Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr3g092020 Medicago truncatula HOM05D008044 ORTHO05D010106 1.8e-90 335.9 163 100.0
TPR.G33642 Trifolium pratense HOM05D008044 ORTHO05D010106 2.8e-80 302.0 166 89.2
Psat5g074880 Pisum sativum HOM05D008044 ORTHO05D010106 3.8e-77 291.6 163 88.3
Glyma.04G232600 Glycine max HOM05D008044 ORTHO05D010106 2.2e-72 275.8 166 78.3
Glyma.06G132400 Glycine max HOM05D008044 ORTHO05D010106 2.2e-69 265.8 166 75.9
arahy.Tifrunner.gnm1.ann1.QU8WMY Arachis hypogaea HOM05D008044 ORTHO05D010106 2.9e-69 265.4 166 75.3
arahy.Tifrunner.gnm1.ann1.4AVA7A Arachis hypogaea HOM05D008044 ORTHO05D010106 1.4e-68 263.1 166 74.7
Lj1g0025539 Lotus japonicus HOM05D008044 ORTHO05D010106 2.5e-68 262.3 167 76.6
Phvul.009G048200 Phaseolus vulgaris HOM05D008044 ORTHO05D010106 7.2e-68 260.8 160 75.0
Lalb_Chr23g0271711 Lupinus albus HOM05D008044 ORTHO05D010106 7.9e-67 257.3 163 76.1
CiPaw.06G043900 Carya illinoinensis HOM05D008044 ORTHO05D010106 1.8e-66 256.1 163 73.0
QL09p007646 Quercus lobata HOM05D008044 ORTHO05D010106 6.9e-63 244.2 194 62.9
Dinv35361 Davidia involucrata HOM05D008044 ORTHO05D010106 1.0e-61 240.4 164 68.9
CsaV3_3G019660 Cucumis sativus L. HOM05D008044 ORTHO05D010106 1.7e-61 239.6 167 68.9
Manes.01G037300 Manihot esculenta HOM05D008044 ORTHO05D010106 5.0e-61 238.0 162 66.7
Sed0010771 Sechium edule HOM05D008044 ORTHO05D010106 8.5e-61 237.3 167 68.9
MELO3C019381.2 Cucumis melo HOM05D008044 ORTHO05D010106 2.5e-60 235.7 167 68.3
TAR636G0016 Trochodendron aralioides HOM05D008044 ORTHO05D010106 5.5e-60 234.6 163 69.9
GSVIVG01038604001 Vitis vinifera HOM05D008044 ORTHO05D010106 7.2e-60 234.2 164 68.9
Dinv29244 Davidia involucrata HOM05D008044 ORTHO05D010106 4.7e-59 231.5 163 65.0
Atru.chr12.2313 Acer truncatum HOM05D008044 ORTHO05D010106 7.9e-59 230.7 166 66.3
Thecc.03G204500 Theobroma cacao HOM05D008044 ORTHO05D010106 1.0e-58 230.3 164 65.9
CSS0007407 Camellia sinensis var. sinensis HOM05D008044 ORTHO05D010106 2.3e-58 229.2 164 67.1
Sabra15G0006200 Salix brachista HOM05D002361 ORTHO05D002843 3.0e-58 228.8 161 65.2
Ca_16735_v3 Cicer arietinum L. HOM05D008044 ORTHO05D010106 3.9e-58 228.4 133 83.5
Cfa016194 Carpinus fangiana HOM05D008044 ORTHO05D010106 9.7e-57 223.8 163 68.1
DCAR_020347 Daucus carota HOM05D008044 ORTHO05D010106 1.3e-56 223.4 163 66.9
PSO063G1947 Papaver somniferum HOM05D008044 ORTHO05D010106 2.2e-56 222.6 163 63.8
CiPaw.05G200900 Carya illinoinensis HOM05D008044 ORTHO05D010106 4.8e-56 221.5 163 63.8
Gohir.A03G051500 Gossypium hirsutum HOM05D008044 ORTHO05D010106 3.1e-55 218.8 165 64.8
Aqoxy5G02418 Aquilegia oxysepala HOM05D008044 ORTHO05D010106 4.1e-55 218.4 163 66.3
AUR62035573 Chenopodium quinoa HOM05D008044 ORTHO05D010106 4.1e-55 218.4 163 62.6
Gorai.003G122500 Gossypium raimondii HOM05D008044 ORTHO05D010106 4.1e-55 218.4 165 64.2
Gohir.D03G116200 Gossypium hirsutum HOM05D008044 ORTHO05D010106 5.3e-55 218.0 165 64.2
Eucgr.A01433 Eucalyptus grandis HOM05D008044 ORTHO05D010106 9.1e-55 217.2 164 65.9
Duzib205G1586 Durio zibethinus HOM05D008044 ORTHO05D010106 1.5e-54 216.5 165 64.8
MSTRG.8632 Avicennia marina HOM05D008044 ORTHO05D010106 5.9e-54 214.5 163 62.6
Ciclev10022664m.g Citrus clementina HOM05D008044 ORTHO05D010106 5.9e-54 214.5 163 63.2
Lsat_1_v5_gn_2_135221 Lactuca sativa HOM05D008044 ORTHO05D010106 3.2e-52 208.8 164 60.4
PGR042G2636 Punica granatum HOM05D008044 ORTHO05D010106 4.2e-52 208.4 166 62.0
AUR62006056 Chenopodium quinoa HOM05D008044 ORTHO05D010106 7.2e-52 207.6 163 59.5
