Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr4g014710 Medicago truncatula HOM05D005750 ORTHO05D007126 2.4e-187 658.7 332 100.0
Psat7g247000 Pisum sativum HOM05D005750 ORTHO05D007126 3.5e-162 575.1 331 88.5
TPR.G5219 Trifolium pratense HOM05D005750 ORTHO05D007126 7.1e-155 550.8 333 86.8
Lj3g0021719 Lotus japonicus HOM05D005750 ORTHO05D007126 2.4e-131 472.6 353 75.6
Phvul.010G008000 Phaseolus vulgaris HOM05D005750 ORTHO05D007126 2.4e-126 456.1 282 85.8
Glyma.01G110900 Glycine max HOM05D005750 ORTHO05D007126 2.2e-124 449.5 347 74.1
Lalb_Chr07g0193351 Lupinus albus HOM05D005750 ORTHO05D007126 7.1e-123 444.5 319 78.1
VMungo0331G1407 Vigna mungo HOM05D005750 ORTHO05D007126 1.2e-122 443.7 348 73.9
arahy.Tifrunner.gnm1.ann1.CU0EG8 Arachis hypogaea HOM05D005750 ORTHO05D007126 1.8e-121 439.9 346 71.4
Glyma.03G076500 Glycine max HOM05D005750 ORTHO05D007126 1.1e-120 437.2 298 80.9
arahy.Tifrunner.gnm1.ann1.2Q187C Arachis hypogaea HOM05D005750 ORTHO05D007126 1.1e-118 430.6 349 70.8
Gohir.A01G224900 Gossypium hirsutum HOM05D005750 ORTHO05D007126 3.5e-114 415.6 275 77.8
Prupe.6G269800 Prunus persica HOM05D005750 ORTHO05D007126 3.5e-114 415.6 257 83.3
ClCG10G021760 Citrullus lanatus HOM05D005750 ORTHO05D007126 1.0e-113 414.1 270 79.6
Gohir.D01G214500 Gossypium hirsutum HOM05D005750 ORTHO05D007126 1.0e-113 414.1 271 78.6
MD04G1146200 Malus domestica HOM05D005750 ORTHO05D007126 1.8e-113 413.3 273 78.8
RcHm_v2.0_Chr3g0463971 Rosa chinensis HOM05D005750 ORTHO05D007126 1.8e-113 413.3 265 80.0
CiPaw.09G205200 Carya illinoinensis HOM05D005750 ORTHO05D007126 3.0e-113 412.5 276 78.6
Dinv35517 Davidia involucrata HOM05D005750 ORTHO05D007126 3.0e-113 412.5 276 77.5
FvH4_6g12170 Fragaria vesca HOM05D005750 ORTHO05D007126 3.0e-113 412.5 280 76.4
FAN09G4178 Fragaria x ananassa HOM05D005750 ORTHO05D007126 3.0e-113 412.5 280 76.4
FAN02G3889 Fragaria x ananassa HOM05D005750 ORTHO05D007126 3.9e-113 412.1 281 76.2
Duzib128G1738 Durio zibethinus HOM05D005750 ORTHO05D007126 5.1e-113 411.8 275 78.9
Gorai.002G260600 Gossypium raimondii HOM05D005750 ORTHO05D007126 5.1e-113 411.8 271 78.2
FAN14G0046 Fragaria x ananassa HOM05D005750 ORTHO05D007126 8.7e-113 411.0 280 76.1
FAN14G1750 Fragaria x ananassa HOM05D005750 ORTHO05D007126 8.7e-113 411.0 280 76.1
CsaV3_3G034210 Cucumis sativus L. HOM05D005750 ORTHO05D007126 1.9e-112 409.8 278 77.3
Sed0027096 Sechium edule HOM05D005750 ORTHO05D007126 3.3e-112 409.1 273 78.8
Ciclev10012396m.g Citrus clementina HOM05D005750 ORTHO05D007126 4.3e-112 408.7 284 75.7
MELO3C009196.2 Cucumis melo HOM05D005750 ORTHO05D007126 4.3e-112 408.7 278 77.0
Duzib093G0788 Durio zibethinus HOM05D005750 ORTHO05D007126 6.3e-111 404.8 274 76.6
