Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr3g029930 Medicago truncatula HOM05D001080 ORTHO05D038148 3.8e-35 151.0 77 100.0
Psat6g002520 Pisum sativum HOM05D001080 ORTHO05D001081 8.2e-22 106.7 72 77.8
TPR.G12606 Trifolium pratense HOM05D001080 ORTHO05D001081 9.0e-21 103.2 73 75.3
Ca_27957_v3 Cicer arietinum L. HOM05D001080 ORTHO05D001081 1.2e-20 102.8 73 71.2
Ca_25391_v3 Cicer arietinum L. HOM05D001080 ORTHO05D001081 2.6e-20 101.7 73 69.9
TPR.G29500 Trifolium pratense HOM05D001080 ORTHO05D001081 3.4e-20 101.3 72 75.0
TPR.G23272 Trifolium pratense HOM05D001080 ORTHO05D001081 5.9e-20 100.5 72 76.4
Lalb_Chr01g0010731 Lupinus albus HOM05D001080 ORTHO05D001081 1.8e-16 89.0 74 62.2
Medtr7g059170 Medicago truncatula HOM05D001080 ORTHO05D001081 6.7e-16 87.0 74 67.6
arahy.Tifrunner.gnm1.ann1.8J5IWL Arachis hypogaea HOM05D001080 ORTHO05D001081 2.8e-14 81.6 75 62.7
arahy.Tifrunner.gnm1.ann1.86IE7K Arachis hypogaea HOM05D001080 ORTHO05D001081 3.7e-14 81.3 75 62.7
arahy.Tifrunner.gnm1.ann1.W7T2QR Arachis hypogaea HOM05D001080 ORTHO05D001081 3.7e-14 81.3 75 62.7
arahy.Tifrunner.gnm1.ann1.76TZ3N Arachis hypogaea HOM05D001080 ORTHO05D001081 4.8e-14 80.9 75 62.7
Phvul.001G104800 Phaseolus vulgaris HOM05D001080 ORTHO05D001081 2.4e-13 78.6 71 63.4
VMungo1383G1927 Vigna mungo HOM05D001080 ORTHO05D001081 2.4e-13 78.6 73 63.0
Glyma.16G036200 Glycine max HOM05D001080 ORTHO05D001081 1.5e-12 75.9 71 63.4
Lj4g0011035 Lotus japonicus HOM05D001080 ORTHO05D001081 1.5e-12 75.9 72 59.7
CiPaw.15G142600 Carya illinoinensis HOM05D001080 ORTHO05D001081 4.5e-12 74.3 74 56.8
Glyma.19G116600 Glycine max HOM05D001080 ORTHO05D001081 1.3e-11 72.8 71 60.6
CiPaw.01G253500 Carya illinoinensis HOM05D001080 ORTHO05D001081 1.7e-11 72.4 73 53.4
CAN.G407.52 Capsicum annuum HOM05D001080 ORTHO05D001081 5.0e-11 70.9 72 52.8
Cc04_g04960 Coffea canephora HOM05D001080 ORTHO05D001081 5.0e-11 70.9 72 54.2
Actinidia18241 Actinidia chinensis HOM05D001080 ORTHO05D038148 6.5e-11 70.5 72 54.2
MSTRG.22788 Avicennia marina HOM05D001080 ORTHO05D001081 6.5e-11 70.5 73 52.1
Actinidia25455 Actinidia chinensis HOM05D001080 ORTHO05D001081 8.5e-11 70.1 72 54.2
Rhsim12G0188200 Rhododendron simsii HOM05D001080 ORTHO05D001081 8.5e-11 70.1 72 52.8
CSS0003712 Camellia sinensis var. sinensis HOM05D001080 ORTHO05D001081 1.1e-10 69.7 72 51.4
CSS0004823 Camellia sinensis var. sinensis HOM05D001080 ORTHO05D001081 1.1e-10 69.7 72 51.4
Oeu060124.1 Olea europaea HOM05D001080 ORTHO05D001081 1.9e-10 68.9 75 49.3
Nitab4.5_0001454g0110 Nicotiana tabacum HOM05D001080 ORTHO05D009993 2.5e-10 68.6 72 52.8
Nitab4.5_0012943g0010 Nicotiana tabacum HOM05D001080 ORTHO05D001081 2.5e-10 68.6 72 51.4