CANSAT21G1192 Cannabis sativa HOM05D008044 ORTHO05D010106 1.2e-51 206.8 163 62.0
SGA_v2.0_scaffold44G16829 Striga asiatica HOM05D008044 ORTHO05D010106 3.6e-51 205.3 163 62.6
Cc02_g01150 Coffea canephora HOM05D008044 ORTHO05D010106 4.7e-51 204.9 165 63.0
ClCG05G009120 Citrullus lanatus HOM05D008044 ORTHO05D010106 6.1e-51 204.5 139 69.1
PGSC0003DMG400018537 Solanum tuberosum HOM05D008044 ORTHO05D010106 6.1e-51 204.5 163 60.7
Sc25g0000980 Simmondsia chinensis HOM05D008044 ORTHO05D010106 2.3e-50 202.6 174 58.0
Migut.F00176 Erythranthe guttata HOM05D008044 ORTHO05D010106 3.0e-50 202.2 163 58.3
Solyc03g082670.3 Solanum lycopersicum HOM05D008044 ORTHO05D010106 6.7e-50 201.1 163 60.7
CAN.G481.61 Capsicum annuum HOM05D008044 ORTHO05D010106 1.1e-49 200.3 163 59.5
Haze_00261 Corylus avellana HOM05D008044 ORTHO05D010106 2.6e-49 199.1 135 71.9
HanXRQChr04g0100441 Helianthus annuus HOM05D008044 ORTHO05D010106 1.7e-48 196.4 162 58.0
Nitab4.5_0008197g0010 Nicotiana tabacum HOM05D008044 ORTHO05D010106 1.7e-48 196.4 163 58.9
Hund11636 Selenicereus undatus HOM05D008044 ORTHO05D010106 2.8e-48 195.7 167 56.3
Actinidia08675 Actinidia chinensis HOM05D008044 ORTHO05D010106 8.2e-48 194.1 132 68.2
MBI04_g11918_MAGBIO Magnolia biondii HOM05D008044 ORTHO05D010106 1.1e-47 193.7 187 54.0
SEGI_00721 Sequoiadendron giganteum HOM05D008044 ORTHO05D010106 5.3e-47 191.4 177 54.2
Oeu037043.1 Olea europaea HOM05D001626 ORTHO05D010106 1.6e-46 189.9 158 60.1
ATR0620G028 Amborella trichopoda HOM05D008044 ORTHO05D010106 2.0e-46 189.5 161 59.6
EL10Ac3g05235 Beta vulgaris HOM05D008044 ORTHO05D010106 8.5e-45 184.1 143 60.1
PSO782G0454 Papaver somniferum HOM05D008044 ORTHO05D010106 8.5e-45 184.1 132 65.9
Zm00001eb187590 Zea mays HOM05D008044 ORTHO05D010106 4.2e-44 181.8 158 55.7
Hma1.2p1_0512F.1_g169310 Hydrangea macrophylla HOM05D008044 ORTHO05D010106 1.0e-42 177.2 130 66.9
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 6.8e-42 174.5 138 64.5
SalBow4G0010 Salvia bowleyana HOM05D008044 ORTHO05D010106 5.7e-41 171.4 169 53.3
SGA_v2.0_scaffold18G08440 Striga asiatica HOM05D008044 ORTHO05D010106 8.3e-40 167.5 165 48.5
Nitab4.5_0010367g0020 Nicotiana tabacum HOM05D008044 ORTHO05D010106 1.4e-39 166.8 138 59.4
Sopen03g022430 Solanum pennellii HOM05D008044 ORTHO05D010106 3.5e-38 162.2 131 61.8
Ah.07g205140 Amaranthus hybridus HOM05D008044 ORTHO05D010106 8.5e-37 157.5 163 50.9
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 2.1e-35 152.9 135 60.0
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 8.8e-34 147.5 80 78.8
Peaxi162Scf00740g00427 Petunia axillaris HOM05D008044 ORTHO05D010106 1.2e-30 137.1 163 46.6
Zm00001eb421680 Zea mays HOM05D001260 ORTHO05D010106 2.7e-30 136.0 94 62.8
CDE02G3408 Ceratophyllum demersum HOM05D008044 ORTHO05D010106 1.2e-27 127.1 111 51.4
Os02g0686500 Oryza sativa ssp. japonica HOM05D008044 ORTHO05D010106 4.9e-24 115.2 80 62.5
Mapoly0007s0051 Marchantia polymorpha HOM05D008044 ORTHO05D010106 2.4e-23 112.8 161 37.3
Lsat_1_v5_gn_9_14140 Lactuca sativa HOM05D008044 ORTHO05D010106 1.2e-22 110.5 125 48.8
AagrBONN_evm.TU.Sc2ySwM_117.1515 Anthoceros agrestis HOM05D008044 ORTHO05D010106 4.5e-22 108.6 194 34.5
Nn1g00365 Nelumbo nucifera HOM05D008044 ORTHO05D010106 7.3e-20 101.3 83 62.7
ECA238G1983 Erigeron canadensis HOM05D008044 ORTHO05D010106 1.9e-15 86.7 83 51.8
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 3.5e-06 55.8 139 29.5


User provided reference genes

Program Settings