Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g101770 Medicago truncatula HOM05D006064 ORTHO05D007619 5.5e-78 294.3 152 100.0
Ca_01132_v3 Cicer arietinum L. HOM05D006064 ORTHO05D007619 1.1e-54 216.9 150 78.0
TPR.G37258 Trifolium pratense HOM05D006064 ORTHO05D007619 1.0e-52 210.3 151 76.2
Lalb_Chr22g0351371 Lupinus albus HOM05D006064 ORTHO05D007619 8.8e-44 180.6 147 66.0
Lj3g0008796 Lotus japonicus HOM05D006064 ORTHO05D007619 6.3e-42 174.5 144 65.3
Gorai.011G074400 Gossypium raimondii HOM05D006064 ORTHO05D007619 3.1e-41 172.2 137 65.0
Gohir.D10G070100 Gossypium hirsutum HOM05D006064 ORTHO05D007619 7.0e-41 171.0 137 65.0
Thecc.06G092400 Theobroma cacao HOM05D006064 ORTHO05D007619 3.5e-40 168.7 142 62.0
Manes.04G130000 Manihot esculenta HOM05D006064 ORTHO05D007619 5.9e-40 167.9 147 63.3
CANSAT56G1509 Cannabis sativa HOM05D006064 ORTHO05D007619 2.2e-39 166.0 156 60.3
Duzib235G0379 Durio zibethinus HOM05D006064 ORTHO05D007619 2.9e-39 165.6 140 63.6
PGR102G3343 Punica granatum HOM05D006064 ORTHO05D007619 2.9e-39 165.6 153 62.7
QL05p021654 Quercus lobata HOM05D006064 ORTHO05D007619 3.8e-39 165.2 151 61.6
GSVIVG01017072001 Vitis vinifera HOM05D006064 ORTHO05D007619 3.8e-39 165.2 138 63.8
arahy.Tifrunner.gnm1.ann1.MEX591 Arachis hypogaea HOM05D006064 ORTHO05D007619 5.0e-39 164.9 148 60.8
Phvul.005G168800 Phaseolus vulgaris HOM05D006064 ORTHO05D007619 8.5e-39 164.1 148 62.2
Potri.001G184000 Populus trichocarpa HOM05D006064 ORTHO05D007619 1.1e-38 163.7 147 63.3
Duzib160G0510 Durio zibethinus HOM05D006064 ORTHO05D007619 1.5e-38 163.3 142 62.0
Gohir.D05G131300 Gossypium hirsutum HOM05D006064 ORTHO05D007619 1.5e-38 163.3 143 62.2
Gorai.009G135000 Gossypium raimondii HOM05D006064 ORTHO05D007619 1.5e-38 163.3 143 62.2
Sabra01G0155400 Salix brachista HOM05D006064 ORTHO05D007619 1.5e-38 163.3 141 66.7
CiPaw.02G148800 Carya illinoinensis HOM05D006064 ORTHO05D007619 1.9e-38 162.9 153 62.7
Gohir.A05G131800 Gossypium hirsutum HOM05D006064 ORTHO05D007619 1.9e-38 162.9 143 62.2
Glyma.15G016400 Glycine max HOM05D006064 ORTHO05D007619 5.5e-38 161.4 147 59.2
Haze_16361 Corylus avellana HOM05D006064 ORTHO05D007619 1.2e-37 160.2 154 61.0
MELO3C024255.2 Cucumis melo HOM05D006064 ORTHO05D007619 1.2e-37 160.2 156 58.3
Glyma.13G357200 Glycine max HOM05D006064 ORTHO05D007619 1.2e-37 160.2 145 60.0
PGSC0003DMG400002547 Solanum tuberosum HOM05D006064 ORTHO05D007619 1.2e-37 160.2 139 62.6
CsaV3_7G033420 Cucumis sativus L. HOM05D006064 ORTHO05D007619 1.6e-37 159.8 156 58.3
FAN09G1878 Fragaria x ananassa HOM05D006064 ORTHO05D007619 1.6e-37 159.8 140 62.1
Prupe.3G067300 Prunus persica HOM05D006064 ORTHO05D007619 2.7e-37 159.1 148 60.8
BcaB07g30746 Brassica carinata HOM05D006064 ORTHO05D007619 3.6e-37 158.7 149 59.1
VMungo1080G0744 Vigna mungo HOM05D006064 ORTHO05D007619 3.6e-37 158.7 133 64.7
THA.LOC104800422 Tarenaya hassleriana HOM05D006064 ORTHO05D007619 6.1e-37 157.9 142 59.9
