Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g090095 Medicago truncatula HOM05D004586 ORTHO05D005266 1.2e-280 969.5 632 100.0
Ca_27565_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 8.2e-112 408.7 701 44.5
TPR.G27075 Trifolium pratense HOM05D004586 ORTHO05D005266 8.5e-109 398.7 741 53.8
Psat5g270160 Pisum sativum HOM05D004586 ORTHO05D005266 2.3e-98 364.0 745 50.1
Phvul.011G112400 Phaseolus vulgaris HOM05D004586 ORTHO05D005266 2.7e-78 297.4 355 48.5
VMungo1127G2109 Vigna mungo HOM05D004586 ORTHO05D005266 4.6e-78 296.6 356 48.9
Glyma.12G108100 Glycine max HOM05D004586 ORTHO05D005266 1.3e-72 278.5 383 47.0
Lj3g0023901 Lotus japonicus HOM05D004586 ORTHO05D005266 1.1e-71 275.4 397 44.1
Lalb_Chr01g0005391 Lupinus albus HOM05D004586 ORTHO05D005266 1.2e-70 271.9 395 43.3
Lj3g0000702 Lotus japonicus HOM05D004586 ORTHO05D005266 1.6e-70 271.6 468 42.1
Glyma.06G297000 Glycine max HOM05D004586 ORTHO05D005266 6.6e-69 266.2 345 48.7
arahy.Tifrunner.gnm1.ann1.FC6AAX Arachis hypogaea HOM05D004586 ORTHO05D005266 8.6e-69 265.8 396 44.9
Medtr0072s0050 Medicago truncatula HOM05D004586 ORTHO05D005266 3.1e-66 257.3 396 42.7
arahy.Tifrunner.gnm1.ann1.SANC69 Arachis hypogaea HOM05D004586 ORTHO05D005266 6.8e-66 256.1 364 45.3
Ca_20687_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 9.9e-65 252.3 410 41.2
Psat0s4261g0040 Pisum sativum HOM05D004586 ORTHO05D005266 6.4e-64 249.6 410 42.2
Prupe.3G233000 Prunus persica HOM05D004586 ORTHO05D005266 2.4e-63 247.7 352 44.9
TPR.G21660 Trifolium pratense HOM05D004586 ORTHO05D005266 5.4e-63 246.5 416 39.7
RcHm_v2.0_Chr2g0162091 Rosa chinensis HOM05D004586 ORTHO05D005266 8.7e-61 239.2 398 41.2
FAN09G2343 Fragaria x ananassa HOM05D004586 ORTHO05D005266 3.3e-60 237.3 413 41.9
Duzib052G0504 Durio zibethinus HOM05D004586 ORTHO05D005266 2.1e-59 234.6 349 43.0
MD09G1092000 Malus domestica HOM05D004586 ORTHO05D005266 2.8e-59 234.2 415 40.0
CiPaw.03G171000 Carya illinoinensis HOM05D004586 ORTHO05D005266 4.7e-59 233.4 348 43.7
QL10p048480 Quercus lobata HOM05D004586 ORTHO05D005266 2.4e-58 231.1 367 40.9
Actinidia09891 Actinidia chinensis HOM05D004586 ORTHO05D005266 3.1e-58 230.7 389 40.1
Haze_13103 Corylus avellana HOM05D004586 ORTHO05D005266 3.1e-58 230.7 427 39.6
Atru.chr6.3049 Acer truncatum HOM05D004586 ORTHO05D005266 4.0e-58 230.3 379 42.5
CSS0039758 Camellia sinensis var. sinensis HOM05D004586 ORTHO05D005266 6.9e-58 229.6 417 38.6
Cpa.g.sc34.112 Carica papaya HOM05D004586 ORTHO05D005266 1.2e-57 228.8 311 44.1
FvH4_6g44910 Fragaria vesca HOM05D004586 ORTHO05D005266 1.2e-57 228.8 431 39.9
MD17G1081900 Malus domestica HOM05D004586 ORTHO05D005266 1.5e-57 228.4 426 39.0
Ciclev10014470m.g Citrus clementina HOM05D004586 ORTHO05D005266 2.0e-57 228.0 443 40.0
Actinidia12449 Actinidia chinensis HOM05D004586 ORTHO05D005266 3.4e-57 227.3 398 40.7
COL.COLO4_13701 Corchorus olitorius HOM05D004586 ORTHO05D005266 7.6e-57 226.1 327 42.5
FAN02G1766 Fragaria x ananassa HOM05D004586 ORTHO05D005266 7.6e-57 226.1 414 40.8
Gohir.A13G144300 Gossypium hirsutum HOM05D004586 ORTHO05D005266 1.7e-56 224.9 343 41.1
SGA_v2.0_scaffold159G37633 Striga asiatica HOM05D004586 ORTHO05D005266 3.8e-56 223.8 425 38.4
