Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr3g058430 Medicago truncatula HOM05D004814 ORTHO05D005778 3.8e-97 358.2 189 100.0
Psat5g170120 Pisum sativum HOM05D004814 ORTHO05D005778 2.9e-73 278.9 202 75.7
Ca_20138_v3 Cicer arietinum L. HOM05D004814 ORTHO05D005778 6.6e-73 277.7 203 77.3
TPR.G30737 Trifolium pratense HOM05D004814 ORTHO05D005778 2.3e-70 269.2 202 76.2
Phvul.006G055300 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 1.3e-68 263.5 210 71.9
Phvul.001G030600 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 2.2e-68 262.7 210 71.4
Glyma.08G327500 Glycine max HOM05D004814 ORTHO05D005778 4.9e-68 261.5 212 72.6
arahy.Tifrunner.gnm1.ann1.X98J9H Arachis hypogaea HOM05D004814 ORTHO05D005778 6.6e-65 251.1 207 68.6
arahy.Tifrunner.gnm1.ann1.0CA1AM Arachis hypogaea HOM05D004814 ORTHO05D005778 8.6e-65 250.8 208 68.3
Glyma.18G079900 Glycine max HOM05D004814 ORTHO05D005778 8.6e-65 250.8 211 71.1
arahy.Tifrunner.gnm1.ann1.CWZH2K Arachis hypogaea HOM05D004814 ORTHO05D005778 5.6e-64 248.1 208 67.8
arahy.Tifrunner.gnm1.ann1.RG8M6K Arachis hypogaea HOM05D004814 ORTHO05D005778 7.3e-64 247.7 208 68.3
QL08p004842 Quercus lobata HOM05D004814 ORTHO05D005778 7.3e-64 247.7 208 68.8
Haze_09803 Corylus avellana HOM05D004814 ORTHO05D005778 3.1e-62 242.3 189 73.0
MD03G1187000 Malus domestica HOM05D004814 ORTHO05D005778 3.1e-62 242.3 201 68.2
FvH4_3g29500 Fragaria vesca HOM05D004814 ORTHO05D005778 1.5e-61 240.0 199 70.4
FAN11G3417 Fragaria x ananassa HOM05D004814 ORTHO05D005778 1.5e-61 240.0 199 70.4
CANSAT11G0174 Cannabis sativa HOM05D004814 ORTHO05D005778 2.0e-61 239.6 202 67.8
Dinv10318 Davidia involucrata HOM05D004814 ORTHO05D005778 3.4e-61 238.8 202 67.8
RcHm_v2.0_Chr5g0054381 Rosa chinensis HOM05D004814 ORTHO05D005778 3.4e-61 238.8 200 70.5
Cfa020215 Carpinus fangiana HOM05D004814 ORTHO05D005778 5.8e-61 238.0 208 66.3
FAN21G1289 Fragaria x ananassa HOM05D004814 ORTHO05D005778 7.5e-61 237.7 199 69.8
CiPaw.12G136400 Carya illinoinensis HOM05D004814 ORTHO05D005778 1.3e-60 236.9 208 65.4
FAN25G3790 Fragaria x ananassa HOM05D004814 ORTHO05D005778 2.9e-60 235.7 199 68.3
FAN16G2593 Fragaria x ananassa HOM05D004814 ORTHO05D005778 8.3e-60 234.2 199 69.3
ClCG09G021040 Citrullus lanatus HOM05D004814 ORTHO05D005778 3.2e-59 232.3 211 65.9
Dinv40842 Davidia involucrata HOM05D004814 ORTHO05D005778 1.6e-58 229.9 202 66.3
MELO3C024899.2 Cucumis melo HOM05D004814 ORTHO05D005778 2.1e-58 229.6 211 64.9
CsaV3_7G018640 Cucumis sativus L. HOM05D004814 ORTHO05D005778 2.7e-58 229.2 211 64.5
Hma1.2p1_0889F.1_g232870 Hydrangea macrophylla HOM05D004814 ORTHO05D005778 1.7e-57 226.5 213 63.8
