Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g438030 Medicago truncatula HOM05D002427 ORTHO05D002818 5.4e-89 330.9 157 100.0
Medtr3g097250 Medicago truncatula HOM05D002427 ORTHO05D002818 8.3e-21 104.4 55 87.3
TPR.G28700 Trifolium pratense HOM05D002427 ORTHO05D002818 8.3e-21 104.4 55 85.5
CANSAT54G0435 Cannabis sativa HOM05D002427 ORTHO05D002818 3.1e-20 102.4 55 81.8
Ca_17016_v3 Cicer arietinum L. HOM05D002427 ORTHO05D002818 9.1e-20 100.9 55 83.6
Lj1g0013321 Lotus japonicus HOM05D002427 ORTHO05D002818 9.1e-20 100.9 55 83.6
TAR381G0395 Trochodendron aralioides HOM05D002427 ORTHO05D002818 9.1e-20 100.9 55 83.6
Glyma.06G159400 Glycine max HOM05D002427 ORTHO05D002818 1.2e-19 100.5 55 83.6
Psat5g057760 Pisum sativum HOM05D002427 ORTHO05D002818 1.2e-19 100.5 54 83.3
VMungo1309G0797 Vigna mungo HOM05D002427 ORTHO05D002818 1.2e-19 100.5 55 83.6
Glyma.04G206300 Glycine max HOM05D002427 ORTHO05D002818 1.6e-19 100.1 55 81.8
MELO3C003261.2 Cucumis melo HOM05D002427 ORTHO05D002818 2.0e-19 99.8 55 81.8
CsaV3_4G029800 Cucumis sativus L. HOM05D002427 ORTHO05D002818 2.0e-19 99.8 55 81.8
Nn1g08924 Nelumbo nucifera HOM05D002427 ORTHO05D002818 2.7e-19 99.4 55 81.8
COL.COLO4_07358 Corchorus olitorius HOM05D002427 ORTHO05D002818 3.5e-19 99.0 55 80.0
Prupe.7G172400 Prunus persica HOM05D002427 ORTHO05D002818 3.5e-19 99.0 55 80.0
Sp6g34210 Schrenkiella parvula HOM05D002427 ORTHO05D002818 3.5e-19 99.0 55 80.0
TWI31G0626 Tripterygium wilfordii HOM05D002427 ORTHO05D002818 3.5e-19 99.0 55 81.8
Thhalv10012870m.g Eutrema salsugineum HOM05D002427 ORTHO05D002818 4.5e-19 98.6 55 80.0
Potri.001G305300 Populus trichocarpa HOM05D002427 ORTHO05D002818 4.5e-19 98.6 55 81.8
QL10p040252 Quercus lobata HOM05D002427 ORTHO05D002818 4.5e-19 98.6 55 81.8
QL10p040373 Quercus lobata HOM05D002427 ORTHO05D002818 4.5e-19 98.6 55 81.8
GSVIVG01022409001 Vitis vinifera HOM05D002427 ORTHO05D002818 4.5e-19 98.6 55 80.0
Cpa.g.sc37.74 Carica papaya HOM05D002427 ORTHO05D002818 5.9e-19 98.2 55 80.0
ClCG04G003120 Citrullus lanatus HOM05D002427 ORTHO05D002818 5.9e-19 98.2 55 81.8
Lalb_Chr08g0237811 Lupinus albus HOM05D002427 ORTHO05D002818 5.9e-19 98.2 55 81.8
Phvul.009G157100 Phaseolus vulgaris HOM05D002427 ORTHO05D002818 5.9e-19 98.2 55 81.8
arahy.Tifrunner.gnm1.ann1.A2RU10 Arachis hypogaea HOM05D002427 ORTHO05D002818 7.7e-19 97.8 55 80.0
arahy.Tifrunner.gnm1.ann1.GNX9M7 Arachis hypogaea HOM05D002427 ORTHO05D002818 7.7e-19 97.8 55 80.0
BcaC03g13236 Brassica carinata HOM05D002427 ORTHO05D002818 7.7e-19 97.8 55 80.0
CDE08G1546 Ceratophyllum demersum HOM05D002427 ORTHO05D002818 7.7e-19 97.8 55 81.8
PSO017G6250 Papaver somniferum HOM05D002427 ORTHO05D002818 7.7e-19 97.8 55 78.2
PSO170G1031 Papaver somniferum HOM05D002427 ORTHO05D002818 7.7e-19 97.8 55 78.2
Cfa002224 Carpinus fangiana HOM05D002427 ORTHO05D002818 1.0e-18 97.4 55 80.0
Ciclev10025061m.g Citrus clementina HOM05D002427 ORTHO05D002818 1.0e-18 97.4 55 81.8
Gohir.D04G040100 Gossypium hirsutum HOM05D002427 ORTHO05D002818 1.0e-18 97.4 55 80.0
Gorai.012G045200 Gossypium raimondii HOM05D002427 ORTHO05D002818 1.0e-18 97.4 55 80.0