Solyc03g117060.4 Solanum lycopersicum HOM05D001080 ORTHO05D001081 2.5e-10 68.6 68 54.4
PGSC0003DMG400014191 Solanum tuberosum HOM05D001080 ORTHO05D001081 2.5e-10 68.6 68 52.9
unitig_52.g17473 Utricularia gibba HOM05D001080 ORTHO05D001081 2.5e-10 68.6 73 49.3
Nitab4.5_0000373g0260 Nicotiana tabacum HOM05D001080 ORTHO05D001081 3.2e-10 68.2 72 51.4
Solyc06g068400.3 Solanum lycopersicum HOM05D001080 ORTHO05D001081 3.2e-10 68.2 72 51.4
Sopen03g035970 Solanum pennellii HOM05D001080 ORTHO05D001081 3.2e-10 68.2 68 52.9
Sopen06g025660 Solanum pennellii HOM05D001080 ORTHO05D001081 3.2e-10 68.2 72 51.4
PGSC0003DMG400028524 Solanum tuberosum HOM05D001080 ORTHO05D001081 3.2e-10 68.2 72 51.4
CARHR073730 Cardamine hirsuta HOM05D001080 ORTHO05D001081 5.5e-10 67.4 73 53.4
Nitab4.5_0013947g0010 Nicotiana tabacum HOM05D001080 ORTHO05D001081 5.5e-10 67.4 74 52.7
Cfa008147 Carpinus fangiana HOM05D001080 ORTHO05D001081 7.2e-10 67.0 74 50.0
Haze_13895 Corylus avellana HOM05D001080 ORTHO05D001081 9.4e-10 66.6 74 50.0
CsaV3_3G049630 Cucumis sativus L. HOM05D001080 ORTHO05D001081 9.4e-10 66.6 73 53.4
CsaV3_3G049880 Cucumis sativus L. HOM05D001080 ORTHO05D001081 9.4e-10 66.6 73 53.4
Oeu027832.1 Olea europaea HOM05D001080 ORTHO05D001081 9.4e-10 66.6 75 48.0
Hma1.2p1_0135F.1_g061840 Hydrangea macrophylla HOM05D001080 ORTHO05D001081 1.6e-09 65.9 72 47.2
Peaxi162Scf00332g00426 Petunia axillaris HOM05D001080 ORTHO05D001081 1.6e-09 65.9 72 48.6
AUR62036417 Chenopodium quinoa HOM05D001080 ORTHO05D001081 2.1e-09 65.5 73 47.9
MELO3C027392.2 Cucumis melo HOM05D001080 ORTHO05D001081 2.1e-09 65.5 73 53.4
PSO017G7231 Papaver somniferum HOM05D001080 ORTHO05D001081 2.7e-09 65.1 73 46.6
PSO832G1782 Papaver somniferum HOM05D001080 ORTHO05D001081 2.7e-09 65.1 73 46.6
SalBow6G3360 Salvia bowleyana HOM05D001080 ORTHO05D001081 2.7e-09 65.1 74 48.6
SalBow6G5685 Salvia bowleyana HOM05D001080 ORTHO05D001081 2.7e-09 65.1 74 48.6
HanXRQChr16g0499641 Helianthus annuus HOM05D001080 ORTHO05D001081 3.6e-09 64.7 72 47.2
PSO675G5889 Papaver somniferum HOM05D001080 ORTHO05D001081 3.6e-09 64.7 73 45.2
QL03p024800 Quercus lobata HOM05D001080 ORTHO05D001081 4.6e-09 64.3 77 48.1
Sp5g35010 Schrenkiella parvula HOM05D001080 ORTHO05D001081 6.1e-09 63.9 73 50.7
GSVIVG01034230001 Vitis vinifera HOM05D001080 ORTHO05D001081 6.1e-09 63.9 73 47.9
EL10Ac9g22221 Beta vulgaris HOM05D001080 ORTHO05D001081 7.9e-09 63.5 73 45.2
SHI11248 Sapria himalayana HOM05D001080 ORTHO05D001081 7.9e-09 63.5 77 48.1
SGA_v2.0_scaffold37G14724 Striga asiatica HOM05D001080 ORTHO05D001081 7.9e-09 63.5 74 43.2
AL2G40650 Arabidopsis lyrata HOM05D001080 ORTHO05D001081 1.0e-08 63.2 73 47.9
BcaC08g45337 Brassica carinata HOM05D001080 ORTHO05D001081 1.0e-08 63.2 76 51.3