CANSAT64G2104 Cannabis sativa HOM05D004586 ORTHO05D005266 4.9e-56 223.4 426 39.2
Manes.12G079600 Manihot esculenta HOM05D004586 ORTHO05D005266 6.4e-56 223.0 391 42.2
PGSC0003DMG400018364 Solanum tuberosum HOM05D004586 ORTHO05D005266 1.1e-55 222.2 404 38.4
COL.COLO4_08510 Corchorus olitorius HOM05D004586 ORTHO05D005266 1.9e-55 221.5 196 59.2
Nitab4.5_0003018g0070 Nicotiana tabacum HOM05D004586 ORTHO05D005266 2.4e-55 221.1 414 38.9
Nitab4.5_0009520g0030 Nicotiana tabacum HOM05D004586 ORTHO05D005266 2.4e-55 221.1 329 43.2
Gorai.013G166800 Gossypium raimondii HOM05D004586 ORTHO05D005266 4.2e-55 220.3 375 39.5
FAN05G3704 Fragaria x ananassa HOM05D004586 ORTHO05D005266 5.4e-55 219.9 418 42.3
Thecc.02G173500 Theobroma cacao HOM05D004586 ORTHO05D005266 5.4e-55 219.9 396 41.7
FAN14G4866 Fragaria x ananassa HOM05D004586 ORTHO05D005266 7.1e-55 219.5 431 39.0
TAR627G0949 Trochodendron aralioides HOM05D004586 ORTHO05D005266 7.1e-55 219.5 417 39.6
Duzib106G1111 Durio zibethinus HOM05D004586 ORTHO05D005266 9.3e-55 219.2 390 39.7
GSVIVG01030569001 Vitis vinifera HOM05D004586 ORTHO05D005266 9.3e-55 219.2 176 62.5
TWI36G0730 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 1.6e-54 218.4 440 36.8
Sabra13G0117000 Salix brachista HOM05D004586 ORTHO05D005266 2.1e-54 218.0 399 39.8
Gohir.D13G149100 Gossypium hirsutum HOM05D004586 ORTHO05D005266 3.5e-54 217.2 375 39.2
Sed0007770 Sechium edule HOM05D004586 ORTHO05D005266 3.5e-54 217.2 453 37.7
Cfa014556 Carpinus fangiana HOM05D004586 ORTHO05D005266 4.6e-54 216.9 355 43.4
Hma1.2p1_0875F.1_g231553 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 7.8e-54 216.1 415 37.8
Hma1.2p1_0875F.1_g231580 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 7.8e-54 216.1 415 37.8
Potri.013G145300 Populus trichocarpa HOM05D004586 ORTHO05D005266 7.8e-54 216.1 385 39.5
ClCG02G017410 Citrullus lanatus HOM05D004586 ORTHO05D005266 1.3e-53 215.3 269 48.7
Lj1C734T7 Lonicera japonica HOM05D004586 ORTHO05D005266 1.7e-53 214.9 320 46.2
Sopen07g028400 Solanum pennellii HOM05D004586 ORTHO05D005266 2.3e-53 214.5 372 38.4
Oeu025511.1 Olea europaea HOM05D004586 ORTHO05D005266 3.0e-53 214.2 234 51.3
Peaxi162Scf00007g02845 Petunia axillaris HOM05D004586 ORTHO05D005266 3.9e-53 213.8 383 38.6
THA.LOC104826023 Tarenaya hassleriana HOM05D004586 ORTHO05D005266 3.9e-53 213.8 233 51.5
Potri.019G104400 Populus trichocarpa HOM05D004586 ORTHO05D005266 1.1e-52 212.2 330 42.1
SGA_v2.0_scaffold49G18309 Striga asiatica HOM05D004586 ORTHO05D005266 1.1e-52 212.2 369 40.1
Solyc07g054460.4 Solanum lycopersicum HOM05D004586 ORTHO05D005266 1.5e-52 211.8 379 38.5
arahy.Tifrunner.gnm1.ann1.7D4Z5S Arachis hypogaea HOM05D004586 ORTHO05D005266 1.9e-52 211.5 551 37.0
arahy.Tifrunner.gnm1.ann1.IS01QF Arachis hypogaea HOM05D004586 ORTHO05D005266 1.9e-52 211.5 560 36.4
SalBow1G4799 Salvia bowleyana HOM05D004586 ORTHO05D005266 1.9e-52 211.5 222 54.5
SalBow7G1236 Salvia bowleyana HOM05D004586 ORTHO05D005266 1.9e-52 211.5 222 54.5
TAR629G0893 Trochodendron aralioides HOM05D004586 ORTHO05D005266 4.3e-52 210.3 279 48.4
MSTRG.14187 Avicennia marina HOM05D004586 ORTHO05D005266 9.6e-52 209.1 233 51.1
CsaV3_2G036510 Cucumis sativus L. HOM05D004586 ORTHO05D005266 9.6e-52 209.1 263 48.7