MD12G1159400 Malus domestica HOM05D005750 ORTHO05D007126 1.1e-110 404.1 269 78.8
Atru.chr8.2137 Acer truncatum HOM05D005750 ORTHO05D007126 1.8e-110 403.3 261 79.3
CANSAT35G0049 Cannabis sativa HOM05D005750 ORTHO05D007126 2.0e-109 399.8 280 73.9
Actinidia13787 Actinidia chinensis HOM05D005750 ORTHO05D007126 1.0e-108 397.5 253 79.8
QL07p036167 Quercus lobata HOM05D005750 ORTHO05D007126 1.0e-108 397.5 272 76.8
vmacro20231 Vaccinium macrocarpon HOM05D005750 ORTHO05D007126 6.5e-108 394.8 256 78.5
DCAR_028833 Daucus carota HOM05D005750 ORTHO05D007126 1.4e-107 393.7 271 76.8
Lj2A78G34 Lonicera japonica HOM05D005750 ORTHO05D007126 1.4e-107 393.7 276 73.9
Nitab4.5_0000119g0240 Nicotiana tabacum HOM05D005750 ORTHO05D007126 2.5e-107 392.9 276 74.3
TWI74G1070 Tripterygium wilfordii HOM05D005750 ORTHO05D007126 2.5e-107 392.9 274 76.6
Cpa.g.sc56.104 Carica papaya HOM05D005750 ORTHO05D007126 4.2e-107 392.1 280 75.4
Dinv37089 Davidia involucrata HOM05D005750 ORTHO05D007126 5.5e-107 391.7 277 74.4
Aqoxy1G00732 Aquilegia oxysepala HOM05D005750 ORTHO05D007126 1.2e-106 390.6 266 75.9
COL.COLO4_14617 Corchorus olitorius HOM05D005750 ORTHO05D007126 1.6e-106 390.2 301 68.8
Thecc.05G023200 Theobroma cacao HOM05D005750 ORTHO05D007126 2.1e-106 389.8 273 75.8
Manes.09G101500 Manihot esculenta HOM05D005750 ORTHO05D007126 3.6e-106 389.0 271 74.9
TWI53G0977 Tripterygium wilfordii HOM05D005750 ORTHO05D007126 3.6e-106 389.0 274 77.0
CSS0046643 Camellia sinensis var. sinensis HOM05D005750 ORTHO05D007126 7.9e-106 387.9 259 77.6
GSVIVG01034019001 Vitis vinifera HOM05D005750 ORTHO05D007126 1.3e-105 387.1 276 73.6
Ah.11g045300 Amaranthus hybridus HOM05D005750 ORTHO05D007126 3.9e-105 385.6 261 75.9
Potri.016G110300 Populus trichocarpa HOM05D005750 ORTHO05D007126 6.7e-105 384.8 274 74.5
MBI14_g32934_MAGBIO Magnolia biondii HOM05D005750 ORTHO05D007126 1.5e-104 383.6 259 75.7
Peaxi162Scf00014g00091 Petunia axillaris HOM05D005750 ORTHO05D007126 2.5e-104 382.9 273 72.9
AUR62042943 Chenopodium quinoa HOM05D005750 ORTHO05D007126 3.3e-104 382.5 267 76.8
TAR636G2178 Trochodendron aralioides HOM05D005750 ORTHO05D007126 2.8e-103 379.4 276 72.5
Eucgr.B02764 Eucalyptus grandis HOM05D005750 ORTHO05D007126 8.2e-103 377.9 263 75.7
MSTRG.26795 Avicennia marina HOM05D005750 ORTHO05D007126 1.1e-102 377.5 269 72.9
EL10Ac5g11550 Beta vulgaris HOM05D005750 ORTHO05D007126 2.4e-102 376.3 273 73.3
Hund15288 Selenicereus undatus HOM05D005750 ORTHO05D007126 4.1e-102 375.6 268 73.9
Aa31sc171G20 Aethionema arabicum HOM05D005750 ORTHO05D007126 5.3e-102 375.2 278 69.8
Sopen10g036170 Solanum pennellii HOM05D005750 ORTHO05D007126 6.9e-102 374.8 276 70.7
