Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g103160 Medicago truncatula HOM05D006505 ORTHO05D008086 1.2e-132 476.5 239 100.0
Medtr6g004800 Medicago truncatula HOM05D006505 ORTHO05D008086 4.8e-113 411.4 239 88.3
Psat5g300640 Pisum sativum HOM05D006505 ORTHO05D008086 3.2e-109 398.7 241 83.8
TPR.G33266 Trifolium pratense HOM05D006505 ORTHO05D008086 7.7e-103 377.5 240 81.2
Ca_04162_v3 Cicer arietinum L. HOM05D006505 ORTHO05D008086 1.1e-101 373.6 242 80.6
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 2.2e-94 349.4 239 74.9
Lalb_Chr03g0033021 Lupinus albus HOM05D006505 ORTHO05D008086 1.9e-77 293.1 267 62.5
Lj2g0010245 Lotus japonicus HOM05D006505 ORTHO05D008086 6.0e-71 271.6 334 50.6
Glyma.09G152000 Glycine max HOM05D006505 ORTHO05D008086 2.0e-63 246.5 165 76.4
Phvul.004G125700 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 3.0e-62 242.7 179 72.1
Glyma.16G202700 Glycine max HOM05D006505 ORTHO05D008086 1.1e-61 240.7 187 67.9
VMungo0464G0461 Vigna mungo HOM05D006505 ORTHO05D008086 2.1e-60 236.5 306 50.3
Phvul.007G023100 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 3.6e-60 235.7 176 72.7
Cfa016168 Carpinus fangiana HOM05D006505 ORTHO05D008086 1.5e-58 230.3 207 60.4
arahy.Tifrunner.gnm1.ann1.VH9XRT Arachis hypogaea HOM05D006505 ORTHO05D008086 4.4e-58 228.8 316 47.5
QL09p007239 Quercus lobata HOM05D006505 ORTHO05D008086 5.8e-58 228.4 214 57.0
arahy.Tifrunner.gnm1.ann1.P5KSQZ Arachis hypogaea HOM05D006505 ORTHO05D008086 1.3e-57 227.3 316 47.5
Haze_00287 Corylus avellana HOM05D006505 ORTHO05D008086 3.7e-57 225.7 187 62.6
arahy.Tifrunner.gnm1.ann1.XVHH14 Arachis hypogaea HOM05D006505 ORTHO05D008086 8.3e-57 224.6 171 67.3
Eucgr.D02590 Eucalyptus grandis HOM05D006505 ORTHO05D008086 7.8e-55 218.0 175 64.6
CSS0001335 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 2.3e-54 216.5 172 64.5
CSS0032447 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 2.3e-54 216.5 172 64.5
CSS0043282 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 3.0e-54 216.1 172 64.5
CSS0016706 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 5.1e-54 215.3 172 64.5
CSS0048860 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 5.1e-54 215.3 172 64.5
Nitab4.5_0013752g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 2.5e-53 213.0 220 52.7
Nitab4.5_0000030g0150 Nicotiana tabacum HOM05D006505 ORTHO05D008086 4.3e-53 212.2 246 50.0
CiPaw.05G198000 Carya illinoinensis HOM05D006505 ORTHO05D008086 1.2e-52 210.7 209 56.5
CANSAT01G1182 Cannabis sativa HOM05D006505 ORTHO05D008086 2.1e-52 209.9 150 68.0
Rhsim11G0024600 Rhododendron simsii HOM05D006505 ORTHO05D008086 3.6e-52 209.1 212 55.2
Nitab4.5_0000009g0140 Nicotiana tabacum HOM05D006505 ORTHO05D008086 4.7e-52 208.8 221 52.9
