ORTHO05D006551 3.8e-129 465.7 415 55.2
Aa31LG6G7070 Aethionema arabicum HOM05D005474 ORTHO05D006551 6.4e-129 464.9 416 56.5
BolC1t01832H Brassica oleracea HOM05D005474 ORTHO05D006551 5.4e-128 461.8 415 53.7
BcaNung01092 Brassica carinata HOM05D005474 ORTHO05D006551 7.1e-128 461.5 415 53.7
Carub.0007s1727 Capsella rubella HOM05D005474 ORTHO05D006551 2.7e-127 459.5 428 54.0
PSO063G4762 Papaver somniferum HOM05D005474 ORTHO05D006551 7.8e-127 458.0 403 58.6
Oeu034333.1 Olea europaea HOM05D005474 ORTHO05D006551 1.0e-126 457.6 369 60.2
BcaC09g50941 Brassica carinata HOM05D005474 ORTHO05D006551 6.6e-126 454.9 415 52.3
C01p19060 Brassica napus HOM05D005474 ORTHO05D006551 6.6e-126 454.9 415 52.3
AL7G29500 Arabidopsis lyrata HOM05D005474 ORTHO05D006551 1.1e-125 454.1 459 51.9
AT4G23860 Arabidopsis thaliana HOM05D005474 ORTHO05D006551 3.3e-125 452.6 456 51.1
BraA01t01454Z Brassica rapa HOM05D005474 ORTHO05D006551 4.3e-125 452.2 415 52.5
A01p15160 Brassica napus HOM05D005474 ORTHO05D006551 5.6e-125 451.8 415 52.5
Hma1.2p1_1746F.1_g300392 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 3.5e-119 432.6 341 61.3
Hma1.2p1_1746F.1_g300400 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 3.5e-119 432.6 341 61.3
SMO200G0193 Selaginella moellendorffii HOM05D005474 ORTHO05D006551 2.8e-108 396.4 410 47.3
Pp3c7_4800 Physcomitrium patens HOM05D005474 ORTHO05D006551 8.4e-105 384.8 436 45.2
Pp3c18_8230 Physcomitrium patens HOM05D005474 ORTHO05D006551 3.0e-102 376.3 415 46.3
Mapoly0095s0049 Marchantia polymorpha HOM05D005474 ORTHO05D006551 5.1e-102 375.6 431 43.4
MBI06_g08456_MAGBIO Magnolia biondii HOM05D005474 ORTHO05D006551 1.8e-99 367.1 420 46.4
CDE02G2859 Ceratophyllum demersum HOM05D002290 ORTHO05D002532 1.3e-94 350.9 228 67.1
PGSC0003DMG401028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 2.4e-91 340.1 288 56.2
Nn3g19016 Nelumbo nucifera HOM05D005474 ORTHO05D006551 1.0e-86 324.7 419 43.2
CSS0018913 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 1.5e-85 320.9 170 81.2
DCAR_027700 Daucus carota HOM05D005474 ORTHO05D006551 1.8e-83 313.9 344 47.4
SEGI_30990 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 2.7e-79 300.1 425 38.6
CSS0034140 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 8.8e-78 295.0 141 88.7
TAR636G0569 Trochodendron aralioides HOM05D005474 ORTHO05D006551 5.3e-75 285.8 170 75.9
CBR_g50475 Chara braunii HOM05D005474 ORTHO05D006551 7.0e-75 285.4 543 33.7
CSS0004779 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 7.0e-67 258.8 144 78.5
PSO017G5523 Papaver somniferum HOM05D005474 ORTHO05D006551 5.5e-56 222.6 121 77.7
CSS0021446 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 6.6e-49 199.1 91 90.1
PGSC0003DMG400011405 Solanum tuberosum HOM05D005474 ORTHO05D006551 1.5e-40 171.4 200 45.5
unitig_0.g2293 Utricularia gibba HOM05D005474 ORTHO05D006551 1.6e-31 141.4 172 44.2
Duzib084G0281 Durio zibethinus HOM05D005474 ORTHO05D006551 3.4e-29 133.7 76 75.0
Hma1.2p1_1746F.1_g300390 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 9.2e-27 125.6 73 79.5
Hma1.2p1_1746F.1_g300398 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 9.2e-27 125.6 73 79.5
SEGI_08425 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 1.7e-25 121.3 64 81.2
Ah.07g197430 Amaranthus hybridus HOM05D005474 ORTHO05D006551 6.6e-25 119.4 97 56.7
SHI06991 Sapria himalayana HOM05D005474 ORTHO05D006551 1.1e-22 112.1 59 78.0
CDE08G0829 Ceratophyllum demersum HOM05D005474 ORTHO05D006551 1.9e-19 101.3 67 68.7
Cfa025394 Carpinus fangiana HOM05D005474 ORTHO05D122676 4.7e-15 86.7 158 34.2
MBI18_g28764_MAGBIO Magnolia biondii HOM05D005474 ORTHO05D006551 3.8e-12 77.0 61 63.9
PGSC0003DMG402028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 3.8e-12 77.0 76 50.0
Nitab4.5_0000829g0030 Nicotiana tabacum HOM05D005474 ORTHO05D006551 3.5e-10 70.5 75 46.7


User provided reference genes

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