A07p26840 Brassica napus HOM05D001080 ORTHO05D001081 1.0e-08 63.2 72 51.4
BolC6t38113H Brassica oleracea HOM05D001080 ORTHO05D001081 1.0e-08 63.2 76 51.3
BraA07t30327Z Brassica rapa HOM05D001080 ORTHO05D001081 1.0e-08 63.2 72 51.4
Carub.0002s2679 Capsella rubella HOM05D001080 ORTHO05D001081 1.0e-08 63.2 74 50.0
AUR62017081 Chenopodium quinoa HOM05D001080 ORTHO05D001081 1.0e-08 63.2 73 46.6
AUR62036438 Chenopodium quinoa HOM05D001080 ORTHO05D001081 1.0e-08 63.2 73 46.6
AT1G80750 Arabidopsis thaliana HOM05D001080 ORTHO05D001081 1.8e-08 62.4 73 46.6
C06p29490 Brassica napus HOM05D001080 ORTHO05D001081 1.8e-08 62.4 74 52.7
ATR1153G062 Amborella trichopoda HOM05D001080 ORTHO05D001081 2.3e-08 62.0 74 45.9
CANSAT01G3159 Cannabis sativa HOM05D001080 ORTHO05D001081 2.3e-08 62.0 73 46.6
CANSAT21G2626 Cannabis sativa HOM05D001080 ORTHO05D001081 2.3e-08 62.0 73 46.6
CANSAT80G2679 Cannabis sativa HOM05D001080 ORTHO05D001081 2.3e-08 62.0 73 46.6
Dinv23297 Davidia involucrata HOM05D001080 ORTHO05D001081 3.0e-08 61.6 67 49.3
Sed0008605 Sechium edule HOM05D001080 ORTHO05D001081 3.0e-08 61.6 76 50.0
BcaB05g25232 Brassica carinata HOM05D001080 ORTHO05D001081 3.9e-08 61.2 67 52.2
RcHm_v2.0_Chr2g0133291 Rosa chinensis HOM05D001080 ORTHO05D001081 3.9e-08 61.2 73 49.3
Hund06527 Selenicereus undatus HOM05D001080 ORTHO05D001081 3.9e-08 61.2 76 44.7
Sc10g0006200 Simmondsia chinensis HOM05D001080 ORTHO05D001081 3.9e-08 61.2 73 50.7
Ah.01g006820 Amaranthus hybridus HOM05D001080 ORTHO05D001081 5.1e-08 60.8 73 43.8
A02p23200 Brassica napus HOM05D001080 ORTHO05D001081 5.1e-08 60.8 69 50.7
ECA232G1104 Erigeron canadensis HOM05D001080 ORTHO05D001081 5.1e-08 60.8 72 44.4
BcaB02g07249 Brassica carinata HOM05D001080 ORTHO05D001081 8.8e-08 60.1 67 52.2
BcaC03g15937 Brassica carinata HOM05D001080 ORTHO05D001081 1.1e-07 59.7 67 50.7
C02p36970 Brassica napus HOM05D001080 ORTHO05D001081 1.1e-07 59.7 67 50.7
BolC2t09712H Brassica oleracea HOM05D001080 ORTHO05D001081 1.1e-07 59.7 67 50.7
BraA02t07317Z Brassica rapa HOM05D001080 ORTHO05D001081 1.1e-07 59.7 67 50.7
CANSAT35G0318 Cannabis sativa HOM05D001080 ORTHO05D001081 1.1e-07 59.7 73 45.2
CAN.G1490.9 Capsicum annuum HOM05D001080 ORTHO05D001081 1.1e-07 59.7 74 45.9
Potri.001G047400 Populus trichocarpa HOM05D001080 ORTHO05D001081 1.1e-07 59.7 74 47.3
Migut.I00714 Erythranthe guttata HOM05D001080 ORTHO05D001081 2.0e-07 58.9 72 43.1
FvH4_6g28820 Fragaria vesca HOM05D001080 ORTHO05D001081 2.0e-07 58.9 72 47.2
PGR031G0594 Punica granatum HOM05D001080 ORTHO05D001081 2.0e-07 58.9 73 49.3
Sabra01G0032700 Salix brachista HOM05D001080 ORTHO05D001081 2.0e-07 58.9 74 50.0
SalBow5G4853 Salvia bowleyana HOM05D001080 ORTHO05D001081 2.0e-07 58.9 61 52.5