Nitab4.5_0002941g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 6.2e-52 208.4 228 51.8
MD10G1029200 Malus domestica HOM05D006505 ORTHO05D008086 1.4e-51 207.2 172 61.0
Ciclev10016360m.g Citrus clementina HOM05D006505 ORTHO05D008086 2.4e-51 206.5 190 58.9
Prupe.8G075800 Prunus persica HOM05D006505 ORTHO05D008086 1.5e-50 203.8 171 59.6
ClCG10G009230 Citrullus lanatus HOM05D006505 ORTHO05D008086 2.6e-50 203.0 204 53.4
Atru.chr5.2699 Acer truncatum HOM05D006505 ORTHO05D008086 3.4e-50 202.6 152 67.1
Lj9C390T7 Lonicera japonica HOM05D006505 ORTHO05D008086 3.4e-50 202.6 196 54.6
Thecc.05G317100 Theobroma cacao HOM05D006505 ORTHO05D008086 9.9e-50 201.1 161 63.4
CAN.G900.13 Capsicum annuum HOM05D006505 ORTHO05D008086 2.2e-49 199.9 169 60.4
Sopen08g024370 Solanum pennellii HOM05D006505 ORTHO05D008086 2.9e-49 199.5 216 53.2
PGSC0003DMG400030869 Solanum tuberosum HOM05D006505 ORTHO05D008086 2.9e-49 199.5 216 53.2
MD05G1028600 Malus domestica HOM05D006505 ORTHO05D008086 6.4e-49 198.4 205 52.7
Sc03g0004060 Simmondsia chinensis HOM05D006505 ORTHO05D008086 6.4e-49 198.4 184 57.1
Hund04368 Selenicereus undatus HOM05D000185 ORTHO05D008086 8.4e-49 198.0 159 61.6
RcHm_v2.0_Chr7g0213441 Rosa chinensis HOM05D006505 ORTHO05D008086 1.1e-48 197.6 160 61.9
Solyc08g075720.3 Solanum lycopersicum HOM05D006505 ORTHO05D008086 1.1e-48 197.6 159 62.3
MELO3C019016.2 Cucumis melo HOM05D006505 ORTHO05D008086 1.4e-48 197.2 205 54.1
Hund04411 Selenicereus undatus HOM05D006505 ORTHO05D008086 3.2e-48 196.1 159 61.0
CsaV3_4G009410 Cucumis sativus L. HOM05D006505 ORTHO05D008086 4.1e-48 195.7 159 62.3
PGR031G3837 Punica granatum HOM05D006505 ORTHO05D008086 4.1e-48 195.7 185 55.7
Duzib177G0740 Durio zibethinus HOM05D006505 ORTHO05D008086 5.4e-48 195.3 157 62.4
TWI56G0195 Tripterygium wilfordii HOM05D006505 ORTHO05D008086 5.4e-48 195.3 145 65.5
Sp1g27520 Schrenkiella parvula HOM05D006505 ORTHO05D008086 1.6e-47 193.7 161 59.0
THA.LOC104798517 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 1.6e-47 193.7 211 51.7
A09p34510 Brassica napus HOM05D006505 ORTHO05D008086 2.7e-47 193.0 168 56.0
BraA09t38992Z Brassica rapa HOM05D006505 ORTHO05D008086 2.7e-47 193.0 168 56.0
Oeu059435.1 Olea europaea HOM05D006505 ORTHO05D008086 2.7e-47 193.0 172 57.0
Thhalv10008153m.g Eutrema salsugineum HOM05D006505 ORTHO05D008086 4.6e-47 192.2 161 59.0
BcaC05g27199 Brassica carinata HOM05D006505 ORTHO05D008086 6.0e-47 191.8 168 55.4
C05p31050 Brassica napus HOM05D006505 ORTHO05D008086 6.0e-47 191.8 168 55.4
BolC5t31830H Brassica oleracea HOM05D006505 ORTHO05D008086 6.0e-47 191.8 168 55.4
BcaB07g32834 Brassica carinata HOM05D006505 ORTHO05D008086 1.0e-46 191.0 171 54.4
Carub.0001s3014 Capsella rubella HOM05D006505 ORTHO05D008086 1.0e-46 191.0 185 52.4