Potri.011G092800 Populus trichocarpa HOM05D004814 ORTHO05D005778 2.3e-57 226.1 209 63.2
TWI39G1010 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 3.0e-57 225.7 207 65.7
Prupe.4G239600 Prunus persica HOM05D004814 ORTHO05D005778 3.9e-57 225.3 202 65.3
TWI38G0785 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 5.1e-57 224.9 207 64.3
DCAR_013223 Daucus carota HOM05D004814 ORTHO05D005778 1.9e-56 223.0 191 66.0
Sabra11G0087000 Salix brachista HOM05D004814 ORTHO05D005778 1.6e-55 219.9 209 60.8
GSVIVG01014640001 Vitis vinifera HOM05D004814 ORTHO05D005778 1.6e-55 219.9 203 62.6
Actinidia30418 Actinidia chinensis HOM05D004814 ORTHO05D005778 2.1e-55 219.5 202 67.8
Gohir.A01G090000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 2.8e-55 219.2 195 66.7
Gohir.D01G075300 Gossypium hirsutum HOM05D004814 ORTHO05D005778 3.6e-55 218.8 195 66.2
Gorai.002G098500 Gossypium raimondii HOM05D004814 ORTHO05D005778 3.6e-55 218.8 195 66.2
Gorai.007G310400 Gossypium raimondii HOM05D004814 ORTHO05D005778 4.7e-55 218.4 193 66.3
Sed0017349 Sechium edule HOM05D004814 ORTHO05D005778 4.7e-55 218.4 203 64.5
MD11G1202000 Malus domestica HOM05D004814 ORTHO05D005778 6.2e-55 218.0 202 63.9
Gohir.D11G287000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 8.1e-55 217.6 193 66.3
Gohir.A11G276900 Gossypium hirsutum HOM05D004814 ORTHO05D005778 1.1e-54 217.2 193 65.8
Manes.15G061900 Manihot esculenta HOM05D004814 ORTHO05D005778 1.8e-54 216.5 214 59.8
Ciclev10009615m.g Citrus clementina HOM05D004814 ORTHO05D005778 2.3e-54 216.1 195 65.1
Lalb_Chr05g0211691 Lupinus albus HOM05D004814 ORTHO05D005778 2.3e-54 216.1 215 61.9
Manes.03G139872 Manihot esculenta HOM05D004814 ORTHO05D005778 4.0e-54 215.3 214 58.9
BcaNung05270 Brassica carinata HOM05D004814 ORTHO05D005778 5.2e-54 214.9 197 64.5
Sopen10g001990 Solanum pennellii HOM05D004814 ORTHO05D005778 5.2e-54 214.9 190 65.3
A03p38040 Brassica napus HOM05D004814 ORTHO05D005778 6.8e-54 214.5 193 64.8
Lsat_1_v5_gn_9_90400 Lactuca sativa HOM05D004814 ORTHO05D005778 6.8e-54 214.5 187 65.2
Thecc.07G016800 Theobroma cacao HOM05D004814 ORTHO05D005778 6.8e-54 214.5 193 65.3
Carub.0003s1246 Capsella rubella HOM05D004814 ORTHO05D005778 8.9e-54 214.2 197 66.0
PGSC0003DMG400014378 Solanum tuberosum HOM05D004814 ORTHO05D005778 8.9e-54 214.2 190 65.3
CAN.G492.31 Capsicum annuum HOM05D004814 ORTHO05D005778 1.2e-53 213.8 195 64.6
CARHR087710 Cardamine hirsuta HOM05D004814 ORTHO05D005778 1.2e-53 213.8 194 63.4
AT3G13120 Arabidopsis thaliana HOM05D004814 ORTHO05D005778 2.0e-53 213.0 192 62.5
