Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr3g027870 Medicago truncatula HOM05D006647 ORTHO05D008232 7.5e-158 560.5 279 100.0
TPR.G12287 Trifolium pratense HOM05D006647 ORTHO05D008232 2.4e-132 475.7 280 87.9
Psat5g204920 Pisum sativum HOM05D006647 ORTHO05D008232 4.4e-126 454.9 284 83.8
Lj5g0023478 Lotus japonicus HOM05D006647 ORTHO05D008232 1.2e-110 403.7 273 78.4
Lalb_Chr25g0283211 Lupinus albus HOM05D006647 ORTHO05D008232 1.9e-108 396.4 272 77.2
Glyma.08G152700 Glycine max HOM05D006647 ORTHO05D008232 3.2e-108 395.6 268 76.5
Phvul.005G036700 Phaseolus vulgaris HOM05D006647 ORTHO05D008232 9.3e-108 394.0 273 75.8
VMungo1080G0119 Vigna mungo HOM05D006647 ORTHO05D008232 3.3e-105 385.6 270 74.4
arahy.Tifrunner.gnm1.ann1.K7GJAS Arachis hypogaea HOM05D006647 ORTHO05D008232 1.3e-104 383.6 274 74.8
arahy.Tifrunner.gnm1.ann1.BH4E67 Arachis hypogaea HOM05D006647 ORTHO05D008232 2.1e-104 382.9 274 74.1
Dinv09377 Davidia involucrata HOM05D006647 ORTHO05D008232 1.0e-98 364.0 273 69.6
Haze_03236 Corylus avellana HOM05D006647 ORTHO05D008232 3.0e-98 362.5 270 70.0
Cfa010738 Carpinus fangiana HOM05D006647 ORTHO05D008232 3.9e-98 362.1 271 70.8
TWI73G0313 Tripterygium wilfordii HOM05D006647 ORTHO05D008232 1.1e-97 360.5 264 70.1
CiPaw.13G002900 Carya illinoinensis HOM05D006647 ORTHO05D008232 4.8e-96 355.1 278 67.6
Potri.009G064500 Populus trichocarpa HOM05D006647 ORTHO05D008232 5.3e-95 351.7 277 66.8
Atru.chr11.2639 Acer truncatum HOM05D006647 ORTHO05D008232 9.0e-95 350.9 271 67.9
THA.LOC104801981 Tarenaya hassleriana HOM05D006647 ORTHO05D008232 5.8e-94 348.2 267 67.0
CSS0029691 Camellia sinensis var. sinensis HOM05D006647 ORTHO05D008232 6.5e-93 344.7 290 64.1
Hma1.2p1_0929F.1_g237940 Hydrangea macrophylla HOM05D006647 ORTHO05D008232 8.4e-93 344.4 202 79.2
PSO339G5555 Papaver somniferum HOM05D006647 ORTHO05D008232 8.4e-93 344.4 272 64.3
Manes.07G004100 Manihot esculenta HOM05D006647 ORTHO05D008232 1.1e-92 344.0 277 65.7
CsaV3_7G031240 Cucumis sativus L. HOM05D006647 ORTHO05D008232 3.2e-92 342.4 257 68.5
Thecc.01G413900 Theobroma cacao HOM05D006647 ORTHO05D008232 5.5e-92 341.7 274 66.4
QL04p005221 Quercus lobata HOM05D006647 ORTHO05D008232 1.6e-91 340.1 280 65.0
GSVIVG01032057001 Vitis vinifera HOM05D006647 ORTHO05D008232 1.6e-91 340.1 271 66.8
Lj9A629T102 Lonicera japonica HOM05D006647 ORTHO05D008232 2.1e-91 339.7 204 78.9
Ciclev10032303m.g Citrus clementina HOM05D006647 ORTHO05D008232 2.7e-91 339.3 255 69.4
Nn2g15502 Nelumbo nucifera HOM05D006647 ORTHO05D008232 2.7e-91 339.3 270 66.3