PGR031G0365 Punica granatum HOM05D005750 ORTHO05D007126 9.1e-102 374.4 266 72.9
TAR623G1708 Trochodendron aralioides HOM05D005750 ORTHO05D007126 9.1e-102 374.4 279 70.3
Cc06_g01740 Coffea canephora HOM05D005750 ORTHO05D007126 1.2e-101 374.0 270 71.1
CAN.G351.8 Capsicum annuum HOM05D005750 ORTHO05D007126 1.5e-101 373.6 277 71.5
Haze_20940 Corylus avellana HOM05D005750 ORTHO05D007126 1.5e-101 373.6 254 76.0
Carub.0005s2072 Capsella rubella HOM05D005750 ORTHO05D007126 2.2e-100 369.8 281 69.8
Thhalv10010608m.g Eutrema salsugineum HOM05D005750 ORTHO05D007126 8.5e-100 367.9 282 69.5
Sc01g0006740 Simmondsia chinensis HOM05D005750 ORTHO05D007126 1.1e-99 367.5 256 73.8
Sed0026182 Sechium edule HOM05D005750 ORTHO05D007126 1.9e-99 366.7 292 67.5
AT3G54130 Arabidopsis thaliana HOM05D005750 ORTHO05D007126 3.2e-99 365.9 280 69.3
Sp5g08260 Schrenkiella parvula HOM05D005750 ORTHO05D007126 3.2e-99 365.9 282 68.8
AL5G35150 Arabidopsis lyrata HOM05D005750 ORTHO05D007126 7.2e-99 364.8 282 68.1
PSO384G4196 Papaver somniferum HOM05D005750 ORTHO05D007126 7.2e-99 364.8 257 73.2
THA.LOC104823389 Tarenaya hassleriana HOM05D005750 ORTHO05D007126 7.2e-99 364.8 279 68.8
A09p47130 Brassica napus HOM05D005750 ORTHO05D007126 2.7e-98 362.8 285 67.7
C04p38380 Brassica napus HOM05D005750 ORTHO05D007126 2.7e-98 362.8 280 67.9
BolC4t25415H Brassica oleracea HOM05D005750 ORTHO05D007126 2.7e-98 362.8 280 67.9
BraA09t40175Z Brassica rapa HOM05D005750 ORTHO05D007126 2.7e-98 362.8 285 67.7
A04p05670 Brassica napus HOM05D005750 ORTHO05D007126 6.1e-98 361.7 283 68.2
unitig_46.g18409 Utricularia gibba HOM05D005750 ORTHO05D007126 7.9e-98 361.3 254 74.4
Rhsim05G0204700 Rhododendron simsii HOM05D005750 ORTHO05D007126 1.0e-97 360.9 282 68.1
CARHR164010 Cardamine hirsuta HOM05D005750 ORTHO05D007126 1.4e-97 360.5 284 68.0
BcaC02g09095 Brassica carinata HOM05D005750 ORTHO05D007126 1.8e-97 360.1 280 67.1
C08p29390 Brassica napus HOM05D005750 ORTHO05D007126 1.8e-97 360.1 285 67.4
BolC8t50540H Brassica oleracea HOM05D005750 ORTHO05D007126 1.8e-97 360.1 285 67.4
PSO339G6575 Papaver somniferum HOM05D005750 ORTHO05D007126 2.3e-97 359.8 257 72.8
Lsat_1_v5_gn_8_99481 Lactuca sativa HOM05D005750 ORTHO05D007126 5.1e-97 358.6 208 83.7
Migut.J00232 Erythranthe guttata HOM05D005750 ORTHO05D007126 6.7e-97 358.2 246 74.8
BraA04t16263Z Brassica rapa HOM05D005750 ORTHO05D007126 1.1e-96 357.5 283 67.5
BcaB02g08472 Brassica carinata HOM05D005750 ORTHO05D007126 1.5e-96 357.1 281 66.9
Oeu004613.2 Olea europaea HOM05D005750 ORTHO05D007126 2.0e-96 356.7 309 63.1
CDE02G4717 Ceratophyllum demersum HOM05D005750 ORTHO05D007126 2.6e-96 356.3 260 70.0