SalBow5G5617 Salvia bowleyana HOM05D001080 ORTHO05D001081 2.0e-07 58.9 61 52.5
Thhalv10019044m.g Eutrema salsugineum HOM05D001080 ORTHO05D001081 2.6e-07 58.5 74 45.9
HanXRQChr09g0274511 Helianthus annuus HOM05D001080 ORTHO05D001081 2.6e-07 58.5 72 45.8
Manes.11G064900 Manihot esculenta HOM05D001080 ORTHO05D001081 2.6e-07 58.5 74 50.0
Nn8g39801 Nelumbo nucifera HOM05D001080 ORTHO05D001081 2.6e-07 58.5 73 45.2
FAN05G3781 Fragaria x ananassa HOM05D001080 ORTHO05D001081 3.3e-07 58.2 72 47.2
FAN09G1387 Fragaria x ananassa HOM05D001080 ORTHO05D001081 3.3e-07 58.2 72 47.2
MD00G1084000 Malus domestica HOM05D001080 ORTHO05D001081 3.3e-07 58.2 67 49.3
MD17G1221600 Malus domestica HOM05D001080 ORTHO05D001081 3.3e-07 58.2 73 45.2
vmacro16863 Vaccinium macrocarpon HOM05D001080 ORTHO05D001081 3.3e-07 58.2 71 49.3
Atru.chr10.2401 Acer truncatum HOM05D001080 ORTHO05D001081 5.7e-07 57.4 76 44.7
FAN02G0347 Fragaria x ananassa HOM05D001080 ORTHO05D001081 5.7e-07 57.4 72 45.8
TAR626G1655 Trochodendron aralioides HOM05D001080 ORTHO05D001081 5.7e-07 57.4 73 42.5
CDE04G3681 Ceratophyllum demersum HOM05D001080 ORTHO05D001081 1.3e-06 56.2 70 40.0
Lsat_1_v5_gn_9_5521 Lactuca sativa HOM05D001080 ORTHO05D001081 1.3e-06 56.2 72 44.4
THA.LOC104808182 Tarenaya hassleriana HOM05D001080 ORTHO05D001081 1.3e-06 56.2 73 46.6
THA.LOC104812434 Tarenaya hassleriana HOM05D001080 ORTHO05D001081 1.3e-06 56.2 76 42.1
Potri.003G180700 Populus trichocarpa HOM05D001080 ORTHO05D001081 1.7e-06 55.8 74 45.9
Atru.chr6.2571 Acer truncatum HOM05D001080 ORTHO05D001081 2.2e-06 55.5 77 45.5
AagrBONN_evm.TU.Sc2ySwM_362.2540 Anthoceros agrestis HOM05D001080 ORTHO05D001081 2.2e-06 55.5 73 43.8
Sabra03G0132200 Salix brachista HOM05D001080 ORTHO05D001081 2.2e-06 55.5 74 45.9
Hund06148 Selenicereus undatus HOM05D001080 ORTHO05D001081 2.2e-06 55.5 76 40.8
TWI18G1267 Tripterygium wilfordii HOM05D001080 ORTHO05D001081 2.2e-06 55.5 73 43.8
HPP92_002021 Vanilla planifolia HOM05D001080 ORTHO05D001081 2.2e-06 55.5 72 37.5
ATR0829G183 Amborella trichopoda HOM05D001080 ORTHO05D001081 2.8e-06 55.1 71 42.3
Manes.08G117400 Manihot esculenta HOM05D001080 ORTHO05D001081 2.8e-06 55.1 71 46.5
CDE03G0425 Ceratophyllum demersum HOM05D001080 ORTHO05D001081 3.7e-06 54.7 70 38.6
Prupe.3G096800 Prunus persica HOM05D001080 ORTHO05D001081 3.7e-06 54.7 73 41.1
TAR362G1007 Trochodendron aralioides HOM05D001080 ORTHO05D001081 3.7e-06 54.7 71 42.3
Aa31LG4G1010 Aethionema arabicum HOM05D001080 ORTHO05D001081 6.3e-06 53.9 74 44.6
Aqoxy7G03466 Aquilegia oxysepala HOM05D001080 ORTHO05D001081 6.3e-06 53.9 73 39.7
DCAR_025577 Daucus carota HOM05D001080 ORTHO05D001081 8.2e-06 53.5 76 42.1


User provided reference genes

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