FAN03G0714 Fragaria x ananassa HOM05D006647 ORTHO05D008232 3.5e-91 339.0 264 64.8
FAN06G3601 Fragaria x ananassa HOM05D006647 ORTHO05D008232 1.8e-90 336.7 214 75.7
FAN10G4164 Fragaria x ananassa HOM05D006647 ORTHO05D008232 1.8e-90 336.7 214 75.7
Sabra09G0047700 Salix brachista HOM05D006647 ORTHO05D008232 1.8e-90 336.7 274 65.3
MD07G1006600 Malus domestica HOM05D006647 ORTHO05D008232 2.3e-90 336.3 258 70.2
FvH4_7g00690 Fragaria vesca HOM05D006647 ORTHO05D008232 3.0e-90 335.9 264 64.0
CARHR291410 Cardamine hirsuta HOM05D006647 ORTHO05D008232 5.1e-90 335.1 257 67.7
Actinidia20680 Actinidia chinensis HOM05D006647 ORTHO05D008232 6.7e-90 334.7 269 68.4
PSO384G2587 Papaver somniferum HOM05D006647 ORTHO05D008232 6.7e-90 334.7 274 63.9
Nitab4.5_0011905g0020 Nicotiana tabacum HOM05D006647 ORTHO05D008232 1.5e-89 333.6 271 64.2
RcHm_v2.0_Chr1g0314911 Rosa chinensis HOM05D006647 ORTHO05D008232 1.5e-89 333.6 250 67.6
Sp1g00030 Schrenkiella parvula HOM05D006647 ORTHO05D008232 2.5e-89 332.8 261 66.3
Sp5g00020 Schrenkiella parvula HOM05D006647 ORTHO05D008232 2.5e-89 332.8 261 66.3
Peaxi162Scf00428g00819 Petunia axillaris HOM05D006647 ORTHO05D008232 4.3e-89 332.0 271 64.6
CANSAT01G0516 Cannabis sativa HOM05D006647 ORTHO05D008232 9.6e-89 330.9 278 64.0
Thhalv10006150m.g Eutrema salsugineum HOM05D006647 ORTHO05D008232 1.3e-88 330.5 229 69.4
TAR633G0758 Trochodendron aralioides HOM05D006647 ORTHO05D008232 1.3e-88 330.5 272 65.1
AL5G46420 Arabidopsis lyrata HOM05D006647 ORTHO05D008232 2.1e-88 329.7 257 66.1
Carub.0005s3017 Capsella rubella HOM05D006647 ORTHO05D008232 2.1e-88 329.7 266 62.0
Prupe.2G009700 Prunus persica HOM05D006647 ORTHO05D008232 2.1e-88 329.7 219 73.5
Nitab4.5_0001542g0050 Nicotiana tabacum HOM05D006647 ORTHO05D008232 6.3e-88 328.2 271 63.8
Sc11g0009300 Simmondsia chinensis HOM05D006647 ORTHO05D008232 1.1e-87 327.4 279 63.4
Solyc01g086900.4 Solanum lycopersicum HOM05D006647 ORTHO05D008232 1.4e-87 327.0 272 64.0
Sopen01g033910 Solanum pennellii HOM05D006647 ORTHO05D008232 5.3e-87 325.1 272 63.6
Sed0007518 Sechium edule HOM05D006647 ORTHO05D008232 9.0e-87 324.3 250 67.6
AT5G26880 Arabidopsis thaliana HOM05D006647 ORTHO05D008232 1.2e-86 323.9 269 61.0
BcaC01g03971 Brassica carinata HOM05D006647 ORTHO05D008232 2.6e-86 322.8 273 61.2
DCAR_006301 Daucus carota HOM05D006647 ORTHO05D008232 5.9e-86 321.6 196 78.6
Eucgr.G03394 Eucalyptus grandis HOM05D006647 ORTHO05D008232 1.7e-85 320.1 266 65.0
HanXRQChr01g0017301 Helianthus annuus HOM05D006647 ORTHO05D008232 2.9e-85 319.3 257 65.4
BraA03t12997Z Brassica rapa HOM05D006647 ORTHO05D008232 1.1e-84 317.4 265 61.9