Sabra06G0073600 Salix brachista HOM05D005750 ORTHO05D007126 2.6e-96 356.3 315 62.9
Sabra16G0106800 Salix brachista HOM05D005750 ORTHO05D007126 1.7e-95 353.6 277 69.3
HanXRQChr16g0510541 Helianthus annuus HOM05D005750 ORTHO05D007126 6.3e-95 351.7 272 69.1
Ca_23809_v3 Cicer arietinum L. HOM05D005750 ORTHO05D007126 5.9e-93 345.1 271 73.8
Hma1.2p1_0763F.1_g214560 Hydrangea macrophylla HOM05D005750 ORTHO05D007126 5.9e-93 345.1 279 66.7
Zm00001eb367490 Zea mays HOM05D005750 ORTHO05D007126 1.1e-91 340.9 329 58.1
Potri.006G095700 Populus trichocarpa HOM05D005750 ORTHO05D007126 1.4e-91 340.5 227 76.2
Os01g0851400 Oryza sativa ssp. japonica HOM05D005750 ORTHO05D007126 3.9e-89 332.4 334 57.2
SGA_v2.0_scaffold240G44116 Striga asiatica HOM05D005750 ORTHO05D007126 4.4e-88 328.9 256 68.0
BcaB01g00216 Brassica carinata HOM05D005750 ORTHO05D007126 1.7e-87 327.0 206 78.2
Zm00001eb147810 Zea mays HOM05D005750 ORTHO05D007126 1.8e-86 323.6 337 55.8
Gohir.D04G128250 Gossypium hirsutum HOM05D005750 ORTHO05D007126 1.3e-84 317.4 254 66.9
TPR.G5190 Trifolium pratense HOM05D005750 ORTHO05D007126 1.1e-83 314.3 363 51.8
Actinidia29137 Actinidia chinensis HOM05D005750 ORTHO05D007126 1.2e-82 310.8 226 73.0
SEGI_00199 Sequoiadendron giganteum HOM05D005750 ORTHO05D007126 2.7e-82 309.7 256 62.1
Gorai.012G111300 Gossypium raimondii HOM05D005750 ORTHO05D007126 5.7e-80 302.0 257 64.6
CiPaw.10G154000 Carya illinoinensis HOM05D005750 ORTHO05D007126 1.3e-79 300.8 274 62.0
SGA_v2.0_scaffold85G26769 Striga asiatica HOM05D005750 ORTHO05D007126 1.8e-73 280.4 194 71.1
Nn2g13588 Nelumbo nucifera HOM05D005750 ORTHO05D007126 5.2e-73 278.9 178 79.8
ECA236G1744 Erigeron canadensis HOM05D005750 ORTHO05D007126 7.7e-69 265.0 185 73.0
PGSC0003DMG400019130 Solanum tuberosum HOM05D005750 ORTHO05D007126 7.7e-69 265.0 189 71.4
AUR62025787 Chenopodium quinoa HOM05D005750 ORTHO05D007126 2.9e-68 263.1 184 75.0
HPP92_018186 Vanilla planifolia HOM05D005750 ORTHO05D007126 5.5e-67 258.8 254 57.1
Solyc10g086770.3 Solanum lycopersicum HOM05D005750 ORTHO05D007126 6.8e-65 251.9 189 68.3
Pp3c7_8520 Physcomitrium patens HOM05D005750 ORTHO05D007126 1.5e-59 234.2 260 48.8
CBR_g865 Chara braunii HOM05D005750 ORTHO05D007126 7.3e-59 231.9 270 47.8
AagrBONN_evm.TU.Sc2ySwM_344.3267 Anthoceros agrestis HOM05D005750 ORTHO05D007126 3.6e-58 229.6 209 56.9
Nitab4.5_0006439g0020 Nicotiana tabacum HOM05D005750 ORTHO05D007126 3.9e-52 209.5 271 49.8
SMO203G0145 Selaginella moellendorffii HOM05D005750 ORTHO05D007126 5.4e-46 189.1 170 55.9
Cre11.g475450 Chlamydomonas reinhardtii HOM05D005750 ORTHO05D007126 6.0e-45 185.7 208 46.2
