Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr3g014750 Medicago truncatula HOM05D006097 ORTHO05D008538 0.0e+00 1155.6 580 100.0
TPR.G17806 Trifolium pratense HOM05D006097 ORTHO05D008538 2.2e-300 1035.0 581 89.0
Psat5g221440 Pisum sativum HOM05D006097 ORTHO05D008538 1.9e-288 995.3 578 86.0
Lj3g0013868 Lotus japonicus HOM05D006097 ORTHO05D008538 2.3e-262 908.7 577 78.9
Glyma.13G197200 Glycine max HOM05D006097 ORTHO05D008538 7.5e-261 903.7 578 77.9
Lalb_Chr19g0132421 Lupinus albus HOM05D006097 ORTHO05D008538 3.3e-256 888.3 579 77.9
QL04p017855 Quercus lobata HOM05D006097 ORTHO05D008538 6.0e-242 840.9 589 71.1
arahy.Tifrunner.gnm1.ann1.HF4B4K Arachis hypogaea HOM05D006097 ORTHO05D008538 4.4e-237 824.7 630 67.9
Haze_03039 Corylus avellana HOM05D006097 ORTHO05D008538 1.5e-232 809.7 536 71.6
Dinv22036 Davidia involucrata HOM05D006097 ORTHO05D008538 3.3e-232 808.5 580 69.3
CiPaw.14G007600 Carya illinoinensis HOM05D006097 ORTHO05D008538 6.8e-230 800.8 567 69.1
Actinidia21518 Actinidia chinensis HOM05D006097 ORTHO05D008538 8.9e-230 800.4 580 67.9
Prupe.2G036100 Prunus persica HOM05D006097 ORTHO05D008538 2.6e-229 798.9 579 69.1
GSVIVG01013488001 Vitis vinifera HOM05D006097 ORTHO05D008538 1.3e-228 796.6 583 67.4
Ciclev10004623m.g Citrus clementina HOM05D006097 ORTHO05D008538 8.4e-228 793.9 584 68.0
MD07G1040200 Malus domestica HOM05D006097 ORTHO05D008538 8.4e-228 793.9 580 68.1
Atru.chr7.628 Acer truncatum HOM05D006097 ORTHO05D008538 1.9e-227 792.7 582 68.7
Cfa010917 Carpinus fangiana HOM05D006097 ORTHO05D008538 5.4e-227 791.2 567 68.3
COL.COLO4_20657 Corchorus olitorius HOM05D006097 ORTHO05D008538 9.2e-227 790.4 580 65.5
Thecc.10G154600 Theobroma cacao HOM05D006097 ORTHO05D008538 8.1e-223 777.3 580 65.5
Phvul.011G206500 Phaseolus vulgaris HOM05D006097 ORTHO05D008538 4.0e-222 775.0 523 74.0
CANSAT56G2143 Cannabis sativa HOM05D006097 ORTHO05D008538 6.9e-222 774.2 569 64.9
Gohir.A06G175000 Gossypium hirsutum HOM05D006097 ORTHO05D008538 2.6e-221 772.3 580 65.2
Gohir.D06G184900 Gossypium hirsutum HOM05D006097 ORTHO05D008538 9.9e-221 770.4 580 65.0
Peaxi162Scf00767g00518 Petunia axillaris HOM05D006097 ORTHO05D008538 2.2e-220 769.2 535 68.4
Gorai.010G216200 Gossypium raimondii HOM05D006097 ORTHO05D008538 8.4e-220 767.3 582 64.9
PSO339G1331 Papaver somniferum HOM05D006097 ORTHO05D008538 1.4e-219 766.5 580 65.7
BraA04t16135Z Brassica rapa HOM05D006097 ORTHO05D008538 3.2e-219 765.4 582 63.9
BcaB02g08396 Brassica carinata HOM05D006097 ORTHO05D008538 5.4e-219 764.6 582 64.4
Manes.04G159300 Manihot esculenta HOM05D006097 ORTHO05D008538 9.3e-219 763.8 584 64.7
C04p36530 Brassica napus HOM05D006097 ORTHO05D008538 2.1e-218 762.7 582 63.6
THA.LOC104826726 Tarenaya hassleriana HOM05D006097 ORTHO05D008538 2.1e-218 762.7 580 63.3
Duzib114G0946 Durio zibethinus HOM05D006097 ORTHO05D008538 6.0e-218 761.1 580 64.5
A04p04190 Brassica napus HOM05D006097 ORTHO05D008538 1.0e-217 760.4 582 63.9