Gohir.D08G166600 Gossypium hirsutum HOM05D006647 ORTHO05D008232 2.5e-84 316.2 252 66.7
Gorai.004G174000 Gossypium raimondii HOM05D006647 ORTHO05D008232 3.2e-84 315.8 252 66.7
BolC3t16926H Brassica oleracea HOM05D006647 ORTHO05D008232 5.5e-84 315.1 255 62.7
C03p46630 Brassica napus HOM05D006647 ORTHO05D008232 9.3e-84 314.3 255 62.7
Gohir.A08G145600 Gossypium hirsutum HOM05D006647 ORTHO05D008232 9.3e-84 314.3 261 64.4
A03p38460 Brassica napus HOM05D006647 ORTHO05D008232 1.2e-83 313.9 255 62.7
Duzib138G0958 Durio zibethinus HOM05D006647 ORTHO05D008232 6.1e-83 311.6 251 66.1
COL.COLO4_23898 Corchorus olitorius HOM05D006647 ORTHO05D008232 1.8e-82 310.1 192 78.1
MSTRG.5006 Avicennia marina HOM05D006647 ORTHO05D008232 4.3e-81 305.4 275 60.0
HPP92_015763 Vanilla planifolia HOM05D006647 ORTHO05D008232 5.7e-81 305.1 249 64.7
Cc02_g28430 Coffea canephora HOM05D006647 ORTHO05D008232 4.8e-80 302.0 176 81.2
AUR62009372 Chenopodium quinoa HOM05D006647 ORTHO05D008232 1.1e-79 300.8 201 70.6
ATR0605G070 Amborella trichopoda HOM05D006647 ORTHO05D008232 4.5e-78 295.4 200 68.5
ClCG09G004320 Citrullus lanatus HOM05D006647 ORTHO05D008232 7.7e-78 294.7 261 62.1
Hund20080 Selenicereus undatus HOM05D006647 ORTHO05D008232 1.1e-76 290.8 201 73.1
EL10Ac2g04310 Beta vulgaris HOM05D006647 ORTHO05D008232 3.2e-76 289.3 223 65.0
MSTRG.5008 Avicennia marina HOM05D006647 ORTHO05D008232 1.2e-75 287.3 203 69.0
Migut.N01481 Erythranthe guttata HOM05D006647 ORTHO05D008232 6.1e-75 285.0 242 62.8
Rhsim01G0130800 Rhododendron simsii HOM05D006647 ORTHO05D008232 1.4e-74 283.9 348 50.0
Migut.O00562 Erythranthe guttata HOM05D006647 ORTHO05D008232 2.6e-73 279.6 177 74.6
SalBow4G2297 Salvia bowleyana HOM05D006647 ORTHO05D008232 1.7e-72 276.9 175 74.3
MBI01_g36432_MAGBIO Magnolia biondii HOM05D006647 ORTHO05D008232 2.2e-72 276.6 237 59.9
Lsat_1_v5_gn_1_109441 Lactuca sativa HOM05D006647 ORTHO05D008232 2.0e-70 270.0 217 65.4
unitig_0.g1579 Utricularia gibba HOM05D006647 ORTHO05D008232 6.5e-69 265.0 263 53.2
CDE06G2349 Ceratophyllum demersum HOM05D006647 ORTHO05D008232 1.8e-66 256.9 191 64.9
SGA_v2.0_scaffold4G02252 Striga asiatica HOM05D006647 ORTHO05D008232 1.8e-66 256.9 270 55.6
Mapoly0078s0003 Marchantia polymorpha HOM05D006647 ORTHO05D008232 1.4e-63 247.3 202 58.4
A03p38500 Brassica napus HOM05D006647 ORTHO05D008232 9.1e-63 244.6 209 60.3
MBI04_g14259_MAGBIO Magnolia biondii HOM05D006647 ORTHO05D008232 9.1e-63 244.6 257 52.9
AUR62023053 Chenopodium quinoa HOM05D006647 ORTHO05D008232 3.2e-60 236.1 207 60.4