Atru.chr2.3664 Acer truncatum HOM05D004814 ORTHO05D005778 2.6e-53 212.6 196 64.8
C03p46130 Brassica napus HOM05D004814 ORTHO05D005778 3.4e-53 212.2 195 63.1
PGR031G1774 Punica granatum HOM05D004814 ORTHO05D005778 3.4e-53 212.2 190 64.2
BcaC01g04010 Brassica carinata HOM05D004814 ORTHO05D005778 4.4e-53 211.8 195 62.6
BolC3t16886H Brassica oleracea HOM05D004814 ORTHO05D005778 4.4e-53 211.8 195 62.6
BraA03t12957Z Brassica rapa HOM05D004814 ORTHO05D005778 4.4e-53 211.8 201 61.7
SGA_v2.0_scaffold8G04398 Striga asiatica HOM05D004814 ORTHO05D005778 4.4e-53 211.8 191 60.2
Aa31LG8G330 Aethionema arabicum HOM05D004814 ORTHO05D005778 5.8e-53 211.5 201 61.7
AL3G24860 Arabidopsis lyrata HOM05D004814 ORTHO05D005778 5.8e-53 211.5 192 63.0
Duzib213G0234 Durio zibethinus HOM05D004814 ORTHO05D005778 5.8e-53 211.5 198 63.6
Actinidia05019 Actinidia chinensis HOM05D004814 ORTHO05D005778 7.5e-53 211.1 202 66.3
Nitab4.5_0006756g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 7.5e-53 211.1 190 65.3
Oeu049351.1 Olea europaea HOM05D004814 ORTHO05D005778 7.5e-53 211.1 192 64.1
Oeu057089.1 Olea europaea HOM05D004814 ORTHO05D005778 7.5e-53 211.1 191 62.8
Solyc10g006030.3 Solanum lycopersicum HOM05D004814 ORTHO05D005778 7.5e-53 211.1 190 64.7
CSS0025876 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 9.9e-53 210.7 203 63.5
Nitab4.5_0003491g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 1.3e-52 210.3 191 65.4
Sp3g11290 Schrenkiella parvula HOM05D004814 ORTHO05D005778 1.3e-52 210.3 201 61.2
Ah.06g181280 Amaranthus hybridus HOM05D004814 ORTHO05D005778 1.7e-52 209.9 190 63.7
EL10Ac4g07605 Beta vulgaris HOM05D004814 ORTHO05D005778 2.2e-52 209.5 198 62.6
BcaC05g29209 Brassica carinata HOM05D004814 ORTHO05D005778 2.9e-52 209.1 202 60.9
A05p36420 Brassica napus HOM05D004814 ORTHO05D005778 2.9e-52 209.1 197 63.5
C05p54820 Brassica napus HOM05D004814 ORTHO05D005778 2.9e-52 209.1 202 60.9
BolC5t34154H Brassica oleracea HOM05D004814 ORTHO05D005778 2.9e-52 209.1 202 60.9
Thhalv10021566m.g Eutrema salsugineum HOM05D004814 ORTHO05D005778 2.9e-52 209.1 198 62.1
AUR62017069 Chenopodium quinoa HOM05D004814 ORTHO05D005778 3.7e-52 208.8 200 63.0
TAR626G1431 Trochodendron aralioides HOM05D004814 ORTHO05D005778 3.7e-52 208.8 205 61.5
BcaB06g25486 Brassica carinata HOM05D004814 ORTHO05D005778 4.9e-52 208.4 196 62.8
Ah.04g166490 Amaranthus hybridus HOM05D004814 ORTHO05D005778 6.4e-52 208.0 190 62.1
AUR62036421 Chenopodium quinoa HOM05D004814 ORTHO05D005778 6.4e-52 208.0 200 63.0
AUR62036427 Chenopodium quinoa HOM05D004814 ORTHO05D005778 6.4e-52 208.0 200 63.0