Manes.13G078601 Manihot esculenta HOM05D002427 ORTHO05D002818 1.0e-18 97.4 55 78.2
HPP92_024255 Vanilla planifolia HOM05D002427 ORTHO05D002818 1.0e-18 97.4 55 80.0
HPP92_024266 Vanilla planifolia HOM05D002427 ORTHO05D002818 1.0e-18 97.4 55 80.0
C02p03680 Brassica napus HOM05D002427 ORTHO05D002818 1.3e-18 97.1 52 84.6
BolC2t06327H Brassica oleracea HOM05D002427 ORTHO05D002818 1.3e-18 97.1 52 84.6
BraA02t04962Z Brassica rapa HOM05D002427 ORTHO05D002818 1.3e-18 97.1 52 84.6
Lsat_1_v5_gn_1_80721 Lactuca sativa HOM05D002427 ORTHO05D002818 1.3e-18 97.1 55 80.0
SGA_v2.0_scaffold30G12357 Striga asiatica HOM05D002427 ORTHO05D002818 1.3e-18 97.1 56 78.6
MD02G1127200 Malus domestica HOM05D002427 ORTHO05D002818 1.7e-18 96.7 55 76.4
Peaxi162Scf01286g00123 Petunia axillaris HOM05D002427 ORTHO05D002818 1.7e-18 96.7 56 82.1
Sabra16G0191600 Salix brachista HOM05D002427 ORTHO05D002818 1.7e-18 96.7 55 78.2
CSS0047928 Camellia sinensis var. sinensis HOM05D002427 ORTHO05D002818 2.3e-18 96.3 55 78.2
Thecc.01G238700 Theobroma cacao HOM05D002427 ORTHO05D002818 2.3e-18 96.3 55 78.2
CiPaw.03G254700 Carya illinoinensis HOM05D002427 ORTHO05D002818 2.9e-18 95.9 55 78.2
Oeu011019.1 Olea europaea HOM05D002427 ORTHO05D002818 2.9e-18 95.9 55 78.2
AL6G19380 Arabidopsis lyrata HOM05D002427 ORTHO05D002818 3.8e-18 95.5 55 74.5
AT5G08650 Arabidopsis thaliana HOM05D002427 ORTHO05D002818 3.8e-18 95.5 55 74.5
Carub.0006s0764 Capsella rubella HOM05D002427 ORTHO05D002818 3.8e-18 95.5 55 74.5
Aa31LG3G17890 Aethionema arabicum HOM05D002427 ORTHO05D002818 5.0e-18 95.1 55 76.4
Ah.06g191700 Amaranthus hybridus HOM05D002427 ORTHO05D002818 5.0e-18 95.1 55 76.4
ATR0684G052 Amborella trichopoda HOM05D002427 ORTHO05D002818 5.0e-18 95.1 55 78.2
CARHR204330 Cardamine hirsuta HOM05D002427 ORTHO05D002818 5.0e-18 95.1 55 74.5
FvH4_1g11350 Fragaria vesca HOM05D002427 ORTHO05D002818 5.0e-18 95.1 55 76.4
FAN28G1337 Fragaria x ananassa HOM05D002427 ORTHO05D002818 5.0e-18 95.1 55 76.4
RcHm_v2.0_Chr2g0098891 Rosa chinensis HOM05D002427 ORTHO05D002818 5.0e-18 95.1 55 76.4
Aqoxy5G02414 Aquilegia oxysepala HOM05D002427 ORTHO05D002818 6.5e-18 94.7 55 78.2
CDE02G4430 Ceratophyllum demersum HOM05D002427 ORTHO05D002818 6.5e-18 94.7 55 80.0
Dinv05907 Davidia involucrata HOM05D002427 ORTHO05D002818 6.5e-18 94.7 55 76.4
Eucgr.L00739 Eucalyptus grandis HOM05D002427 ORTHO05D002818 6.5e-18 94.7 55 76.4
HanXRQChr11g0343541 Helianthus annuus HOM05D002427 ORTHO05D002818 6.5e-18 94.7 55 76.4
Sed0011884 Sechium edule HOM05D002427 ORTHO05D002818 6.5e-18 94.7 55 76.4
ECA248G0559 Erigeron canadensis HOM05D002427 ORTHO05D002818 8.6e-18 94.4 55 76.4
Glyma.04G168800 Glycine max HOM05D002427 ORTHO05D002818 8.6e-18 94.4 54 79.6
AagrBONN_evm.TU.Sc2ySwM_344.3392 Anthoceros agrestis HOM05D002427 ORTHO05D002818 1.1e-17 94.0 55 74.5
Cc07_g20240 Coffea canephora HOM05D002427 ORTHO05D002818 1.1e-17 94.0 55 76.4
Duzib147G0870 Durio zibethinus HOM05D002427 ORTHO05D002818 1.1e-17 94.0 55 76.4
SalBow5G1238 Salvia bowleyana HOM05D002427 ORTHO05D002818 1.1e-17 94.0 55 76.4