Ah.01g021630 Amaranthus hybridus HOM05D006064 ORTHO05D007619 8.0e-37 157.5 147 61.9
Dinv38021 Davidia involucrata HOM05D006064 ORTHO05D007619 8.0e-37 157.5 139 61.2
Solyc03g120630.4 Solanum lycopersicum HOM05D006064 ORTHO05D007619 8.0e-37 157.5 139 61.2
Cfa002095 Carpinus fangiana HOM05D006064 ORTHO05D007619 1.0e-36 157.1 154 60.4
BolC9t55875H Brassica oleracea HOM05D006064 ORTHO05D007619 1.4e-36 156.8 144 59.7
ClCG09G001940 Citrullus lanatus HOM05D006064 ORTHO05D007619 1.4e-36 156.8 157 56.7
A09p23360 Brassica napus HOM05D006064 ORTHO05D007619 1.8e-36 156.4 144 59.7
BraA09t37937Z Brassica rapa HOM05D006064 ORTHO05D007619 1.8e-36 156.4 144 59.7
Cc04_g03040 Coffea canephora HOM05D006064 ORTHO05D007619 1.8e-36 156.4 154 60.4
AL2G41710 Arabidopsis lyrata HOM05D006064 ORTHO05D007619 2.3e-36 156.0 135 63.0
Hma1.2p1_1195F.1_g265790 Hydrangea macrophylla HOM05D006064 ORTHO05D007619 2.3e-36 156.0 138 60.9
Hma1.2p1_3147F.1_g333156 Hydrangea macrophylla HOM05D006064 ORTHO05D007619 2.3e-36 156.0 138 60.9
Sed0002776 Sechium edule HOM05D006064 ORTHO05D007619 3.0e-36 155.6 156 58.3
Aa31LG4G130 Aethionema arabicum HOM05D006064 ORTHO05D007619 5.2e-36 154.8 136 60.3
BcaC04g21589 Brassica carinata HOM05D006064 ORTHO05D007619 5.2e-36 154.8 144 59.0
CSS0016455 Camellia sinensis var. sinensis HOM05D006064 ORTHO05D007619 5.2e-36 154.8 151 58.3
FvH4_6g31770 Fragaria vesca HOM05D006064 ORTHO05D007619 5.2e-36 154.8 141 61.0
FAN02G0676 Fragaria x ananassa HOM05D006064 ORTHO05D007619 6.7e-36 154.5 141 61.0
Ciclev10026679m.g Citrus clementina HOM05D006064 ORTHO05D007619 8.8e-36 154.1 144 61.1
TAR383G1034 Trochodendron aralioides HOM05D006064 ORTHO05D007619 8.8e-36 154.1 150 58.7
FAN14G0180 Fragaria x ananassa HOM05D006064 ORTHO05D007619 1.2e-35 153.7 141 61.0
RcHm_v2.0_Chr2g0138941 Rosa chinensis HOM05D006064 ORTHO05D007619 1.2e-35 153.7 143 58.7
Ah.01g005550 Amaranthus hybridus HOM05D006064 ORTHO05D007619 1.5e-35 153.3 145 60.7
Thhalv10019289m.g Eutrema salsugineum HOM05D006064 ORTHO05D007619 1.5e-35 153.3 137 60.6
C09p30110 Brassica napus HOM05D006064 ORTHO05D007619 2.0e-35 152.9 144 58.3
A09p23350 Brassica napus HOM05D006064 ORTHO05D007619 3.3e-35 152.1 140 60.0
C09p30100 Brassica napus HOM05D006064 ORTHO05D007619 3.3e-35 152.1 139 59.7
CSS0001890 Camellia sinensis var. sinensis HOM05D006064 ORTHO05D007619 3.3e-35 152.1 151 57.6
BraA09t37936Z Brassica rapa HOM05D006064 ORTHO05D007619 4.4e-35 151.8 140 60.0
Aqoxy7G01608 Aquilegia oxysepala HOM05D006064 ORTHO05D007619 5.7e-35 151.4 152 55.3
AT1G79850 Arabidopsis thaliana HOM05D006064 ORTHO05D007619 5.7e-35 151.4 136 61.8
TWI12G0791 Tripterygium wilfordii HOM05D006064 ORTHO05D007619 5.7e-35 151.4 148 57.4
Carub.0002s2765 Capsella rubella HOM05D006064 ORTHO05D007619 7.5e-35 151.0 134 61.9
Thhalv10001197m.g Eutrema salsugineum HOM05D006064 ORTHO05D007619 7.5e-35 151.0 141 57.4