AUR62040646 Chenopodium quinoa HOM05D004814 ORTHO05D005778 6.4e-52 208.0 200 63.0
Potri.001G365600 Populus trichocarpa HOM05D004814 ORTHO05D005778 6.4e-52 208.0 210 59.5
Sabra16G0239200 Salix brachista HOM05D004814 ORTHO05D005778 6.4e-52 208.0 211 58.3
BraA05t22442Z Brassica rapa HOM05D004814 ORTHO05D005778 8.3e-52 207.6 198 61.6
Sc16g0007970 Simmondsia chinensis HOM05D004814 ORTHO05D005778 8.3e-52 207.6 198 61.1
TAR629G3287 Trochodendron aralioides HOM05D004814 ORTHO05D005778 8.3e-52 207.6 204 59.8
A01p40420 Brassica napus HOM05D004814 ORTHO05D005778 1.1e-51 207.2 198 63.1
BraA01t04077Z Brassica rapa HOM05D004814 ORTHO05D005778 1.1e-51 207.2 198 63.1
THA.LOC104815700 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 1.9e-51 206.5 199 61.8
COL.COLO4_09806 Corchorus olitorius HOM05D004814 ORTHO05D005778 3.2e-51 205.7 201 61.7
ECA240G4731 Erigeron canadensis HOM05D001580 ORTHO05D001517 3.2e-51 205.7 134 76.1
Rhsim06G0227300 Rhododendron simsii HOM05D004814 ORTHO05D005778 3.2e-51 205.7 204 60.3
THA.LOC104810287 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 5.4e-51 204.9 199 60.3
Hund01909 Selenicereus undatus HOM05D004814 ORTHO05D005778 7.1e-51 204.5 197 62.4
Aa31LG10G250 Aethionema arabicum HOM05D004814 ORTHO05D005778 9.2e-51 204.1 197 62.4
MSTRG.14478 Avicennia marina HOM05D004814 ORTHO05D005778 2.1e-50 203.0 193 61.7
Cc05_g14790 Coffea canephora HOM05D004814 ORTHO05D005778 2.1e-50 203.0 195 61.0
PSO675G8482 Papaver somniferum HOM05D004814 ORTHO05D005778 2.7e-50 202.6 210 59.5
Eucgr.F03697 Eucalyptus grandis HOM05D004814 ORTHO05D005778 3.5e-50 202.2 193 61.7
Peaxi162Scf00900g00010 Petunia axillaris HOM05D004814 ORTHO05D005778 3.5e-50 202.2 139 77.0
vmacro22713 Vaccinium macrocarpon HOM05D004814 ORTHO05D005778 3.5e-50 202.2 204 60.3
HanXRQChr03g0061321 Helianthus annuus HOM05D004814 ORTHO05D005778 6.0e-50 201.4 187 62.0
PSO541G0969 Papaver somniferum HOM05D004814 ORTHO05D005778 6.0e-50 201.4 208 59.1
THA.LOC104822735 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 6.0e-50 201.4 197 60.4
Nn1g03216 Nelumbo nucifera HOM05D004814 ORTHO05D005778 3.0e-49 199.1 208 58.7
Actinidia05024 Actinidia chinensis HOM05D004814 ORTHO05D005778 8.6e-49 197.6 189 65.1
unitig_62.g23297 Utricularia gibba HOM05D004814 ORTHO05D005778 1.9e-48 196.4 195 60.0
Aqoxy4G02247 Aquilegia oxysepala HOM05D004814 ORTHO05D005778 3.3e-48 195.7 196 60.2
A01p40680 Brassica napus HOM05D004814 ORTHO05D005778 3.3e-48 195.7 190 61.6
Os03g0196800 Oryza sativa ssp. japonica HOM05D004814 ORTHO05D005778 4.3e-48 195.3 112 82.1