TAR636G1840 Trochodendron aralioides HOM05D005750 ORTHO05D007126 7.1e-38 162.2 191 51.8
MCO10G202 Micromonas commoda HOM05D005750 ORTHO05D007126 3.0e-36 156.8 220 38.6
Ca_23812_v3 Cicer arietinum L. HOM05D005750 ORTHO05D007126 1.9e-35 154.1 79 94.9
PRCOL_00002333 Prasinoderma coloniale HOM05D005750 ORTHO05D007126 2.3e-28 130.6 281 32.7
TAR402G0002 Trochodendron aralioides HOM05D005750 ORTHO05D007126 1.1e-27 128.3 87 78.2
Haze_26299 Corylus avellana HOM05D005750 ORTHO05D007126 5.8e-24 115.9 168 36.3
Nn2g11345 Nelumbo nucifera HOM05D005750 ORTHO05D007126 9.3e-22 108.6 54 96.3
ATR0618G451 Amborella trichopoda HOM05D005750 ORTHO05D007126 6.0e-21 105.9 55 90.9
A04p05660 Brassica napus HOM05D005750 ORTHO05D007126 1.6e-18 97.8 52 88.5
Glyma.14G192300 Glycine max HOM05D005325 ORTHO05D008457 1.3e-07 61.6 181 30.4
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 1.7e-07 61.2 149 30.9
Os03g0265200 Oryza sativa ssp. japonica HOM05D005325 ORTHO05D008457 1.7e-07 61.2 173 28.3
arahy.Tifrunner.gnm1.ann1.VY3BKH Arachis hypogaea HOM05D005325 ORTHO05D008457 2.9e-07 60.5 179 28.5
Cpa.g.sc112.50 Carica papaya HOM05D005325 ORTHO05D008457 4.9e-07 59.7 183 29.5
Nitab4.5_0000408g0140 Nicotiana tabacum HOM05D005325 ORTHO05D008457 8.4e-07 58.9 179 27.4
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 1.4e-06 58.2 186 27.4
Prupe.6G060500 Prunus persica HOM05D005325 ORTHO05D008457 1.4e-06 58.2 178 28.7
Glyma.07G142100 Glycine max HOM05D005750 ORTHO05D007126 1.9e-06 57.8 41 68.3
Pp3c13_16720 Physcomitrium patens HOM05D005325 ORTHO05D008457 2.5e-06 57.4 163 29.4
arahy.Tifrunner.gnm1.ann1.CQ7B2G Arachis hypogaea HOM05D005325 ORTHO05D008457 3.2e-06 57.0 184 28.8
Aa31LG5G6860 Aethionema arabicum HOM05D005325 ORTHO05D008457 4.2e-06 56.6 171 26.9
AT2G29640 Arabidopsis thaliana HOM05D005325 ORTHO05D008457 4.2e-06 56.6 153 26.1
Glyma.02G225500 Glycine max HOM05D005325 ORTHO05D008457 4.2e-06 56.6 181 29.3
GSVIVG01024786001 Vitis vinifera HOM05D005325 ORTHO05D008457 4.2e-06 56.6 184 28.8
Zm00001eb011730 Zea mays HOM05D005325 ORTHO05D008457 4.2e-06 56.6 181 26.0
CSS0007520 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 5.5e-06 56.2 175 27.4
CSS0011737 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 5.5e-06 56.2 175 27.4
PGR119G0476 Punica granatum HOM05D005325 ORTHO05D008457 5.5e-06 56.2 187 27.8
COL.COLO4_19112 Corchorus olitorius HOM05D005325 ORTHO05D008457 7.1e-06 55.8 180 25.6
VMungo0647G2564 Vigna mungo HOM05D005325 ORTHO05D008457 7.1e-06 55.8 177 27.1
Ciclev10029368m.g Citrus clementina HOM05D005325 ORTHO05D008457 9.3e-06 55.5 187 27.3


User provided reference genes

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