Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g089510 Medicago truncatula HOM05D004713 ORTHO05D005658 3.4e-132 474.9 230 100.0
Psat5g267960 Pisum sativum HOM05D004713 ORTHO05D005658 4.5e-124 448.0 231 93.9
TPR.G18047 Trifolium pratense HOM05D004713 ORTHO05D005658 7.1e-122 440.7 231 91.8
Lj3g0005468 Lotus japonicus HOM05D004713 ORTHO05D005658 1.8e-112 409.5 230 84.3
VMungo1080G0078 Vigna mungo HOM05D004713 ORTHO05D005658 1.8e-112 409.5 230 83.9
Phvul.005G109400 Phaseolus vulgaris HOM05D004713 ORTHO05D005658 3.0e-112 408.7 230 84.8
Glyma.12G199400 Glycine max HOM05D004713 ORTHO05D005658 5.7e-111 404.4 230 83.5
Glyma.13G302900 Glycine max HOM05D004713 ORTHO05D005658 3.7e-110 401.7 230 83.5
QL08p036617 Quercus lobata HOM05D004713 ORTHO05D005658 5.5e-106 387.9 229 79.0
TAR627G1043 Trochodendron aralioides HOM05D004713 ORTHO05D005658 9.4e-106 387.1 230 79.1
TWI36G0474 Tripterygium wilfordii HOM05D004713 ORTHO05D005658 1.2e-105 386.7 230 80.9
Duzib248G1304 Durio zibethinus HOM05D004713 ORTHO05D005658 2.1e-105 386.0 230 78.7
Gohir.A03G161000 Gossypium hirsutum HOM05D004713 ORTHO05D005658 2.1e-105 386.0 230 79.6
Gohir.D02G184350 Gossypium hirsutum HOM05D004713 ORTHO05D005658 2.1e-105 386.0 230 79.6
Gorai.005G206600 Gossypium raimondii HOM05D004713 ORTHO05D005658 2.1e-105 386.0 230 79.6
Lalb_Chr24g0399801 Lupinus albus HOM05D004713 ORTHO05D005658 3.6e-105 385.2 230 80.9
Gorai.005G206500 Gossypium raimondii HOM05D004713 ORTHO05D005658 4.6e-105 384.8 230 79.6
Gohir.D02G184300 Gossypium hirsutum HOM05D004713 ORTHO05D005658 6.1e-105 384.4 230 79.6
Potri.019G118500 Populus trichocarpa HOM05D004713 ORTHO05D005658 1.0e-104 383.6 231 80.1
Cfa020490 Carpinus fangiana HOM05D004713 ORTHO05D005658 5.1e-104 381.3 230 78.7
Thecc.02G168200 Theobroma cacao HOM05D004713 ORTHO05D005658 5.1e-104 381.3 231 79.2
Potri.013G148900 Populus trichocarpa HOM05D004713 ORTHO05D005658 1.1e-103 380.2 231 79.7
Duzib132G0433 Durio zibethinus HOM05D004713 ORTHO05D005658 1.5e-103 379.8 230 77.4
CiPaw.12G123600 Carya illinoinensis HOM05D004713 ORTHO05D005658 2.5e-103 379.0 231 76.6
Prupe.3G228100 Prunus persica HOM05D004713 ORTHO05D005658 3.3e-103 378.6 230 77.8
arahy.Tifrunner.gnm1.ann1.39S8LV Arachis hypogaea HOM05D004713 ORTHO05D005658 1.7e-102 376.3 234 79.5
RhsimUnG0257700 Rhododendron simsii HOM05D004713 ORTHO05D005658 2.2e-102 375.9 230 76.5
MD17G1086300 Malus domestica HOM05D004713 ORTHO05D005658 2.8e-102 375.6 230 77.4
Sc21g0002180 Simmondsia chinensis HOM05D004713 ORTHO05D005658 2.8e-102 375.6 231 78.4
Sabra19G0119100 Salix brachista HOM05D004713 ORTHO05D005658 3.7e-102 375.2 231 78.8
Sabra19G0134800 Salix brachista HOM05D004713 ORTHO05D005658 3.7e-102 375.2 231 78.8
Lalb_Chr14g0366531 Lupinus albus HOM05D004713 ORTHO05D005658 4.8e-102 374.8 230 78.7
MD09G1098300 Malus domestica HOM05D004713 ORTHO05D005658 4.8e-102 374.8 230 77.0