COL.COLO4_03796 Corchorus olitorius HOM05D006505 ORTHO05D008086 1.0e-46 191.0 213 50.7
Manes.13G075298 Manihot esculenta HOM05D006505 ORTHO05D008086 1.3e-46 190.7 211 51.7
vmacro00059 Vaccinium macrocarpon HOM05D006505 ORTHO05D008086 3.0e-46 189.5 147 63.9
AT1G31817 Arabidopsis thaliana HOM05D006505 ORTHO05D008086 3.9e-46 189.1 169 53.8
AL5G22520 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 5.1e-46 188.7 205 49.3
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 5.1e-46 188.7 178 55.1
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 5.1e-46 188.7 192 52.6
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 5.1e-46 188.7 192 52.6
Aa31LG2G14220 Aethionema arabicum HOM05D006505 ORTHO05D008086 1.1e-45 187.6 159 62.3
THA.LOC104798644 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 1.5e-45 187.2 218 50.0
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 1.9e-45 186.8 179 54.7
AUR62014209 Chenopodium quinoa HOM05D006505 ORTHO05D008086 3.3e-45 186.0 157 59.9
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 5.6e-45 185.3 189 52.4
Manes.09G083900 Manihot esculenta HOM05D006505 ORTHO05D008086 1.2e-44 184.1 194 53.6
Sed0012178 Sechium edule HOM05D006505 ORTHO05D008086 1.2e-44 184.1 120 72.5
Cc11_g05460 Coffea canephora HOM05D006505 ORTHO05D008086 1.6e-44 183.7 156 62.2
AUR62038510 Chenopodium quinoa HOM05D006505 ORTHO05D008086 3.6e-44 182.6 178 53.9
Lsat_1_v5_gn_3_68661 Lactuca sativa HOM05D006505 ORTHO05D008086 1.8e-43 180.3 126 69.0
Lsat_1_v5_gn_5_56361 Lactuca sativa HOM05D006505 ORTHO05D008086 1.5e-42 177.2 126 68.3
CARHR031150 Cardamine hirsuta HOM05D006505 ORTHO05D008086 7.6e-42 174.9 240 41.2
HanXRQChr10g0282371 Helianthus annuus HOM05D006505 ORTHO05D008086 2.9e-41 172.9 164 54.9
MSTRG.25731 Avicennia marina HOM05D006505 ORTHO05D008086 3.8e-41 172.6 172 51.7
AL1G45900 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 1.9e-40 170.2 160 51.9
Gohir.D08G224600 Gossypium hirsutum HOM05D006505 ORTHO05D008086 1.9e-40 170.2 158 54.4
Gohir.A08G207900 Gossypium hirsutum HOM05D006505 ORTHO05D008086 7.1e-40 168.3 158 53.8
Gorai.004G238500 Gossypium raimondii HOM05D006505 ORTHO05D008086 9.3e-40 167.9 158 53.8
Potri.007G117700 Populus trichocarpa HOM05D006505 ORTHO05D008086 3.5e-39 166.0 160 57.5
Migut.A00568 Erythranthe guttata HOM05D006505 ORTHO05D008086 6.0e-39 165.2 154 57.1
Peaxi162Scf00193g00002 Petunia axillaris HOM05D006505 ORTHO05D008086 1.0e-38 164.5 150 56.7
Ah.03g147810 Amaranthus hybridus HOM05D006505 ORTHO05D008086 2.3e-38 163.3 158 52.5
SGA_v2.0_scaffold89G27392 Striga asiatica HOM05D006505 ORTHO05D008086 1.5e-37 160.6 185 48.1
Nn1g10029 Nelumbo nucifera HOM05D006505 ORTHO05D008086 7.3e-37 158.3 183 47.0
Nn1g10155 Nelumbo nucifera HOM05D006505 ORTHO05D008086 7.3e-37 158.3 183 47.0