Nn2g14836 Nelumbo nucifera HOM05D006097 ORTHO05D008538 1.7e-217 759.6 580 65.0
RcHm_v2.0_Chr1g0324291 Rosa chinensis HOM05D006097 ORTHO05D008538 2.3e-217 759.2 577 66.6
BcaC02g09793 Brassica carinata HOM05D006097 ORTHO05D008538 3.0e-217 758.8 582 63.2
Hund13358 Selenicereus undatus HOM05D006097 ORTHO05D008538 3.0e-217 758.8 579 65.5
Thhalv10010237m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 2.5e-216 755.7 582 63.4
Sopen08g005450 Solanum pennellii HOM05D006097 ORTHO05D008538 2.1e-215 752.7 584 63.5
Sp5g06630 Schrenkiella parvula HOM05D006097 ORTHO05D008538 2.8e-215 752.3 582 62.5
BolC4t25143H Brassica oleracea HOM05D006097 ORTHO05D008538 3.6e-215 751.9 600 61.7
Migut.N01845 Erythranthe guttata HOM05D006097 ORTHO05D008538 8.1e-215 750.7 579 64.1
CAN.G176.2 Capsicum annuum HOM05D006097 ORTHO05D008538 2.4e-214 749.2 578 63.1
Potri.003G196300 Populus trichocarpa HOM05D006097 ORTHO05D008538 9.0e-214 747.3 571 64.8
Nitab4.5_0001621g0010 Nicotiana tabacum HOM05D006097 ORTHO05D008538 3.4e-213 745.3 574 63.8
FAN01G0546 Fragaria x ananassa HOM05D006097 ORTHO05D008538 1.7e-212 743.0 569 65.4
SGA_v2.0_scaffold232G43504 Striga asiatica HOM05D006097 ORTHO05D008538 1.7e-212 743.0 581 63.2
ECA236G3136 Erigeron canadensis HOM05D006097 ORTHO05D008538 2.9e-212 742.3 536 65.1
AL5G37140 Arabidopsis lyrata HOM05D006097 ORTHO05D008538 6.4e-212 741.1 582 62.0
HanXRQChr04g0113861 Helianthus annuus HOM05D006097 ORTHO05D008538 1.4e-211 740.0 580 62.9
CsaV3_5G036770 Cucumis sativus L. HOM05D006097 ORTHO05D008538 1.0e-209 733.8 537 64.6
Aa31LG10G10820 Aethionema arabicum HOM05D006097 ORTHO05D008538 1.3e-209 733.4 583 61.1
Carub.0005s2263 Capsella rubella HOM05D006097 ORTHO05D008538 3.9e-209 731.9 582 60.8
Ah.12g062830 Amaranthus hybridus HOM05D006097 ORTHO05D008538 1.9e-208 729.6 534 65.0
SalBow6G4726 Salvia bowleyana HOM05D006097 ORTHO05D008538 1.9e-208 729.6 608 60.0
Sabra03G0146400 Salix brachista HOM05D006097 ORTHO05D008538 2.8e-207 725.7 613 60.0
ATR0745G019 Amborella trichopoda HOM05D006097 ORTHO05D008538 1.4e-206 723.4 571 62.3
FvH4_7g03070 Fragaria vesca HOM05D006097 ORTHO05D008538 2.4e-206 722.6 560 64.1
PGR031G1965 Punica granatum HOM05D006097 ORTHO05D008538 4.0e-206 721.8 581 61.8
Aqoxy2G00367 Aquilegia oxysepala HOM05D006097 ORTHO05D008538 6.9e-206 721.1 514 67.7
AUR62032650 Chenopodium quinoa HOM05D006097 ORTHO05D008538 2.6e-205 719.2 578 61.1
Lsat_1_v5_gn_7_31901 Lactuca sativa HOM05D006097 ORTHO05D004880 2.6e-205 719.2 537 63.7
arahy.Tifrunner.gnm1.ann1.RMFD7W Arachis hypogaea HOM05D006097 ORTHO05D008538 6.4e-204 714.5 609 62.7
CSS0004732 Camellia sinensis var. sinensis HOM05D006097 ORTHO05D008538 1.3e-201 706.8 580 62.6
CARHR165960 Cardamine hirsuta HOM05D006097 ORTHO05D008538 5.1e-201 704.9 586 59.4
Cc02_g30220 Coffea canephora HOM05D006097 ORTHO05D008538 1.1e-200 703.7 586 60.1
AUR62026861 Chenopodium quinoa HOM05D006097 ORTHO05D008538 1.0e-196 690.6 568 60.2