Sabra13G0120100 Salix brachista HOM05D004713 ORTHO05D005658 4.8e-102 374.8 231 78.4
Aqoxy1G03929 Aquilegia oxysepala HOM05D004713 ORTHO05D005658 6.3e-102 374.4 230 77.4
arahy.Tifrunner.gnm1.ann1.V1P8P6 Arachis hypogaea HOM05D004713 ORTHO05D005658 8.2e-102 374.0 230 77.4
CiPaw.11G178400 Carya illinoinensis HOM05D004713 ORTHO05D005658 8.2e-102 374.0 230 76.1
arahy.Tifrunner.gnm1.ann1.F0UT86 Arachis hypogaea HOM05D004713 ORTHO05D005658 9.1e-101 370.5 234 78.2
Manes.14G016000 Manihot esculenta HOM05D004713 ORTHO05D005658 9.1e-101 370.5 231 76.6
Nn1g03832 Nelumbo nucifera HOM05D004713 ORTHO05D005658 9.1e-101 370.5 231 77.1
CANSAT11G1961 Cannabis sativa HOM05D004713 ORTHO05D005658 1.2e-100 370.2 230 74.8
Hma1.2p1_1258F.1_g270890 Hydrangea macrophylla HOM05D004713 ORTHO05D005658 1.2e-100 370.2 230 76.5
Hma1.2p1_2769F.1_g328190 Hydrangea macrophylla HOM05D004713 ORTHO05D005658 1.2e-100 370.2 230 76.1
arahy.Tifrunner.gnm1.ann1.NN0MZU Arachis hypogaea HOM05D004713 ORTHO05D005658 1.5e-100 369.8 230 76.5
FAN02G1221 Fragaria x ananassa HOM05D004713 ORTHO05D005658 2.6e-100 369.0 230 77.0
FAN05G5200 Fragaria x ananassa HOM05D004713 ORTHO05D005658 3.4e-100 368.6 230 77.0
FAN05G5597 Fragaria x ananassa HOM05D004713 ORTHO05D005658 3.4e-100 368.6 230 77.0
Manes.13G077148 Manihot esculenta HOM05D004713 ORTHO05D005658 3.4e-100 368.6 231 76.2
GSVIVG01014457001 Vitis vinifera HOM05D004713 ORTHO05D005658 4.5e-100 368.2 231 75.3
PSO541G4076 Papaver somniferum HOM05D004713 ORTHO05D005658 5.9e-100 367.9 230 78.3
PSO675G3482 Papaver somniferum HOM05D004713 ORTHO05D005658 5.9e-100 367.9 230 78.3
Actinidia35286 Actinidia chinensis HOM05D004713 ORTHO05D005658 7.7e-100 367.5 231 76.6
CSS0013440 Camellia sinensis var. sinensis HOM05D004713 ORTHO05D005658 7.7e-100 367.5 231 76.6
AUR62025154 Chenopodium quinoa HOM05D004713 ORTHO05D005658 7.7e-100 367.5 231 76.2
FvH4_6g44370 Fragaria vesca HOM05D004713 ORTHO05D005658 7.7e-100 367.5 230 76.1
CsaV3_7G004050 Cucumis sativus L. HOM05D004713 ORTHO05D005658 1.7e-99 366.3 230 76.5
vmacro09572 Vaccinium macrocarpon HOM05D004713 ORTHO05D005658 1.7e-99 366.3 230 76.1
PGR083G1071 Punica granatum HOM05D004713 ORTHO05D005658 2.9e-99 365.5 233 75.5
Dinv13841 Davidia involucrata HOM05D004713 ORTHO05D005658 3.8e-99 365.2 230 76.5
Haze_09549 Corylus avellana HOM05D004713 ORTHO05D005658 8.5e-99 364.0 232 75.4
RcHm_v2.0_Chr2g0161301 Rosa chinensis HOM05D004713 ORTHO05D005658 1.1e-98 363.6 230 75.2
THA.LOC104801189 Tarenaya hassleriana HOM05D004713 ORTHO05D005658 3.2e-98 362.1 230 75.7
Lsat_1_v5_gn_0_5321 Lactuca sativa HOM05D004713 ORTHO05D005658 4.2e-98 361.7 230 73.0
Lj1A855G17 Lonicera japonica HOM05D004713 ORTHO05D005658 1.2e-97 360.1 234 72.2
ClCG02G001400 Citrullus lanatus HOM05D004713 ORTHO05D005658 1.6e-97 359.8 240 72.9
Atru.chr6.3090 Acer truncatum HOM05D004713 ORTHO05D005658 2.7e-97 359.0 232 76.3
Duzib052G0720 Durio zibethinus HOM05D004713 ORTHO05D005658 2.7e-97 359.0 232 75.9