unitig_0.g2835 Utricularia gibba HOM05D006505 ORTHO05D008086 3.6e-36 156.0 153 52.9
SalBow4G2740 Salvia bowleyana HOM05D006505 ORTHO05D008086 6.2e-36 155.2 180 47.2
BcaB03g13787 Brassica carinata HOM05D006505 ORTHO05D008086 4.5e-34 149.1 146 53.4
GSVIVG01031638001 Vitis vinifera HOM05D006505 ORTHO05D008086 4.5e-34 149.1 160 48.8
Actinidia01261 Actinidia chinensis HOM05D006505 ORTHO05D008086 9.9e-34 147.9 171 49.7
Aqoxy1G02002 Aquilegia oxysepala HOM05D006505 ORTHO05D008086 8.4e-33 144.8 129 61.2
Os03g0385900 Oryza sativa ssp. japonica HOM05D006505 ORTHO05D008086 8.4e-33 144.8 123 59.3
Cpa.g.sc48.17 Carica papaya HOM05D006505 ORTHO05D008086 2.4e-32 143.3 170 48.8
C05p39630 Brassica napus HOM05D006505 ORTHO05D008086 9.3e-32 141.4 102 62.7
Zm00001eb342930 Zea mays HOM05D006505 ORTHO05D008086 1.6e-31 140.6 240 40.8
BolC5t32703H Brassica oleracea HOM05D006505 ORTHO05D008086 4.6e-31 139.0 104 62.5
ECA240G0490 Erigeron canadensis HOM05D006505 ORTHO05D008086 1.8e-30 137.1 110 63.6
SGA_v2.0_scaffold96G29075 Striga asiatica HOM05D006505 ORTHO05D008086 6.7e-30 135.2 141 53.9
BcaC05g27958 Brassica carinata HOM05D004130 ORTHO05D004705 1.9e-24 117.1 80 63.8
Rhsim11G0030300 Rhododendron simsii HOM05D001695 ORTHO05D008931 5.5e-24 115.5 96 59.4
CDE02G2054 Ceratophyllum demersum HOM05D006505 ORTHO05D008086 1.2e-23 114.4 92 62.0
Nn1g10037 Nelumbo nucifera HOM05D006505 ORTHO05D008086 1.3e-22 110.9 95 56.8
Rhsim01G0291600 Rhododendron simsii HOM05D006505 ORTHO05D008086 1.3e-22 110.9 124 53.2
Dinv41818 Davidia involucrata HOM05D001955 ORTHO05D001917 1.5e-21 107.5 187 40.1
TAR636G3390 Trochodendron aralioides HOM05D006505 ORTHO05D008086 7.9e-15 85.1 104 46.2
CAN.G601.5 Capsicum annuum HOM05D006505 ORTHO05D008086 1.0e-14 84.7 91 49.5
Actinidia32777 Actinidia chinensis HOM05D006505 ORTHO05D008086 1.3e-14 84.3 104 47.1
MBI05_g23315_MAGBIO Magnolia biondii HOM05D006505 ORTHO05D008086 3.9e-14 82.8 69 53.6
Sed0026211 Sechium edule HOM05D006505 ORTHO05D008086 1.4e-11 74.3 100 47.0
AagrBONN_evm.TU.Sc2ySwM_340.30 Anthoceros agrestis HOM05D000964 ORTHO05D003870 1.3e-09 67.8 119 35.3
A05p25490 Brassica napus HOM05D006505 ORTHO05D008086 1.3e-09 67.8 45 62.2
PSO339G5687 Papaver somniferum HOM05D006505 ORTHO05D008086 1.4e-08 64.3 63 46.0
PSO384G0602 Papaver somniferum HOM05D006505 ORTHO05D008086 1.4e-08 64.3 63 46.0
PSO648G0043 Papaver somniferum HOM05D006505 ORTHO05D008086 1.9e-08 63.9 63 46.0
PSO339G1081 Papaver somniferum HOM05D006505 ORTHO05D008086 2.5e-08 63.5 63 46.0
Cre06.g288400 Chlamydomonas reinhardtii HOM05D000964 ORTHO05D003870 7.9e-07 58.5 120 35.8
Cfa018462 Carpinus fangiana HOM05D000964 ORTHO05D003870 1.4e-06 57.8 120 34.2
PSO832G3634 Papaver somniferum HOM05D000964 ORTHO05D003870 1.4e-06 57.8 120 35.0


User provided reference genes

Program Settings