TWI18G0514 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 9.6e-52 209.1 453 37.7
MBI02_g10548_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 1.6e-51 208.4 227 52.9
ECA234G1777 Erigeron canadensis HOM05D004586 ORTHO05D005266 2.1e-51 208.0 211 51.7
CAN.G78.83 Capsicum annuum HOM05D004586 ORTHO05D005266 2.8e-51 207.6 289 43.6
AUR62035735 Chenopodium quinoa HOM05D004586 ORTHO05D005266 2.8e-51 207.6 242 50.0
MELO3C003861.2 Cucumis melo HOM05D004586 ORTHO05D005266 2.8e-51 207.6 452 37.6
Rhsim06G0149700 Rhododendron simsii HOM05D004586 ORTHO05D005266 8.1e-51 206.1 335 39.7
Eucgr.B03848 Eucalyptus grandis HOM05D004586 ORTHO05D005266 1.8e-50 204.9 387 38.8
EL10As5g23555 Beta vulgaris HOM05D004586 ORTHO05D005266 4.0e-50 203.8 214 50.9
C08p00660 Brassica napus HOM05D004586 ORTHO05D005266 6.9e-50 203.0 221 52.9
HanXRQChr05g0140481 Helianthus annuus HOM05D004586 ORTHO05D005266 9.0e-50 202.6 217 50.2
HanXRQChr14g0441421 Helianthus annuus HOM05D004586 ORTHO05D005266 9.0e-50 202.6 216 50.0
AT1G03530 Arabidopsis thaliana HOM05D004586 ORTHO05D005266 1.5e-49 201.8 196 53.6
BraA10t42477Z Brassica rapa HOM05D000330 ORTHO05D000209 1.5e-49 201.8 218 52.3
MELO3C021880.2 Cucumis melo HOM05D004586 ORTHO05D005266 2.6e-49 201.1 170 61.8
Migut.H01030 Erythranthe guttata HOM05D004586 ORTHO05D005266 4.5e-49 200.3 362 38.1
PSO541G0834 Papaver somniferum HOM05D004586 ORTHO05D005266 4.5e-49 200.3 237 47.7
Thhalv10006867m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 5.8e-49 199.9 376 38.3
Lsat_1_v5_gn_4_68860 Lactuca sativa HOM05D004586 ORTHO05D005266 5.8e-49 199.9 212 50.9
BraA08t35631Z Brassica rapa HOM05D004586 ORTHO05D005266 7.6e-49 199.5 217 51.6
PSO675G0516 Papaver somniferum HOM05D004586 ORTHO05D005266 7.6e-49 199.5 237 48.5
Cc00_g21120 Coffea canephora HOM05D004586 ORTHO05D005266 9.9e-49 199.1 445 37.3
AUR62000198 Chenopodium quinoa HOM05D004586 ORTHO05D005266 1.3e-48 198.7 224 50.9
BcaB02g06919 Brassica carinata HOM05D004586 ORTHO05D005266 2.2e-48 198.0 382 37.4
DCAR_019194 Daucus carota HOM05D004586 ORTHO05D005266 2.2e-48 198.0 322 41.3
unitig_26.g9937 Utricularia gibba HOM05D004586 ORTHO05D005266 2.2e-48 198.0 230 50.0
C05p01990 Brassica napus HOM05D004586 ORTHO05D005266 4.9e-48 196.8 389 38.3
Carub.0001s0267 Capsella rubella HOM05D004586 ORTHO05D005266 4.9e-48 196.8 232 48.7
Sp1g02460 Schrenkiella parvula HOM05D004586 ORTHO05D005266 4.9e-48 196.8 403 38.2
Sc12g0002770 Simmondsia chinensis HOM05D004586 ORTHO05D005266 6.4e-48 196.4 226 51.3
Hund09647 Selenicereus undatus HOM05D004586 ORTHO05D005266 8.4e-48 196.1 290 42.1
vmacro12267 Vaccinium macrocarpon HOM05D004586 ORTHO05D005266 8.4e-48 196.1 407 36.4
A10p02080 Brassica napus HOM05D000330 ORTHO05D005266 1.4e-47 195.3 222 50.5
A08p37340 Brassica napus HOM05D004586 ORTHO05D005266 1.9e-47 194.9 217 49.8
AL1G13040 Arabidopsis lyrata HOM05D004586 ORTHO05D005266 2.4e-47 194.5 229 48.5
PGR042G3101 Punica granatum HOM05D004586 ORTHO05D005266 9.3e-47 192.6 436 35.1
Peaxi162Scf00485g00032 Petunia axillaris HOM05D004586 ORTHO05D005266 3.5e-46 190.7 264 44.7
BcaC05g24523 Brassica carinata HOM05D004586 ORTHO05D005266 4.6e-46 190.3 391 37.3