Migut.M00361 Erythranthe guttata HOM05D004713 ORTHO05D005658 2.7e-97 359.0 232 77.2
Lj8C161T8 Lonicera japonica HOM05D004713 ORTHO05D005658 3.6e-97 358.6 256 69.5
Peaxi162Scf00485g00109 Petunia axillaris HOM05D004713 ORTHO05D005658 4.7e-97 358.2 231 75.3
Cpa.g.sc34.64 Carica papaya HOM05D004713 ORTHO05D005658 1.8e-96 356.3 234 76.5
Gohir.A03G160900 Gossypium hirsutum HOM05D004713 ORTHO05D005658 3.0e-96 355.5 208 80.3
CAN.G980.4 Capsicum annuum HOM05D004713 ORTHO05D005658 3.9e-96 355.1 233 73.4
AUR62033720 Chenopodium quinoa HOM05D004713 ORTHO05D005658 5.1e-96 354.8 231 74.5
Sed0023828 Sechium edule HOM05D004713 ORTHO05D005658 2.0e-95 352.8 231 74.0
Eucgr.A01769 Eucalyptus grandis HOM05D004713 ORTHO05D005658 2.6e-95 352.4 231 74.5
Carub.0006s3378 Capsella rubella HOM05D004713 ORTHO05D005658 4.4e-95 351.7 233 75.1
Sopen12g001560 Solanum pennellii HOM05D004713 ORTHO05D005658 5.7e-95 351.3 233 74.2
ECA240G4341 Erigeron canadensis HOM05D004713 ORTHO05D005658 1.3e-94 350.1 233 72.5
AT4G03280 Arabidopsis thaliana HOM05D004713 ORTHO05D005658 1.7e-94 349.7 233 74.7
FAN14G2217 Fragaria x ananassa HOM05D004713 ORTHO05D005658 1.7e-94 349.7 265 66.0
Solyc12g005630.2 Solanum lycopersicum HOM05D004713 ORTHO05D005658 1.7e-94 349.7 234 74.4
Cc05_g05920 Coffea canephora HOM05D004713 ORTHO05D005658 3.7e-94 348.6 235 71.9
Hund01214 Selenicereus undatus HOM05D004713 ORTHO05D005658 4.8e-94 348.2 234 72.6
AL6G49650 Arabidopsis lyrata HOM05D004713 ORTHO05D005658 6.3e-94 347.8 233 74.2
PGSC0003DMG400013751 Solanum tuberosum HOM05D004713 ORTHO05D005658 8.2e-94 347.4 233 73.0
Ah.01g014440 Amaranthus hybridus HOM05D004713 ORTHO05D005658 1.8e-93 346.3 232 73.3
Aa31LG5G2780 Aethionema arabicum HOM05D004713 ORTHO05D005658 3.1e-93 345.5 219 75.8
GSVIVG01015713001 Vitis vinifera HOM05D004713 ORTHO05D005658 5.3e-93 344.7 220 74.1
MSTRG.6530 Avicennia marina HOM05D004713 ORTHO05D005658 9.1e-93 344.0 232 74.1
CARHR251730 Cardamine hirsuta HOM05D004713 ORTHO05D005658 1.2e-92 343.6 233 73.8
ATR1132G116 Amborella trichopoda HOM05D004713 ORTHO05D005658 1.5e-92 343.2 230 73.0
DCAR_008695 Daucus carota HOM05D004713 ORTHO05D005658 2.0e-92 342.8 231 72.3
Oeu019373.1 Olea europaea HOM05D004713 ORTHO05D005658 2.0e-92 342.8 202 79.2
PGR042G3467 Punica granatum HOM05D004713 ORTHO05D005658 2.6e-92 342.4 234 70.1
HanXRQChr13g0407301 Helianthus annuus HOM05D004713 ORTHO05D005658 5.9e-92 341.3 232 71.1
BcaC01g06693 Brassica carinata HOM05D004713 ORTHO05D005658 1.0e-91 340.5 231 73.2
C09p02650 Brassica napus HOM05D004713 ORTHO05D005658 1.3e-91 340.1 235 72.8
BolC3t15998H Brassica oleracea HOM05D004713 ORTHO05D005658 1.3e-91 340.1 231 73.2
BolC9t53193H Brassica oleracea HOM05D004713 ORTHO05D005658 1.3e-91 340.1 235 72.8
Thhalv10028941m.g Eutrema salsugineum HOM05D004713 ORTHO05D005658 1.3e-91 340.1 233 73.4