EL10Ac2g02801 Beta vulgaris HOM05D006097 ORTHO05D008538 3.8e-196 688.7 660 54.1
ClCG05G026810 Citrullus lanatus HOM05D006097 ORTHO05D008538 1.4e-195 686.8 544 61.2
Os01g0952700 Oryza sativa ssp. japonica HOM05D006097 ORTHO05D008538 2.1e-194 682.9 563 58.3
Eucgr.G03235 Eucalyptus grandis HOM05D006097 ORTHO05D008538 3.5e-194 682.2 581 59.6
HPP92_013975 Vanilla planifolia HOM05D006097 ORTHO05D008538 5.9e-189 664.8 536 59.1
Hma1.2p1_1627F.1_g294440 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 2.2e-188 662.9 463 69.8
PGSC0003DMG400025223 Solanum tuberosum HOM05D006097 ORTHO05D008538 8.8e-185 651.0 460 67.0
Solyc08g014470.4 Solanum lycopersicum HOM05D006097 ORTHO05D008538 1.5e-184 650.2 460 67.0
SEGI_19069 Sequoiadendron giganteum HOM05D006097 ORTHO05D008538 7.4e-184 647.9 579 55.3
Sc07g0002170 Simmondsia chinensis HOM05D006097 ORTHO05D008538 4.5e-181 638.6 462 65.8
DCAR_031244 Daucus carota HOM05D006097 ORTHO05D008538 8.8e-177 624.4 460 65.7
QL04p017846 Quercus lobata HOM05D006097 ORTHO05D008538 2.7e-170 602.8 401 71.8
MELO3C012474.2 Cucumis melo HOM05D006097 ORTHO05D008538 8.8e-169 597.8 458 62.9
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 8.2e-167 591.3 537 58.3
Glyma.15G235400 Glycine max HOM05D006097 ORTHO05D008538 3.5e-165 585.9 519 60.5
MBI19_g07612_MAGBIO Magnolia biondii HOM05D006097 ORTHO05D008538 4.5e-165 585.5 527 57.3
AT3G55850 Arabidopsis thaliana HOM05D006097 ORTHO05D008538 7.7e-165 584.7 462 62.1
Hma1.2p1_1627F.1_g294450 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 3.2e-163 579.3 463 63.3
Sed0002543 Sechium edule HOM05D006097 ORTHO05D008538 2.1e-162 576.6 545 54.5
unitig_52.g17390 Utricularia gibba HOM05D006097 ORTHO05D008538 8.8e-161 571.2 511 57.9
Mapoly0021s0162 Marchantia polymorpha HOM05D006097 ORTHO05D008538 2.4e-158 563.1 534 50.9
Ca_26912_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 1.3e-156 557.4 296 89.9
SMO367G1089 Selaginella moellendorffii HOM05D006097 ORTHO05D008538 2.0e-152 543.5 567 48.0
AagrBONN_evm.TU.Sc2ySwM_340.253 Anthoceros agrestis HOM05D006097 ORTHO05D008538 2.8e-151 539.7 530 48.7
Pp3c20_1490 Physcomitrium patens HOM05D006097 ORTHO05D008538 1.8e-145 520.4 534 49.1
TAR623G0406 Trochodendron aralioides HOM05D006097 ORTHO05D008538 2.4e-142 510.0 351 70.1
AUR62037188 Chenopodium quinoa HOM05D006097 ORTHO05D008538 3.5e-133 479.6 395 60.0
Oeu048573.1 Olea europaea HOM05D006097 ORTHO05D008538 7.5e-128 461.8 361 63.2
VMungo1127G1698 Vigna mungo HOM05D006097 ORTHO05D008538 1.4e-126 457.6 270 83.3
CDE06G1230 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 1.1e-115 421.4 353 58.9
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 3.3e-107 393.3 536 42.7
Thhalv10010899m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 2.9e-103 380.2 314 58.0
vmacro12697 Vaccinium macrocarpon HOM05D006097 ORTHO05D008538 2.1e-101 374.0 267 67.8
Lj9A654G51 Lonicera japonica HOM05D006097 ORTHO05D008538 4.6e-93 346.3 237 68.8
