Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g082940 Medicago truncatula HOM05D003177 ORTHO05D003481 4.3e-292 1007.3 524 100.0
TPR.G36746 Trifolium pratense HOM05D003177 ORTHO05D003481 2.3e-224 782.3 525 77.5
Psat5g251840 Pisum sativum HOM05D003177 ORTHO05D003481 1.2e-217 760.0 524 75.6
Ca_01752_v3 Cicer arietinum L. HOM05D003177 ORTHO05D003481 3.0e-184 649.0 445 74.2
Lj3g0022760 Lotus japonicus HOM05D003177 ORTHO05D003481 1.6e-145 520.4 748 44.4
Glyma.12G214200 Glycine max HOM05D003177 ORTHO05D003481 5.4e-141 505.4 755 42.1
Lalb_Chr14g0366151 Lupinus albus HOM05D003177 ORTHO05D003481 1.6e-137 493.8 730 43.2
arahy.Tifrunner.gnm1.ann1.W18Y25 Arachis hypogaea HOM05D003177 ORTHO05D003481 3.5e-124 449.5 770 40.8
arahy.Tifrunner.gnm1.ann1.7VJC80 Arachis hypogaea HOM05D003177 ORTHO05D003481 1.0e-123 448.0 747 41.4
arahy.Tifrunner.gnm1.ann1.P62B18 Arachis hypogaea HOM05D003177 ORTHO05D003481 3.0e-123 446.4 768 40.8
arahy.Tifrunner.gnm1.ann1.Y3PJTZ Arachis hypogaea HOM05D003177 ORTHO05D003481 1.1e-120 438.0 747 40.8
VMungo1080G1398 Vigna mungo HOM05D003177 ORTHO05D003481 1.3e-118 431.0 473 53.7
Lj4g0006066 Lotus japonicus HOM05D003177 ORTHO05D003481 1.5e-111 407.5 645 40.8
arahy.Tifrunner.gnm1.ann1.LTHE3G Arachis hypogaea HOM05D003177 ORTHO05D003481 2.3e-107 393.7 523 48.6
Cfa020414 Carpinus fangiana HOM05D003177 ORTHO05D003481 3.8e-94 349.7 377 48.5
Lj3g0020379 Lotus japonicus HOM05D003177 ORTHO05D003481 1.1e-93 348.2 745 33.7
Dinv22304 Davidia involucrata HOM05D003177 ORTHO05D003481 1.0e-91 341.7 398 45.7
Prupe.4G202300 Prunus persica HOM05D003177 ORTHO05D003481 1.1e-90 338.2 686 33.5
Glyma.06G268800 Glycine max HOM05D003177 ORTHO05D003481 2.6e-87 327.0 701 32.5
Psat7g161600 Pisum sativum HOM05D003177 ORTHO05D003481 1.7e-86 324.3 446 42.6
Lalb_Chr19g0134751 Lupinus albus HOM05D003177 ORTHO05D003481 2.9e-86 323.6 743 31.0
Ca_18849_v3 Cicer arietinum L. HOM05D000068 ORTHO05D000084 3.8e-86 323.2 683 32.1
arahy.Tifrunner.gnm1.ann1.2TAV4H Arachis hypogaea HOM05D003177 ORTHO05D003481 3.2e-85 320.1 750 31.9
Duzib213G0670 Durio zibethinus HOM05D003177 ORTHO05D003481 3.2e-85 320.1 697 31.7
Duzib268G0600 Durio zibethinus HOM05D003177 ORTHO05D003481 1.0e-83 315.1 707 31.7
Gohir.D01G061200 Gossypium hirsutum HOM05D003177 ORTHO05D003481 1.0e-83 315.1 724 31.9
Gorai.002G082600 Gossypium raimondii HOM05D003177 ORTHO05D003481 1.3e-83 314.7 707 32.0
TAR629G1976 Trochodendron aralioides HOM05D003177 ORTHO05D003481 6.7e-83 312.4 747 30.5
Actinidia10706 Actinidia chinensis HOM05D003177 ORTHO05D003481 2.5e-82 310.5 706 30.0
