Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr4g037245 Medicago truncatula HOM05D004048 ORTHO05D004859 1.1e-101 373.2 187 100.0
Medtr8g028555 Medicago truncatula HOM05D004048 ORTHO05D004859 3.7e-84 315.1 203 82.8
Psat4g156920 Pisum sativum HOM05D004048 ORTHO05D004859 5.0e-81 304.7 203 80.3
TPR.G28287 Trifolium pratense HOM05D004048 ORTHO05D004859 3.2e-80 302.0 203 79.3
Lj1g0027864 Lotus japonicus HOM05D004048 ORTHO05D004859 4.6e-79 298.1 203 77.8
Lj5g0009706 Lotus japonicus HOM05D004048 ORTHO05D004859 3.0e-78 295.4 203 77.3
arahy.Tifrunner.gnm1.ann1.8BBS1S Arachis hypogaea HOM05D004048 ORTHO05D004859 3.9e-78 295.0 203 77.3
arahy.Tifrunner.gnm1.ann1.9CR96V Arachis hypogaea HOM05D004048 ORTHO05D004859 3.9e-78 295.0 203 77.3
COL.COLO4_12778 Corchorus olitorius HOM05D004048 ORTHO05D004859 8.8e-78 293.9 203 76.8
Gohir.A08G032200 Gossypium hirsutum HOM05D004048 ORTHO05D004859 8.8e-78 293.9 203 77.3
Gohir.D08G043100 Gossypium hirsutum HOM05D004048 ORTHO05D004859 8.8e-78 293.9 203 77.3
Gorai.004G041700 Gossypium raimondii HOM05D004048 ORTHO05D004859 8.8e-78 293.9 203 77.3
Phvul.010G104900 Phaseolus vulgaris HOM05D004048 ORTHO05D004859 8.8e-78 293.9 203 76.8
VMungo0331G0386 Vigna mungo HOM05D004048 ORTHO05D004859 1.5e-77 293.1 203 76.4
CAN.G439.29 Capsicum annuum HOM05D004048 ORTHO05D004859 3.3e-77 292.0 203 75.9
Potri.014G090500 Populus trichocarpa HOM05D004048 ORTHO05D004859 4.3e-77 291.6 203 76.4
Peaxi162Scf00217g00711 Petunia axillaris HOM05D004048 ORTHO05D004859 5.7e-77 291.2 203 75.4
arahy.Tifrunner.gnm1.ann1.8G3C0P Arachis hypogaea HOM05D004048 ORTHO05D004859 9.7e-77 290.4 203 75.9
MBI03_g34597_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 1.3e-76 290.0 203 75.4
Nitab4.5_0000615g0020 Nicotiana tabacum HOM05D004048 ORTHO05D004859 1.7e-76 289.7 203 75.4
TPR.G37181 Trifolium pratense HOM05D004048 ORTHO05D004859 1.7e-76 289.7 203 75.9
Hma1.2p1_0335F.1_g128890 Hydrangea macrophylla HOM05D004048 ORTHO05D004859 2.2e-76 289.3 203 74.9
Thecc.01G352400 Theobroma cacao HOM05D004048 ORTHO05D004859 2.2e-76 289.3 203 75.4
Lj9C589T5 Lonicera japonica HOM05D004048 ORTHO05D004859 2.8e-76 288.9 203 74.9
Glyma.07G064600 Glycine max HOM05D004048 ORTHO05D004859 3.7e-76 288.5 203 75.4
PSO170G0644 Papaver somniferum HOM05D004048 ORTHO05D004859 3.7e-76 288.5 203 73.9
Cc02_g21240 Coffea canephora HOM05D004048 ORTHO05D004859 4.8e-76 288.1 203 75.4
PSO063G1481 Papaver somniferum HOM05D004048 ORTHO05D004859 4.8e-76 288.1 203 73.9
CSS0029554 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 6.3e-76 287.7 203 75.4
CSS0027402 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 8.2e-76 287.3 203 75.4
Eucgr.B01988 Eucalyptus grandis HOM05D004048 ORTHO05D004859 8.2e-76 287.3 203 73.4
Solyc09g007130.3 Solanum lycopersicum HOM05D004048 ORTHO05D004859 8.2e-76 287.3 203 74.4