SMO367G0062 Selaginella moellendorffii HOM05D006097 ORTHO05D005621 4.3e-91 339.7 549 38.6
FAN10G0529 Fragaria x ananassa HOM05D006097 ORTHO05D008538 6.5e-87 325.9 688 33.7
Zm00001eb140700 Zea mays HOM05D006097 ORTHO05D008538 9.3e-86 322.0 251 60.6
MCO06G284 Micromonas commoda HOM05D006097 ORTHO05D008538 6.0e-85 319.3 565 35.6
VMungo1127G1548 Vigna mungo HOM05D006097 ORTHO05D008538 1.2e-77 295.0 192 75.0
Cre06.g279350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 3.4e-72 276.9 465 37.4
SMO343G0029 Selaginella moellendorffii HOM05D004978 ORTHO05D005621 1.8e-68 264.6 516 35.9
TAR623G0702 Trochodendron aralioides HOM05D006097 ORTHO05D008538 2.2e-63 247.7 205 62.4
Pp3s32_630 Physcomitrium patens HOM05D006097 ORTHO05D008538 8.5e-55 219.2 521 30.9
Cre07.g313350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 4.7e-53 213.4 610 27.5
Lj9A654T55 Lonicera japonica HOM05D006097 ORTHO05D008538 8.0e-53 212.6 145 69.0
PRCOL_00006109 Prasinoderma coloniale HOM05D006097 ORTHO05D008538 2.2e-50 204.5 400 35.5
QL04p017840 Quercus lobata HOM05D006097 ORTHO05D008538 1.7e-47 194.9 123 74.8
Ca_03883_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 4.5e-40 170.2 97 85.6
CDE06G0927 Ceratophyllum demersum HOM05D006097 ORTHO05D020391 1.1e-25 122.5 143 46.9
Medtr1224s0010 Medicago truncatula HOM05D006097 ORTHO05D008538 2.0e-24 118.2 580 25.5
Nn2g16009 Nelumbo nucifera HOM05D006097 ORTHO05D008538 6.6e-23 113.2 82 62.2
CDE06G2151 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 4.0e-20 104.0 82 63.4
DCAR_031243 Daucus carota HOM05D006097 ORTHO05D020391 6.8e-20 103.2 120 47.5
SMO197G0087 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 8.9e-20 102.8 169 40.2
SMO274G0019 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 1.3e-18 99.0 111 48.6
SEGI_33421 Sequoiadendron giganteum HOM05D006097 ORTHO05D020391 1.7e-18 98.6 125 44.8
SMO212G0005 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 2.0e-16 91.7 115 44.3
SMO009G0029 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 3.5e-16 90.9 118 43.2
Carub.0002s2671 Capsella rubella HOM05D006097 ORTHO05D008538 6.0e-16 90.1 57 64.9
SMO125G0001 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 7.8e-16 89.7 114 43.9
SMO005G0015 Selaginella moellendorffii HOM05D006097 ORTHO05D011308 1.7e-15 88.6 105 42.9
RcHm_v2.0_Chr6g0254811 Rosa chinensis HOM05D006097 ORTHO05D020391 2.3e-12 78.2 57 63.2
CDE06G1678 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 7.1e-09 66.6 55 56.4
Nn313s46297 Nelumbo nucifera HOM05D006097 ORTHO05D008538 1.2e-08 65.9 45 68.9
BolC8t50740H Brassica oleracea HOM05D035890 ORTHO05D033370 3.3e-06 57.8 62 51.6
Hma1.2p1_0269F.1_g107740 Hydrangea macrophylla HOM05D006097 ORTHO05D020391 4.3e-06 57.4 38 68.4
Hma1.2p1_3244F.1_g334325 Hydrangea macrophylla HOM05D006097 ORTHO05D020391 4.3e-06 57.4 38 68.4
Haze_01792 Corylus avellana HOM05D000242 ORTHO05D000700 5.6e-06 57.0 35 77.1


User provided reference genes

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