TWI39G1173 Tripterygium wilfordii HOM05D003177 ORTHO05D003481 9.6e-82 308.5 692 29.9
RcHm_v2.0_Chr4g0410111 Rosa chinensis HOM05D003177 ORTHO05D003481 2.1e-81 307.4 371 46.6
arahy.Tifrunner.gnm1.ann1.LL10MS Arachis hypogaea HOM05D003177 ORTHO05D003481 2.8e-81 307.0 775 30.3
Gohir.A01G074600 Gossypium hirsutum HOM05D003177 ORTHO05D003481 3.7e-81 306.6 735 31.3
Potri.001G417400 Populus trichocarpa HOM05D003177 ORTHO05D003481 4.8e-81 306.2 707 29.7
arahy.Tifrunner.gnm1.ann1.JSI4TH Arachis hypogaea HOM05D003177 ORTHO05D003481 1.8e-80 304.3 400 43.8
Haze_09611 Corylus avellana HOM05D003177 ORTHO05D003481 1.8e-80 304.3 431 40.6
QL08p013313 Quercus lobata HOM05D003177 ORTHO05D003481 4.0e-80 303.1 337 47.5
Nn1g03661 Nelumbo nucifera HOM05D003177 ORTHO05D003481 5.3e-80 302.8 370 44.1
MD03G1211600 Malus domestica HOM05D003177 ORTHO05D003481 6.9e-80 302.4 718 30.2
arahy.Tifrunner.gnm1.ann1.2UU78P Arachis hypogaea HOM05D003177 ORTHO05D003481 1.5e-79 301.2 403 44.7
TPR.G25924 Trifolium pratense HOM05D003177 ORTHO05D003481 1.5e-79 301.2 425 41.4
CsaV3_3G022860 Cucumis sativus L. HOM05D003177 ORTHO05D003481 2.9e-78 297.0 386 42.0
MSTRG.14415 Avicennia marina HOM05D003177 ORTHO05D003481 4.9e-78 296.2 363 44.4
Sed0011296 Sechium edule HOM05D003177 ORTHO05D003481 9.3e-77 292.0 467 37.5
ClCG05G014770 Citrullus lanatus HOM05D003177 ORTHO05D003481 2.1e-76 290.8 359 42.1
Phvul.003G295700 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 3.5e-76 290.0 360 43.9
VMungo1127G0088 Vigna mungo HOM05D003177 ORTHO05D003481 7.9e-76 288.9 346 45.1
Phvul.005G091800 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 1.3e-75 288.1 501 38.9
Oeu007628.1 Olea europaea HOM05D003177 ORTHO05D003481 2.5e-74 283.9 385 41.3
Sed0011648 Sechium edule HOM05D003177 ORTHO05D003481 5.7e-74 282.7 408 39.5
Phvul.011G140050 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 7.4e-74 282.3 705 30.6
RcHm_v2.0_Chr5g0037541 Rosa chinensis HOM05D003177 ORTHO05D003481 7.4e-74 282.3 395 44.3
MELO3C018128.2 Cucumis melo HOM05D003177 ORTHO05D003481 9.7e-74 282.0 386 39.1
DCAR_008676 Daucus carota HOM05D003177 ORTHO05D003481 1.3e-73 281.6 606 29.9
Medtr4g081220 Medicago truncatula HOM05D003177 ORTHO05D003481 2.2e-73 280.8 397 42.3
Potri.011G133100 Populus trichocarpa HOM05D003177 ORTHO05D003481 8.2e-73 278.9 329 43.5
Manes.03G122901 Manihot esculenta HOM05D003177 ORTHO05D003481 1.8e-72 277.7 266 50.0
Migut.H01856 Erythranthe guttata HOM05D003177 ORTHO05D003481 4.1e-72 276.6 350 42.0