Aqoxy5G04084 Aquilegia oxysepala HOM05D004048 ORTHO05D004859 1.4e-75 286.6 203 74.4
Ciclev10020577m.g Citrus clementina HOM05D004048 ORTHO05D004859 1.4e-75 286.6 203 74.9
Dinv32522 Davidia involucrata HOM05D004048 ORTHO05D004859 1.4e-75 286.6 203 74.9
Ca_03490_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 1.8e-75 286.2 229 70.3
Gohir.D08G154300 Gossypium hirsutum HOM05D004048 ORTHO05D004859 2.4e-75 285.8 203 73.9
Gorai.004G160400 Gossypium raimondii HOM05D004048 ORTHO05D004859 2.4e-75 285.8 203 73.9
MD07G1131200 Malus domestica HOM05D004048 ORTHO05D004859 2.4e-75 285.8 203 74.9
Oeu054354.2 Olea europaea HOM05D004048 ORTHO05D004859 2.4e-75 285.8 195 77.4
Sabra14G0065600 Salix brachista HOM05D004048 ORTHO05D004859 2.4e-75 285.8 203 74.9
PGSC0003DMG400002011 Solanum tuberosum HOM05D004048 ORTHO05D004859 2.4e-75 285.8 203 73.4
TAR375G1056 Trochodendron aralioides HOM05D004048 ORTHO05D004859 2.4e-75 285.8 203 74.4
Sopen09g002000 Solanum pennellii HOM05D004048 ORTHO05D004859 3.1e-75 285.4 203 73.9
Actinidia10075 Actinidia chinensis HOM05D004048 ORTHO05D004859 4.1e-75 285.0 203 73.9
Hund27241 Selenicereus undatus HOM05D004048 ORTHO05D004859 4.1e-75 285.0 203 73.9
SGA_v2.0_scaffold4G02279 Striga asiatica HOM05D004048 ORTHO05D004859 4.1e-75 285.0 203 73.4
AT2G46110 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 5.3e-75 284.6 203 74.4
Migut.B01799 Erythranthe guttata HOM05D004048 ORTHO05D004859 5.3e-75 284.6 203 73.9
Lalb_Chr17g0338041 Lupinus albus HOM05D004048 ORTHO05D004859 5.3e-75 284.6 203 74.9
Prupe.2G177600 Prunus persica HOM05D004048 ORTHO05D004859 5.3e-75 284.6 203 73.9
AL5G43890 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 9.1e-75 283.9 203 73.4
Sp5g01880 Schrenkiella parvula HOM05D004048 ORTHO05D004859 9.1e-75 283.9 203 74.4
Manes.05G029300 Manihot esculenta HOM05D004048 ORTHO05D004859 1.2e-74 283.5 203 74.4
Rhsim07G0010400 Rhododendron simsii HOM05D004048 ORTHO05D004859 1.2e-74 283.5 194 76.8
Sc01g0003210 Simmondsia chinensis HOM05D004048 ORTHO05D004859 1.2e-74 283.5 203 73.4
AUR62022619 Chenopodium quinoa HOM05D004048 ORTHO05D004859 1.5e-74 283.1 203 75.4
PGR004G0897 Punica granatum HOM05D004048 ORTHO05D004859 1.5e-74 283.1 203 72.9
QL04p055532 Quercus lobata HOM05D004048 ORTHO05D004859 1.5e-74 283.1 203 73.4
TWI23G0617 Tripterygium wilfordii HOM05D004048 ORTHO05D004859 1.5e-74 283.1 203 72.9
AUR62004413 Chenopodium quinoa HOM05D004048 ORTHO05D004859 2.0e-74 282.7 203 75.4
Sp4g28180 Schrenkiella parvula HOM05D004048 ORTHO05D004859 2.0e-74 282.7 203 73.9
AT3G61530 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 2.6e-74 282.3 203 72.9
Carub.0004s2881 Capsella rubella HOM05D004048 ORTHO05D004859 3.4e-74 282.0 203 72.9