BcaC04g23984 Brassica carinata HOM05D004713 ORTHO05D005658 1.7e-91 339.7 235 72.8
HanXRQChr03g0077251 Helianthus annuus HOM05D004713 ORTHO05D005658 1.7e-91 339.7 231 69.7
A03p30490 Brassica napus HOM05D004713 ORTHO05D005658 2.9e-91 339.0 231 72.7
C03p36910 Brassica napus HOM05D004713 ORTHO05D005658 2.9e-91 339.0 231 72.7
BraA03t12231Z Brassica rapa HOM05D004713 ORTHO05D005658 2.9e-91 339.0 231 72.7
EL10Ac9g20726 Beta vulgaris HOM05D004713 ORTHO05D005658 3.8e-91 338.6 232 72.0
Ciclev10016706m.g Citrus clementina HOM05D004713 ORTHO05D005658 3.8e-91 338.6 209 74.6
Sp6g03320 Schrenkiella parvula HOM05D004713 ORTHO05D005658 5.0e-91 338.2 233 72.5
SGA_v2.0_scaffold159G37610 Striga asiatica HOM05D004713 ORTHO05D005658 1.1e-90 337.0 231 72.7
BcaB01g01960 Brassica carinata HOM05D004713 ORTHO05D005658 1.4e-90 336.7 234 73.1
BcaB01g02517 Brassica carinata HOM05D004713 ORTHO05D005658 2.5e-90 335.9 233 73.0
SalBow7G3919 Salvia bowleyana HOM05D004713 ORTHO05D005658 3.2e-90 335.5 269 63.2
MBI18_g36116_MAGBIO Magnolia biondii HOM05D004713 ORTHO05D005658 7.2e-90 334.3 232 70.7
A09p02620 Brassica napus HOM05D004713 ORTHO05D005658 1.6e-89 333.2 235 71.9
BraA09t35905Z Brassica rapa HOM05D004713 ORTHO05D005658 1.6e-89 333.2 235 71.9
Nitab4.5_0002714g0020 Nicotiana tabacum HOM05D004713 ORTHO05D005658 2.7e-89 332.4 233 72.5
HPP92_001796 Vanilla planifolia HOM05D004713 ORTHO05D005658 3.6e-89 332.0 231 68.8
Os07g0556200 Oryza sativa ssp. japonica HOM05D004713 ORTHO05D005658 8.8e-88 327.4 232 69.8
SGA_v2.0_scaffold49G18316 Striga asiatica HOM05D004713 ORTHO05D005658 2.0e-87 326.2 230 70.0
Ca_01549_v3 Cicer arietinum L. HOM05D004713 ORTHO05D005658 3.3e-87 325.5 180 85.6
Nitab4.5_0014322g0020 Nicotiana tabacum HOM05D004713 ORTHO05D005658 3.3e-87 325.5 233 71.2
Actinidia12471 Actinidia chinensis HOM05D004713 ORTHO05D005658 1.6e-84 316.6 230 67.4
Zm00001eb204410 Zea mays HOM05D004713 ORTHO05D005658 3.5e-84 315.5 229 66.8
MELO3C018775.2 Cucumis melo HOM05D004713 ORTHO05D005658 1.7e-83 313.2 198 75.8
Eucgr.F01067 Eucalyptus grandis HOM05D004713 ORTHO05D005658 1.7e-83 313.2 196 76.0
unitig_85.g27301 Utricularia gibba HOM05D004713 ORTHO05D005658 1.2e-81 307.0 225 68.0
Zm00001eb238370 Zea mays HOM05D004713 ORTHO05D005658 1.8e-80 303.1 230 64.8
FAN09G3163 Fragaria x ananassa HOM05D004713 ORTHO05D005658 2.3e-80 302.8 200 73.5
SMO358G0667 Selaginella moellendorffii HOM05D004713 ORTHO05D005658 1.2e-79 300.4 230 64.3
SEGI_32030 Sequoiadendron giganteum HOM05D004713 ORTHO05D005658 2.6e-79 299.3 229 65.9
GSVIVG01000453001 Vitis vinifera HOM05D004713 ORTHO05D005658 5.7e-79 298.1 170 80.0
Mapoly0015s0074 Marchantia polymorpha HOM05D004713 ORTHO05D005658 7.7e-76 287.7 224 64.3
Actinidia18739 Actinidia chinensis HOM05D004713 ORTHO05D005658 2.9e-75 285.8 189 71.4
AagrBONN_evm.TU.Sc2ySwM_228.1073 Anthoceros agrestis HOM05D004713 ORTHO05D005658 8.5e-75 284.3 189 73.0