MBI09_g14014_MAGBIO Magnolia biondii HOM05D006064 ORTHO05D007619 7.5e-35 151.0 136 62.5
TAR626G0023 Trochodendron aralioides HOM05D006064 ORTHO05D007619 7.5e-35 151.0 149 59.7
BcaC04g21590 Brassica carinata HOM05D006064 ORTHO05D007619 1.7e-34 149.8 139 59.0
BolC9t55874H Brassica oleracea HOM05D006064 ORTHO05D007619 1.7e-34 149.8 139 59.0
CDE04G2099 Ceratophyllum demersum HOM05D006064 ORTHO05D007619 1.7e-34 149.8 147 59.2
Lsat_1_v5_gn_5_130940 Lactuca sativa HOM05D006064 ORTHO05D007619 1.7e-34 149.8 150 54.7
FAN05G4262 Fragaria x ananassa HOM05D006064 ORTHO05D007619 2.8e-34 149.1 142 59.2
MD17G1191100 Malus domestica HOM05D006064 ORTHO05D007619 6.3e-34 147.9 147 57.8
CARHR074660 Cardamine hirsuta HOM05D006064 ORTHO05D007619 1.1e-33 147.1 136 58.8
Cpa.g.sc98.5 Carica papaya HOM05D006064 ORTHO05D007619 1.4e-33 146.7 115 64.3
Sp2g12850 Schrenkiella parvula HOM05D006064 ORTHO05D007619 1.8e-33 146.4 140 57.9
Oeu033507.1 Olea europaea HOM05D006064 ORTHO05D007619 3.1e-33 145.6 149 58.4
Actinidia21680 Actinidia chinensis HOM05D006064 ORTHO05D007619 5.3e-33 144.8 139 59.0
Eucgr.F03039 Eucalyptus grandis HOM05D006064 ORTHO05D007619 5.3e-33 144.8 141 57.4
HanXRQChr12g0360791 Helianthus annuus HOM05D006064 ORTHO05D007619 5.3e-33 144.8 139 56.1
CAN.G438.28 Capsicum annuum HOM05D006064 ORTHO05D007619 1.6e-32 143.3 152 53.9
Gohir.A10G081300 Gossypium hirsutum HOM05D006064 ORTHO05D007619 1.6e-32 143.3 102 66.7
PSO566G0311 Papaver somniferum HOM05D006064 ORTHO05D007619 1.6e-32 143.3 146 57.5
Sc12g0009460 Simmondsia chinensis HOM05D006064 ORTHO05D007619 1.6e-32 143.3 141 58.9
TWI75G0440 Tripterygium wilfordii HOM05D006064 ORTHO05D007619 1.6e-32 143.3 148 55.4
PSO782G0135 Papaver somniferum HOM05D006064 ORTHO05D007619 2.0e-32 142.9 146 56.8
SGA_v2.0_scaffold69G23360 Striga asiatica HOM05D006064 ORTHO05D007619 7.7e-32 141.0 141 55.3
Lj5C58T14 Lonicera japonica HOM05D006064 ORTHO05D007619 1.0e-31 140.6 103 68.9
Migut.I00941 Erythranthe guttata HOM05D006064 ORTHO05D007619 2.2e-31 139.4 153 56.9
AUR62011660 Chenopodium quinoa HOM05D006064 ORTHO05D007619 2.9e-31 139.0 151 55.6
MSTRG.11053 Avicennia marina HOM05D006064 ORTHO05D007619 5.0e-31 138.3 140 57.1
AUR62016483 Chenopodium quinoa HOM05D006064 ORTHO05D007619 5.0e-31 138.3 155 55.5
DCAR_016211 Daucus carota HOM05D006064 ORTHO05D007619 5.0e-31 138.3 97 72.2
COL.COLO4_30435 Corchorus olitorius HOM05D006064 ORTHO05D007619 1.9e-30 136.3 100 65.0
ATR0693G299 Amborella trichopoda HOM05D006064 ORTHO05D007619 9.4e-30 134.0 134 56.0
Nitab4.5_0007217g0010 Nicotiana tabacum HOM05D006064 ORTHO05D007619 8.0e-29 131.0 100 66.0
SalBow2G0408 Salvia bowleyana HOM05D006064 ORTHO05D007619 8.0e-29 131.0 98 68.4
EL10Ac9g22030 Beta vulgaris HOM05D006064 ORTHO05D007619 1.0e-28 130.6 100 65.0
Nn2g11694 Nelumbo nucifera HOM05D006064 ORTHO05D007619 1.4e-28 130.2 97 66.0
SGA_v2.0_scaffold5G02555 Striga asiatica HOM05D006064 ORTHO05D007619 4.0e-28 128.6 139 52.5