Sc09g0004380 Simmondsia chinensis HOM05D002427 ORTHO05D002818 1.1e-17 94.0 55 78.2
unitig_37.g12358 Utricularia gibba HOM05D002427 ORTHO05D002818 1.1e-17 94.0 58 72.4
MSTRG.15260 Avicennia marina HOM05D002427 ORTHO05D002818 1.5e-17 93.6 55 74.5
DCAR_012727 Daucus carota HOM05D002427 ORTHO05D002818 1.5e-17 93.6 55 76.4
THA.LOC104818410 Tarenaya hassleriana HOM05D002427 ORTHO05D002818 1.5e-17 93.6 55 78.2
Lj4A817T44 Lonicera japonica HOM05D002427 ORTHO05D002818 1.9e-17 93.2 55 74.5
Hund06883 Selenicereus undatus HOM05D002427 ORTHO05D002818 1.9e-17 93.2 52 80.8
vmacro18681 Vaccinium macrocarpon HOM05D002427 ORTHO05D002818 1.9e-17 93.2 55 74.5
CAN.G676.46 Capsicum annuum HOM05D002427 ORTHO05D002818 2.5e-17 92.8 55 76.4
AUR62039045 Chenopodium quinoa HOM05D002427 ORTHO05D002818 2.5e-17 92.8 55 74.5
Nitab4.5_0000147g0070 Nicotiana tabacum HOM05D002427 ORTHO05D002818 2.5e-17 92.8 55 76.4
Nitab4.5_0001663g0160 Nicotiana tabacum HOM05D002427 ORTHO05D002818 2.5e-17 92.8 55 76.4
Solyc04g015450.3 Solanum lycopersicum HOM05D002427 ORTHO05D002818 2.5e-17 92.8 55 76.4
Sopen04g007500 Solanum pennellii HOM05D002427 ORTHO05D002818 2.5e-17 92.8 55 76.4
PGSC0003DMG400027268 Solanum tuberosum HOM05D002427 ORTHO05D002818 2.5e-17 92.8 55 76.4
Zm00001eb207820 Zea mays HOM05D002427 ORTHO05D002818 2.5e-17 92.8 55 76.4
EL10Ac4g08949 Beta vulgaris HOM05D002427 ORTHO05D002818 3.3e-17 92.4 55 74.5
Actinidia16534 Actinidia chinensis HOM05D002427 ORTHO05D002818 4.2e-17 92.0 55 74.5
AUR62004792 Chenopodium quinoa HOM05D002427 ORTHO05D002818 4.2e-17 92.0 55 72.7
SMO347G0398 Selaginella moellendorffii HOM05D002427 ORTHO05D002818 4.2e-17 92.0 55 74.5
Mapoly0067s0096 Marchantia polymorpha HOM05D002427 ORTHO05D002818 7.2e-17 91.3 55 76.4
CBR_g41196 Chara braunii HOM05D002427 ORTHO05D002818 1.2e-16 90.5 55 76.4
Rhsim08G0000900 Rhododendron simsii HOM05D002427 ORTHO05D002818 2.1e-16 89.7 55 70.9
Atru.chr4.1181 Acer truncatum HOM05D002427 ORTHO05D002818 3.6e-16 89.0 55 74.5
Migut.L00555 Erythranthe guttata HOM05D002427 ORTHO05D002818 3.6e-16 89.0 49 81.6
Pp3c26_13410 Physcomitrium patens HOM05D002427 ORTHO05D002818 1.0e-15 87.4 55 74.5
PGR102G2135 Punica granatum HOM05D002427 ORTHO05D002818 1.4e-15 87.0 47 83.0
MBI03_g40054_MAGBIO Magnolia biondii HOM05D002427 ORTHO05D002818 2.3e-15 86.3 48 81.2
Haze_25401 Corylus avellana HOM05D002427 ORTHO05D002818 5.2e-15 85.1 53 75.5
SEGI_15043 Sequoiadendron giganteum HOM05D002427 ORTHO05D002818 2.6e-14 82.8 52 71.2
Glyma.04G168701 Glycine max HOM05D002427 ORTHO05D002818 8.3e-13 77.8 49 75.5
PRCOL_00004188 Prasinoderma coloniale HOM05D002427 ORTHO05D002818 1.1e-12 77.4 55 63.6
MCO14G556 Micromonas commoda HOM05D002427 ORTHO05D002818 1.6e-11 73.6 55 60.0
Cre03.g165000 Chlamydomonas reinhardtii HOM05D002427 ORTHO05D002818 1.0e-10 70.9 54 55.6
Haze_26552 Corylus avellana HOM05D002427 ORTHO05D002818 1.3e-10 70.5 51 56.9
Potri.017G079800 Populus trichocarpa HOM05D002427 ORTHO05D002818 2.6e-06 56.2 53 49.1


User provided reference genes

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