Pp3c8_11960 Physcomitrium patens HOM05D006647 ORTHO05D008232 6.1e-59 231.9 193 58.5
AagrBONN_evm.TU.Sc2ySwM_362.154 Anthoceros agrestis HOM05D006647 ORTHO05D008232 3.0e-58 229.6 159 66.7
ECA248G3327 Erigeron canadensis HOM05D006647 ORTHO05D008232 4.0e-58 229.2 205 61.5
CBR_g41537 Chara braunii HOM05D006647 ORTHO05D008232 3.7e-56 222.6 160 66.2
Pp3c23_8130 Physcomitrium patens HOM05D006647 ORTHO05D008232 4.8e-56 222.2 159 64.8
SMO351G0607 Selaginella moellendorffii HOM05D006647 ORTHO05D008232 8.2e-56 221.5 157 65.0
vmacro21178 Vaccinium macrocarpon HOM05D006647 ORTHO05D008232 8.2e-56 221.5 246 53.7
MELO3C023534.2 Cucumis melo HOM05D006647 ORTHO05D008232 1.2e-54 217.6 135 74.8
QL04p005246 Quercus lobata HOM05D000030 ORTHO05D008232 2.8e-48 196.4 161 62.7
Os08g0506500 Oryza sativa ssp. japonica HOM05D006647 ORTHO05D008232 7.0e-47 191.8 243 48.6
Cpa.g.sc234.12 Carica papaya HOM05D006647 ORTHO05D008232 2.0e-46 190.3 112 82.1
PGSC0003DMG400006881 Solanum tuberosum HOM05D006647 ORTHO05D008232 4.5e-46 189.1 115 77.4
FAN01G1843 Fragaria x ananassa HOM05D006647 ORTHO05D008232 5.0e-45 185.7 184 54.3
FAN01G0876 Fragaria x ananassa HOM05D006647 ORTHO05D008232 8.6e-45 184.9 170 57.1
Zm00001eb034920 Zea mays HOM05D006647 ORTHO05D008232 8.0e-43 178.3 141 66.7
MCO06G107 Micromonas commoda HOM05D006647 ORTHO05D008232 8.8e-42 174.9 159 56.6
Cre10.g417650 Chlamydomonas reinhardtii HOM05D006647 ORTHO05D008232 1.2e-41 174.5 203 46.8
Oeu010354.1 Olea europaea HOM05D006647 ORTHO05D008232 1.2e-41 174.5 109 77.1
Ca_26823_v3 Cicer arietinum L. HOM05D006647 ORTHO05D008232 2.0e-41 173.7 81 98.8
PGR031G3323 Punica granatum HOM05D006647 ORTHO05D008232 3.4e-41 172.9 135 64.4
Aa31LG10G17440 Aethionema arabicum HOM05D006647 ORTHO05D008232 5.9e-38 162.2 107 72.9
BcaB01g01017 Brassica carinata HOM05D006647 ORTHO05D008232 7.8e-38 161.8 107 71.0
BcaB04g18808 Brassica carinata HOM05D006647 ORTHO05D008232 7.8e-38 161.8 107 71.0
FAN01G1906 Fragaria x ananassa HOM05D006647 ORTHO05D008232 4.3e-36 156.0 94 78.7
Cc00_g30670 Coffea canephora HOM05D006647 ORTHO05D008232 6.1e-35 152.1 82 84.1
Cpa.g.sc234.13 Carica papaya HOM05D006647 ORTHO05D008232 1.2e-30 137.9 139 56.8
Ah.10g029810 Amaranthus hybridus HOM05D006647 ORTHO05D008232 1.6e-30 137.5 94 69.1
Aa31LG10G17450 Aethionema arabicum HOM05D006647 ORTHO05D008232 1.8e-26 124.0 160 45.6
MBI04_g09488_MAGBIO Magnolia biondii HOM05D006647 ORTHO05D008232 1.6e-22 110.9 81 65.4
PRCOL_00005260 Prasinoderma coloniale HOM05D006647 ORTHO05D008232 4.7e-19 99.4 209 34.9


User provided reference genes

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