Duzib268G0835 Durio zibethinus HOM05D004048 ORTHO05D004859 3.4e-74 282.0 203 72.9
Nn1g01686 Nelumbo nucifera HOM05D004048 ORTHO05D004859 3.4e-74 282.0 203 73.4
vmacro13227 Vaccinium macrocarpon HOM05D004048 ORTHO05D004859 3.4e-74 282.0 204 74.0
Aa31LG10G15450 Aethionema arabicum HOM05D004048 ORTHO05D004859 7.7e-74 280.8 203 72.9
THA.LOC104817317 Tarenaya hassleriana HOM05D004048 ORTHO05D004859 7.7e-74 280.8 203 72.9
BcaB02g07374 Brassica carinata HOM05D004048 ORTHO05D004859 1.0e-73 280.4 203 72.4
BcaC08g45130 Brassica carinata HOM05D004048 ORTHO05D004859 1.0e-73 280.4 203 72.4
A07p25550 Brassica napus HOM05D004048 ORTHO05D004859 1.0e-73 280.4 203 72.4
C06p27540 Brassica napus HOM05D004048 ORTHO05D004859 1.0e-73 280.4 203 72.4
BolC6t37921H Brassica oleracea HOM05D004048 ORTHO05D004859 1.0e-73 280.4 203 72.4
BraA07t30196Z Brassica rapa HOM05D004048 ORTHO05D004859 1.0e-73 280.4 203 72.4
Thhalv10001521m.g Eutrema salsugineum HOM05D004048 ORTHO05D004859 1.3e-73 280.0 203 72.9
CANSAT56G4107 Cannabis sativa HOM05D004048 ORTHO05D004859 1.7e-73 279.6 203 73.4
EL10Ac1g00354 Beta vulgaris HOM05D004048 ORTHO05D004859 2.2e-73 279.3 203 73.9
unitig_60.g25627 Utricularia gibba HOM05D004048 ORTHO05D004859 2.2e-73 279.3 199 74.9
HanXRQChr17g0562171 Helianthus annuus HOM05D004048 ORTHO05D004859 2.9e-73 278.9 203 73.9
C08p36390 Brassica napus HOM05D004048 ORTHO05D004859 3.8e-73 278.5 203 71.9
A09p53600 Brassica napus HOM05D004048 ORTHO05D004859 6.5e-73 277.7 203 71.9
BraA09t40782Z Brassica rapa HOM05D004048 ORTHO05D004859 6.5e-73 277.7 203 71.9
BcaC07g40651 Brassica carinata HOM05D004048 ORTHO05D004859 8.5e-73 277.3 203 71.4
BolC8t51222H Brassica oleracea HOM05D004048 ORTHO05D004859 8.5e-73 277.3 203 71.4
Atru.chr7.1494 Acer truncatum HOM05D004048 ORTHO05D004859 1.9e-72 276.2 203 72.9
ECA234G0147 Erigeron canadensis HOM05D004048 ORTHO05D004859 1.9e-72 276.2 194 76.3
Haze_15565 Corylus avellana HOM05D004048 ORTHO05D004859 2.5e-72 275.8 194 73.7
Carub.0005s2822 Capsella rubella HOM05D004048 ORTHO05D004859 3.2e-72 275.4 203 71.4
DCAR_025214 Daucus carota HOM05D004048 ORTHO05D004859 3.2e-72 275.4 203 71.9
HPP92_005267 Vanilla planifolia HOM05D004048 ORTHO05D004859 4.2e-72 275.0 203 71.9
CsaV3_7G025860 Cucumis sativus L. HOM05D004048 ORTHO05D004859 5.5e-72 274.6 203 71.9
FvH4_7g15370 Fragaria vesca HOM05D004048 ORTHO05D004859 7.2e-72 274.2 203 72.4
FAN10G1698 Fragaria x ananassa HOM05D004048 ORTHO05D004859 7.2e-72 274.2 203 72.4
FAN10G3606 Fragaria x ananassa HOM05D004048 ORTHO05D004859 7.2e-72 274.2 203 72.4
CiPaw.02G034800 Carya illinoinensis HOM05D004048 ORTHO05D004859 9.4e-72 273.9 203 71.9
FAN06G1753 Fragaria x ananassa HOM05D004048 ORTHO05D004859 9.4e-72 273.9 203 72.4
RcHm_v2.0_Chr1g0357691 Rosa chinensis HOM05D004048 ORTHO05D004859 9.4e-72 273.9 203 72.9