CDE01G0070 Ceratophyllum demersum HOM05D004713 ORTHO05D005658 3.2e-74 282.3 230 61.7
Pp3c3_35180 Physcomitrium patens HOM05D004713 ORTHO05D005658 3.2e-74 282.3 229 62.9
Pp3c8_1940 Physcomitrium patens HOM05D004713 ORTHO05D005658 2.7e-73 279.3 229 61.6
Lsat_1_v5_gn_7_105940 Lactuca sativa HOM05D004713 ORTHO05D005658 1.8e-69 266.5 235 55.3
CBR_g52397 Chara braunii HOM05D004713 ORTHO05D005658 7.0e-69 264.6 215 61.4
HanXRQChr15g0494521 Helianthus annuus HOM05D004713 ORTHO05D005658 1.5e-63 246.9 231 56.3
ECA236G1690 Erigeron canadensis HOM05D004713 ORTHO05D005658 4.9e-62 241.9 225 54.2
MCO06G171 Micromonas commoda HOM05D004713 ORTHO05D005658 4.5e-60 235.3 205 54.1
Cre11.g467689 Chlamydomonas reinhardtii HOM05D004713 ORTHO05D005658 8.6e-59 231.1 199 54.8
PRCOL_00002197 Prasinoderma coloniale HOM05D004713 ORTHO05D005658 2.3e-51 206.5 183 53.6
CDE12G0380 Ceratophyllum demersum HOM05D004713 ORTHO05D005658 4.0e-48 195.7 146 65.1
Aqoxy1G03926 Aquilegia oxysepala HOM05D004713 ORTHO05D005658 7.0e-45 184.9 99 81.8
Oeu006770.1 Olea europaea HOM05D004713 ORTHO05D005658 1.2e-44 184.1 139 66.9
Actinidia25411 Actinidia chinensis HOM05D004713 ORTHO05D005658 1.2e-41 174.1 133 66.2
unitig_699.g19605 Utricularia gibba HOM05D004713 ORTHO05D005658 1.7e-35 153.7 124 60.5
COL.COLO4_06040 Corchorus olitorius HOM05D004713 ORTHO05D005658 3.0e-27 126.3 94 69.1
RcHm_v2.0_Chr1g0330511 Rosa chinensis HOM05D004713 ORTHO05D005658 1.3e-22 110.9 100 63.0
Lalb_Chr22g0356281 Lupinus albus HOM05D004713 ORTHO05D005658 1.0e-19 101.3 92 60.9
MD10G1189200 Malus domestica HOM05D004713 ORTHO05D005658 1.3e-17 94.4 50 88.0
CSS0001075 Camellia sinensis var. sinensis HOM05D007323 ORTHO05D009238 5.6e-10 68.9 160 36.9
CSS0018719 Camellia sinensis var. sinensis HOM05D007323 ORTHO05D009238 5.6e-10 68.9 160 36.9
SMO271G0135 Selaginella moellendorffii HOM05D014246 ORTHO05D017314 6.2e-09 65.5 44 56.8
Dinv22354 Davidia involucrata HOM05D004713 ORTHO05D182700 3.1e-08 63.2 37 81.1
Pp3c5_14970 Physcomitrium patens HOM05D014246 ORTHO05D017314 5.8e-07 58.9 59 42.4
Cfa023608 Carpinus fangiana HOM05D002681 ORTHO05D003372 1.0e-06 58.2 59 50.8
SEGI_20372 Sequoiadendron giganteum HOM05D014246 ORTHO05D017314 1.0e-06 58.2 59 37.3
Haze_26739 Corylus avellana HOM05D002681 ORTHO05D003372 1.3e-06 57.8 58 46.6
Pp3c16_12490 Physcomitrium patens HOM05D014246 ORTHO05D017314 1.3e-06 57.8 44 52.3
Rhsim08G0039000 Rhododendron simsii HOM05D002681 ORTHO05D000343 1.3e-06 57.8 45 55.6
Sc03g0005250 Simmondsia chinensis HOM05D002681 ORTHO05D003372 3.8e-06 56.2 53 47.2
Cre12.g557350 Chlamydomonas reinhardtii HOM05D014246 ORTHO05D017314 6.4e-06 55.5 44 50.0
Pp3c12_2830 Physcomitrium patens HOM05D002681 ORTHO05D003372 6.4e-06 55.5 63 44.4
SMO117G0364 Selaginella moellendorffii HOM05D002681 ORTHO05D003372 6.4e-06 55.5 43 58.1
MCO16G348 Micromonas commoda HOM05D002681 ORTHO05D003372 8.4e-06 55.1 43 53.5


User provided reference genes

Program Settings