BolC5t28977H Brassica oleracea HOM05D004586 ORTHO05D005266 4.6e-46 190.3 391 37.3
PSO384G2677 Papaver somniferum HOM05D004586 ORTHO05D005266 4.6e-46 190.3 262 42.7
CARHR002890 Cardamine hirsuta HOM05D004586 ORTHO05D005266 6.0e-46 189.9 190 51.6
SHI10466 Sapria himalayana HOM05D004586 ORTHO05D005266 1.8e-45 188.3 351 38.5
CDE02G0135 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 6.7e-45 186.4 156 56.4
BolC8t46864H Brassica oleracea HOM05D004586 ORTHO05D005266 3.3e-44 184.1 216 46.3
Zm00001eb292050 Zea mays HOM05D004586 ORTHO05D005266 3.3e-44 184.1 181 51.4
ATR0693G407 Amborella trichopoda HOM05D004586 ORTHO05D005266 4.3e-44 183.7 216 50.5
Nn1g03938 Nelumbo nucifera HOM05D004586 ORTHO05D005266 1.3e-43 182.2 163 58.9
Os05g0502800 Oryza sativa ssp. japonica HOM05D004586 ORTHO05D005266 2.1e-43 181.4 169 53.3
CAN.G996.7 Capsicum annuum HOM05D004586 ORTHO05D005266 1.4e-42 178.7 409 35.9
Aa31LG1G20890 Aethionema arabicum HOM05D004586 ORTHO05D005266 2.0e-41 174.9 215 47.4
Thhalv10024822m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 2.0e-41 174.9 155 55.5
HPP92_014062 Vanilla planifolia HOM05D004586 ORTHO05D005266 4.5e-41 173.7 439 33.3
Dinv15471 Davidia involucrata HOM05D004586 ORTHO05D005266 1.3e-40 172.2 361 35.5
Ah.01g003940 Amaranthus hybridus HOM05D004586 ORTHO05D005266 2.5e-39 167.9 401 34.7
Nitab4.5_0007732g0010 Nicotiana tabacum HOM05D004586 ORTHO05D005266 4.2e-39 167.2 190 50.5
SEGI_15076 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 5.5e-39 166.8 194 46.4
Lalb_Chr22g0356411 Lupinus albus HOM05D004586 ORTHO05D005266 1.6e-38 165.2 340 37.1
SMO137G0274 Selaginella moellendorffii HOM05D004586 ORTHO05D005266 1.8e-34 151.8 130 55.4
CDE02G4059 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 1.1e-31 142.5 235 38.7
Pp3c14_14050 Physcomitrium patens HOM05D004586 ORTHO05D005266 1.1e-31 142.5 146 50.0
Pp3c10_10230 Physcomitrium patens HOM05D004586 ORTHO05D005266 3.5e-30 137.5 138 52.2
SEGI_36208 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 2.3e-29 134.8 140 47.1
Mapoly0108s0039 Marchantia polymorpha HOM05D004586 ORTHO05D005266 1.4e-26 125.6 184 40.8
CBR_g12767 Chara braunii HOM05D004586 ORTHO05D005266 1.8e-26 125.2 157 42.7
Medtr7g116780 Medicago truncatula HOM05D004586 ORTHO05D005266 6.9e-26 123.2 141 52.5
AagrBONN_evm.TU.Sc2ySwM_117.2920 Anthoceros agrestis HOM05D004586 ORTHO05D005266 5.9e-25 120.2 172 39.0
MBI02_g27225_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 5.1e-21 107.1 261 34.9
BcaB08g36102 Brassica carinata HOM05D004586 ORTHO05D005266 2.6e-17 94.7 96 52.1
Psat0s10217g0080 Pisum sativum HOM05D004586 ORTHO05D005266 4.5e-17 94.0 96 52.1
BcaB01g00913 Brassica carinata HOM05D004586 ORTHO05D005266 1.4e-15 89.0 135 43.7
MCO05G032 Micromonas commoda HOM05D004586 ORTHO05D005266 2.0e-09 68.6 235 29.8
AL2G23840 Arabidopsis lyrata HOM05D020923 ORTHO05D021440 3.5e-09 67.8 93 41.9
DCAR_012988 Daucus carota HOM05D004586 ORTHO05D005266 1.7e-08 65.5 278 29.1
Carub.0006s3370 Capsella rubella HOM05D020923 ORTHO05D021440 8.5e-08 63.2 174 31.0
Cre10.g467100 Chlamydomonas reinhardtii HOM05D004586 ORTHO05D005266 1.9e-07 62.0 109 30.3


User provided reference genes

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