Lsat_1_v5_gn_4_35260 Lactuca sativa HOM05D004048 ORTHO05D004859 1.2e-71 273.5 203 72.4
Ah.05g180160 Amaranthus hybridus HOM05D004048 ORTHO05D004859 1.6e-71 273.1 194 73.7
FAN03G0096 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.1e-71 272.7 203 71.9
Zm00001eb339000 Zea mays HOM05D004048 ORTHO05D004859 1.0e-70 270.4 194 73.7
Rhsim07G0205800 Rhododendron simsii HOM05D004048 ORTHO05D004859 5.1e-70 268.1 239 63.6
Duzib138G1147 Durio zibethinus HOM05D004048 ORTHO05D004859 6.7e-70 267.7 232 63.8
FAN06G0189 Fragaria x ananassa HOM05D004048 ORTHO05D004859 6.7e-70 267.7 220 66.8
MELO3C014805.2 Cucumis melo HOM05D004048 ORTHO05D004859 2.8e-68 262.3 203 68.5
RcHm_v2.0_Chr1g0357711 Rosa chinensis HOM05D004048 ORTHO05D004859 6.3e-68 261.2 202 69.3
ATR0751G137 Amborella trichopoda HOM05D004048 ORTHO05D004859 1.1e-67 260.4 194 67.5
SEGI_12250 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 1.4e-67 260.0 203 66.0
SEGI_21771 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 1.8e-67 259.6 194 68.0
Nitab4.5_0005222g0030 Nicotiana tabacum HOM05D004048 ORTHO05D004859 5.3e-67 258.1 203 70.0
Rhsim07G0206900 Rhododendron simsii HOM05D004048 ORTHO05D004859 9.1e-67 257.3 247 59.9
Mapoly0035s0043 Marchantia polymorpha HOM05D004048 ORTHO05D004859 1.2e-66 256.9 203 66.0
BcaC07g40671 Brassica carinata HOM05D004048 ORTHO05D004859 1.5e-66 256.5 185 72.4
AagrBONN_evm.TU.Sc2ySwM_117.2358 Anthoceros agrestis HOM05D004048 ORTHO05D004859 3.5e-66 255.4 203 64.5
AagrBONN_evm.TU.Sc2ySwM_117.1042 Anthoceros agrestis HOM05D004048 ORTHO05D004859 7.7e-66 254.2 203 64.0
SMO144G0210 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 5.0e-65 251.5 203 64.5
Os01g0225500 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 3.2e-64 248.8 203 64.5
Pp3c7_220 Physcomitrium patens HOM05D004048 ORTHO05D004859 5.5e-64 248.1 203 62.6
CBR_g45417 Chara braunii HOM05D004048 ORTHO05D004859 7.2e-64 247.7 203 62.1
MCO13G154 Micromonas commoda HOM05D004048 ORTHO05D004859 7.2e-64 247.7 203 62.6
CARHR107270 Cardamine hirsuta HOM05D004048 ORTHO05D004859 4.7e-63 245.0 177 74.0
Glyma.09G254700 Glycine max HOM05D004048 ORTHO05D004859 4.7e-63 245.0 203 65.5
MELO3C012767.2 Cucumis melo HOM05D004048 ORTHO05D004859 6.1e-63 244.6 247 57.5
GSVIVG01026967001 Vitis vinifera HOM05D004048 ORTHO05D004859 5.2e-62 241.5 175 73.7
FvH4_7g15371 Fragaria vesca HOM05D004048 ORTHO05D004859 6.7e-62 241.1 241 57.3
Cre12.g508550 Chlamydomonas reinhardtii HOM05D004048 ORTHO05D004859 4.4e-61 238.4 203 61.1
SMO119G0299 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 1.3e-60 236.9 203 61.1
SMO356G0035 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 4.8e-60 235.0 203 61.1
Medtr4g037305 Medicago truncatula HOM05D004048 ORTHO05D004859 8.2e-60 234.2 159 79.9