HanXRQChr13g0408121 Helianthus annuus HOM05D004814 ORTHO05D005778 9.5e-48 194.1 193 61.1
CSS0019029 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 1.2e-47 193.7 124 79.0
Lj1P888T30 Lonicera japonica HOM05D004814 ORTHO05D005778 2.1e-47 193.0 104 90.4
VMungo0248G0001 Vigna mungo HOM05D004814 ORTHO05D005778 3.6e-47 192.2 104 89.4
Cpa.g.sc12.175 Carica papaya HOM05D004814 ORTHO05D005778 8.1e-47 191.0 104 89.4
ATR0624G087 Amborella trichopoda HOM05D004814 ORTHO05D005778 1.8e-46 189.9 104 88.5
Zm00001eb008100 Zea mays HOM05D004814 ORTHO05D005778 3.1e-46 189.1 192 57.3
CDE10G1086 Ceratophyllum demersum HOM05D004814 ORTHO05D005778 4.0e-46 188.7 111 82.9
Zm00001eb401060 Zea mays HOM05D004814 ORTHO05D005778 4.0e-46 188.7 196 58.2
HPP92_020399 Vanilla planifolia HOM05D004814 ORTHO05D005778 1.5e-45 186.8 192 58.3
BraA01t04102Z Brassica rapa HOM05D004814 ORTHO05D005778 4.4e-45 185.3 104 87.5
QL05p065674 Quercus lobata HOM05D004814 ORTHO05D005778 5.8e-45 184.9 110 85.5
C01p51960 Brassica napus HOM05D004814 ORTHO05D005778 7.1e-43 177.9 145 66.9
MBI19_g45743_MAGBIO Magnolia biondii HOM05D004814 ORTHO05D005778 2.7e-42 176.0 100 82.0
QL05p065593 Quercus lobata HOM05D004814 ORTHO05D005778 1.3e-41 173.7 103 85.4
AagrBONN_evm.TU.Sc2ySwM_117.1321 Anthoceros agrestis HOM05D004814 ORTHO05D005778 2.0e-37 159.8 124 65.3
PSO832G2117 Papaver somniferum HOM05D004814 ORTHO05D005778 2.0e-37 159.8 208 51.0
Pp3c24_19230 Physcomitrium patens HOM05D004814 ORTHO05D005778 5.8e-37 158.3 156 53.8
Mapoly0009s0107 Marchantia polymorpha HOM05D004814 ORTHO05D005778 7.6e-37 157.9 115 67.8
Pp3c8_18990 Physcomitrium patens HOM05D004814 ORTHO05D005778 1.7e-36 156.8 156 53.8
Pp3c20_8830 Physcomitrium patens HOM05D004814 ORTHO05D005778 2.2e-36 156.4 132 61.4
SEGI_32296 Sequoiadendron giganteum HOM05D004814 ORTHO05D005778 4.6e-34 148.7 101 72.3
CBR_g19640 Chara braunii HOM05D004814 ORTHO05D005778 1.6e-31 140.2 206 42.7
MSTRG.13015 Avicennia marina HOM05D004814 ORTHO05D005778 2.1e-31 139.8 149 57.0
MCO07G521 Micromonas commoda HOM05D004814 ORTHO05D005778 1.7e-28 130.2 99 62.6
SMO228G0012 Selaginella moellendorffii HOM05D004814 ORTHO05D005778 3.8e-28 129.0 102 58.8
PRCOL_00000430 Prasinoderma coloniale HOM05D004814 ORTHO05D005778 1.8e-22 110.2 100 53.0
Cre03.g195650 Chlamydomonas reinhardtii HOM05D004814 ORTHO05D005778 8.4e-20 101.3 142 37.3
VMungo0540G0735 Vigna mungo HOM05D004814 ORTHO05D005778 5.8e-13 78.6 105 56.2
PGR142G2751 Punica granatum HOM05D001946 ORTHO05D002111 1.8e-06 57.0 100 35.0


User provided reference genes

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