Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 6.0e-45 183.7 88 100.0
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 3.1e-17 91.7 145 40.0
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 1.9e-14 82.4 142 38.0
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 3.2e-14 81.6 59 61.0
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 5.5e-14 80.9 48 75.0
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 7.2e-14 80.5 60 63.3
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 9.4e-14 80.1 58 65.5
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 1.2e-13 79.7 58 63.8
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 1.2e-13 79.7 143 38.5
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 1.6e-13 79.3 51 66.7
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 1.6e-13 79.3 49 69.4
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.1e-13 79.0 62 58.1
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 2.1e-13 79.0 60 61.7
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 2.1e-13 79.0 63 58.7
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 2.1e-13 79.0 53 67.9
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 2.1e-13 79.0 88 48.9
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.7e-13 78.6 60 61.7
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 2.7e-13 78.6 44 79.5
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 2.7e-13 78.6 48 70.8
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 2.7e-13 78.6 48 70.8
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 3.6e-13 78.2 48 72.9
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 3.6e-13 78.2 48 72.9
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 3.6e-13 78.2 53 66.0
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 3.6e-13 78.2 51 66.7
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 3.6e-13 78.2 51 66.7
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 4.6e-13 77.8 48 70.8
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 4.6e-13 77.8 48 72.9
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 4.6e-13 77.8 47 72.3
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 4.6e-13 77.8 44 79.5
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 6.1e-13 77.4 44 77.3
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 6.1e-13 77.4 44 77.3
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 6.1e-13 77.4 44 77.3
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 6.1e-13 77.4 44 77.3
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 6.1e-13 77.4 44 77.3
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 6.1e-13 77.4 44 77.3
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 6.1e-13 77.4 44 77.3
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 6.1e-13 77.4 44 77.3
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 6.1e-13 77.4 44 77.3
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 6.1e-13 77.4 45 73.3
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 6.1e-13 77.4 48 68.8
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 6.1e-13 77.4 48 72.9
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 7.9e-13 77.0 48 70.8
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 7.9e-13 77.0 48 66.7
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 7.9e-13 77.0 48 68.8
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 1.0e-12 76.6 48 70.8
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 1.0e-12 76.6 44 75.0
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 1.0e-12 76.6 44 75.0
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 1.0e-12 76.6 44 75.0
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 1.0e-12 76.6 44 77.3
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.0e-12 76.6 44 75.0
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.0e-12 76.6 44 75.0
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 1.0e-12 76.6 44 75.0
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 1.0e-12 76.6 44 77.3
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 1.0e-12 76.6 44 77.3
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 1.4e-12 76.3 48 70.8
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 1.4e-12 76.3 48 70.8
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 1.4e-12 76.3 42 81.0
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 1.4e-12 76.3 48 70.8
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 1.4e-12 76.3 42 81.0
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 1.4e-12 76.3 48 68.8
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 1.4e-12 76.3 48 70.8
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 1.4e-12 76.3 42 81.0
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 1.4e-12 76.3 44 75.0
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 1.8e-12 75.9 47 72.3
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.8e-12 75.9 45 75.6
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 1.8e-12 75.9 54 64.8
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.8e-12 75.9 45 71.1
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.8e-12 75.9 45 71.1
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.8e-12 75.9 45 71.1
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 1.8e-12 75.9 44 75.0
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 1.8e-12 75.9 44 75.0
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 1.8e-12 75.9 44 75.0
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 1.8e-12 75.9 44 75.0
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 2.3e-12 75.5 48 70.8
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 2.3e-12 75.5 42 81.0
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 2.3e-12 75.5 44 72.7
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.3e-12 75.5 44 75.0
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 2.3e-12 75.5 44 75.0
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.3e-12 75.5 53 67.9
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 2.3e-12 75.5 44 75.0
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 2.3e-12 75.5 51 64.7
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 3.0e-12 75.1 42 78.6
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 3.0e-12 75.1 42 78.6
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 3.0e-12 75.1 44 72.7
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 3.0e-12 75.1 44 72.7
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 3.0e-12 75.1 56 64.3
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 3.0e-12 75.1 48 68.8
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 3.0e-12 75.1 48 68.8
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 3.0e-12 75.1 42 78.6
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 3.0e-12 75.1 44 72.7
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.9e-12 74.7 42 81.0
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 3.9e-12 74.7 56 64.3
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 3.9e-12 74.7 42 81.0
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 3.9e-12 74.7 44 75.0
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 3.9e-12 74.7 48 68.8
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 5.1e-12 74.3 42 78.6
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 5.1e-12 74.3 42 78.6
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 5.1e-12 74.3 53 64.2
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 5.1e-12 74.3 45 71.1
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 5.1e-12 74.3 45 71.1
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 5.1e-12 74.3 48 66.7
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 6.7e-12 73.9 42 78.6
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 8.8e-12 73.6 41 80.5
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 8.8e-12 73.6 44 72.7
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 8.8e-12 73.6 41 80.5
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 8.8e-12 73.6 41 80.5
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 8.8e-12 73.6 42 76.2
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 8.8e-12 73.6 59 57.6
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 1.1e-11 73.2 44 72.7
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 1.1e-11 73.2 44 70.5
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 1.5e-11 72.8 46 69.6
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 2.0e-11 72.4 48 68.8
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 2.5e-11 72.0 44 70.5
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 3.3e-11 71.6 53 56.6
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 3.3e-11 71.6 44 72.7
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 3.3e-11 71.6 44 72.7
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.3e-11 71.2 63 57.1
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 4.3e-11 71.2 42 78.6
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 4.3e-11 71.2 42 73.8
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 4.3e-11 71.2 42 73.8
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 7.4e-11 70.5 42 78.6
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 7.4e-11 70.5 42 76.2
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 7.4e-11 70.5 41 78.0
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 9.7e-11 70.1 44 68.2
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 9.7e-11 70.1 56 57.1
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 9.7e-11 70.1 52 57.7
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 1.3e-10 69.7 55 60.0
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 1.3e-10 69.7 41 78.0
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 1.3e-10 69.7 41 78.0
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 1.3e-10 69.7 41 78.0
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 1.7e-10 69.3 41 70.7
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.7e-10 69.3 63 57.1
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 2.2e-10 68.9 49 61.2
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 2.2e-10 68.9 51 56.9
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 2.2e-10 68.9 44 70.5
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 2.8e-10 68.6 41 75.6
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 4.8e-10 67.8 41 75.6
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 6.3e-10 67.4 41 75.6
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 1.1e-09 66.6 57 56.1
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 1.4e-09 66.2 41 75.6
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 1.4e-09 66.2 41 75.6
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 2.4e-09 65.5 53 54.7
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 2.4e-09 65.5 53 54.7
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 3.1e-09 65.1 47 61.7
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 3.1e-09 65.1 47 61.7
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 3.1e-09 65.1 41 73.2
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 3.1e-09 65.1 41 73.2
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 5.3e-09 64.3 115 40.0
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 9.1e-09 63.5 50 58.0
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 2.6e-08 62.0 55 49.1
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.5e-08 61.2 56 53.6
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 1.1e-06 56.6 40 62.5
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 2.5e-06 55.5 55 43.6
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 4.2e-06 54.7 39 64.1


User provided reference genes

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