ClCG09G009090 Citrullus lanatus HOM05D004048 ORTHO05D004859 1.1e-59 233.8 170 72.9
Gohir.A08G133000 Gossypium hirsutum HOM05D004048 ORTHO05D004859 3.1e-59 232.3 175 71.4
FAN06G4041 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.7e-57 226.5 178 68.0
PRCOL_00005166 Prasinoderma coloniale HOM05D004048 ORTHO05D004859 6.5e-57 224.6 202 58.9
Cpa.g.sc11.73 Carica papaya HOM05D004048 ORTHO05D004859 4.2e-56 221.9 127 87.4
CDE11G0110 Ceratophyllum demersum HOM05D004048 ORTHO05D004859 4.7e-55 218.4 165 70.3
Nn6g32447 Nelumbo nucifera HOM05D004048 ORTHO05D004859 1.8e-54 216.5 127 85.0
ATR0751G082 Amborella trichopoda HOM05D004048 ORTHO05D004859 9.8e-53 210.7 127 81.9
Eucgr.B01984 Eucalyptus grandis HOM05D004048 ORTHO05D004859 5.9e-50 201.4 192 59.9
FAN10G3616 Fragaria x ananassa HOM05D004048 ORTHO05D004859 8.8e-46 187.6 237 50.6
FAN06G1997 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.4e-43 179.5 164 60.4
Eucgr.B01986 Eucalyptus grandis HOM05D004048 ORTHO05D004859 4.5e-42 175.3 179 58.7
FAN10G1509 Fragaria x ananassa HOM05D004048 ORTHO05D004859 7.2e-40 167.9 160 61.9
arahy.Tifrunner.gnm1.ann1.CIF5FW Arachis hypogaea HOM05D004048 ORTHO05D004859 1.2e-39 167.2 100 80.0
Cfa001640 Carpinus fangiana HOM05D004048 ORTHO05D004859 1.0e-38 164.1 196 49.0
MBI17_g16531_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 2.9e-36 156.0 103 74.8
Medtr4g037275 Medicago truncatula HOM05D004048 ORTHO05D004859 2.7e-34 149.4 76 94.7
BcaC07g42671 Brassica carinata HOM05D004048 ORTHO05D004859 5.0e-33 145.2 134 62.7
SHI16536 Sapria himalayana HOM05D004048 ORTHO05D004859 4.4e-29 132.1 76 82.9
AL4G45340 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 7.5e-29 131.3 114 64.9
CAN.G439.28 Capsicum annuum HOM05D004048 ORTHO05D004859 1.3e-28 130.6 76 81.6
MBI12_g43904_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 9.2e-27 124.4 88 73.9
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 1.7e-25 120.2 193 40.9
Haze_27487 Corylus avellana HOM05D004048 ORTHO05D004859 2.5e-24 116.3 179 38.5
TPR.G28294 Trifolium pratense HOM05D004048 ORTHO05D004859 1.6e-23 113.6 89 75.3
Actinidia20163 Actinidia chinensis HOM05D004048 ORTHO05D004859 8.9e-22 107.8 150 50.0
Ca_03489_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 5.4e-19 98.6 108 56.5
SEGI_25526 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 2.3e-14 83.2 87 50.6
PGSC0003DMG400018716 Solanum tuberosum HOM05D004048 ORTHO05D004859 6.4e-12 75.1 51 72.5
Os01g0225400 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 1.2e-10 70.9 46 76.1
HanXRQChr15g0474641 Helianthus annuus HOM05D004048 ORTHO05D004859 1.5e-08 63.9 43 74.4
SGA_v2.0_scaffold4G02383 Striga asiatica HOM05D004048 ORTHO05D051375 3.3e-08 62.8 36 86.1


User provided reference genes

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