Nitab4.5_0001315g0190 Nicotiana tabacum HOM05D006064 ORTHO05D007619 6.8e-28 127.9 97 67.0
unitig_46.g18557 Utricularia gibba HOM05D006064 ORTHO05D007619 2.0e-27 126.3 145 51.7
Rhsim08G0223400 Rhododendron simsii HOM05D006064 ORTHO05D007619 5.7e-27 124.8 104 60.6
CSS0048088 Camellia sinensis var. sinensis HOM05D006064 ORTHO05D007619 1.3e-26 123.6 98 64.3
unitig_37.g12253 Utricularia gibba HOM05D000346 ORTHO05D000326 8.3e-26 120.9 143 51.0
SEGI_37104 Sequoiadendron giganteum HOM05D006064 ORTHO05D007619 1.8e-25 119.8 123 56.1
AagrBONN_evm.TU.Sc2ySwM_344.4095 Anthoceros agrestis HOM05D006064 ORTHO05D007619 4.5e-24 115.2 116 53.4
Zm00001eb367450 Zea mays HOM05D006064 ORTHO05D007619 1.0e-23 114.0 141 47.5
AagrBONN_evm.TU.Sc2ySwM_344.4090 Anthoceros agrestis HOM05D006064 ORTHO05D007619 1.3e-23 113.6 116 52.6
Os04g0691600 Oryza sativa ssp. japonica HOM05D006064 ORTHO05D007619 1.1e-22 110.5 140 48.6
vmacro18887 Vaccinium macrocarpon HOM05D006064 ORTHO05D007619 1.5e-22 110.2 97 58.8
CSS0034695 Camellia sinensis var. sinensis HOM05D006064 ORTHO05D007619 3.2e-22 109.0 98 59.2
Pp3c11_14630 Physcomitrium patens HOM05D006064 ORTHO05D007619 1.6e-21 106.7 116 50.0
Pp3c1_12860 Physcomitrium patens HOM05D006064 ORTHO05D007619 4.7e-21 105.1 115 48.7
Nn3g18074 Nelumbo nucifera HOM05D006064 ORTHO05D007619 6.1e-21 104.8 99 58.6
MD09G1209400 Malus domestica HOM05D006064 ORTHO05D007619 1.4e-20 103.6 96 58.3
Zm00001eb434460 Zea mays HOM05D006064 ORTHO05D007619 1.5e-19 100.1 133 45.9
Mapoly0027s0119 Marchantia polymorpha HOM05D006064 ORTHO05D007619 5.7e-19 98.2 122 46.7
CBR_g33913 Chara braunii HOM05D006064 ORTHO05D007619 2.2e-18 96.3 80 55.0
Actinidia32730 Actinidia chinensis HOM05D006064 ORTHO05D007619 5.0e-15 85.1 98 50.0
SMO358G0237 Selaginella moellendorffii HOM05D006064 ORTHO05D007619 6.6e-15 84.7 73 57.5
Peaxi162Scf00015g00005 Petunia axillaris HOM05D006064 ORTHO05D007619 2.3e-12 76.3 61 63.9
SalBow1G4549 Salvia bowleyana HOM05D006064 ORTHO05D007619 5.7e-11 71.6 81 50.6
Actinidia13476 Actinidia chinensis HOM05D006064 ORTHO05D007619 2.2e-10 69.7 54 61.1
PRCOL_00005962 Prasinoderma coloniale HOM05D006064 ORTHO05D007619 3.2e-09 65.9 114 36.0
MCO03G166 Micromonas commoda HOM05D006064 ORTHO05D007619 5.9e-08 61.6 96 40.6
Cre02.g118950 Chlamydomonas reinhardtii HOM05D004588 ORTHO05D005365 1.0e-07 60.8 82 40.2
Haze_02816 Corylus avellana HOM05D002629 ORTHO05D003221 2.3e-07 59.7 53 56.6
Actinidia35657 Actinidia chinensis HOM05D006064 ORTHO05D007619 3.9e-07 58.9 97 38.1
Mapoly0128s0026 Marchantia polymorpha HOM05D004588 ORTHO05D005365 8.6e-07 57.8 77 40.3
AagrBONN_evm.TU.Sc2ySwM_362.494 Anthoceros agrestis HOM05D004588 ORTHO05D005365 1.9e-06 56.6 105 32.4
CBR_g18728 Chara braunii HOM05D004588 ORTHO05D005365 3.3e-06 55.8 77 40.3
MCO14G513 Micromonas commoda HOM05D004588 ORTHO05D005365 3.3e-06 55.8 74 37.8


User provided reference genes

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