vmacro11767 Vaccinium macrocarpon HOM05D003177 ORTHO05D003481 6.9e-72 275.8 342 41.8
Thecc.07G052500 Theobroma cacao HOM05D003177 ORTHO05D003481 1.5e-71 274.6 360 42.5
Sopen07g032250 Solanum pennellii HOM05D003177 ORTHO05D003481 2.6e-71 273.9 406 39.7
Solyc07g064110.3 Solanum lycopersicum HOM05D003177 ORTHO05D003481 1.0e-70 271.9 377 39.8
Eucgr.F03427 Eucalyptus grandis HOM05D003177 ORTHO05D003481 1.7e-70 271.2 341 42.5
Sabra16G0283700 Salix brachista HOM05D003177 ORTHO05D003481 5.0e-70 269.6 400 37.0
CANSAT11G2707 Cannabis sativa HOM05D003177 ORTHO05D003481 1.1e-69 268.5 337 42.1
FAN21G3709 Fragaria x ananassa HOM05D003177 ORTHO05D003481 5.5e-69 266.2 321 45.8
FvH4_3g21820 Fragaria vesca HOM05D003177 ORTHO05D003481 9.3e-69 265.4 321 45.8
SGA_v2.0_scaffold9G05037 Striga asiatica HOM05D003177 ORTHO05D003481 1.4e-67 261.5 384 38.5
Duzib213G0184 Durio zibethinus HOM05D003177 ORTHO05D003481 3.0e-67 260.4 408 39.0
FAN25G3665 Fragaria x ananassa HOM05D003177 ORTHO05D003481 5.1e-67 259.6 321 45.5
FvH4_7g08040 Fragaria vesca HOM05D003177 ORTHO05D003481 2.5e-66 257.3 296 48.3
Cc05_g13250 Coffea canephora HOM05D003177 ORTHO05D003481 7.4e-66 255.8 380 38.4
FAN03G0141 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.3e-65 255.0 296 47.6
FAN10G2257 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.3e-65 255.0 305 46.9
FAN01G1176 Fragaria x ananassa HOM05D003177 ORTHO05D003481 2.2e-65 254.2 296 48.0
Aqoxy4G02069 Aquilegia oxysepala HOM05D003177 ORTHO05D003481 3.7e-65 253.4 395 38.2
FAN06G1056 Fragaria x ananassa HOM05D003177 ORTHO05D003481 6.3e-65 252.7 296 48.0
CAN.G337.147 Capsicum annuum HOM05D003177 ORTHO05D003481 8.2e-65 252.3 431 36.2
ATR0794G044 Amborella trichopoda HOM05D003177 ORTHO05D003481 2.6e-63 247.3 384 37.5
HanXRQChr05g0159201 Helianthus annuus HOM05D003177 ORTHO05D003481 7.7e-63 245.7 381 38.3
ECA246G0280 Erigeron canadensis HOM05D003177 ORTHO05D003481 1.7e-62 244.6 308 40.9
THA.LOC104813041 Tarenaya hassleriana HOM05D003177 ORTHO05D003481 2.2e-62 244.2 389 37.3
CAN.G337.89 Capsicum annuum HOM05D003177 ORTHO05D003481 2.9e-62 243.8 432 35.6
CsaV3_UNG228980 Cucumis sativus L. HOM05D003177 ORTHO05D003481 3.8e-62 243.4 322 41.3
FAN11G2546 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.1e-61 241.9 371 39.6
Lsat_1_v5_gn_5_5721 Lactuca sativa HOM05D003177 ORTHO05D003481 3.2e-61 240.4 325 39.7
Nitab4.5_0000397g0040 Nicotiana tabacum HOM05D003177 ORTHO05D003481 4.2e-61 240.0 306 37.9
EL10Ac4g07970 Beta vulgaris HOM05D003177 ORTHO05D003481 7.2e-61 239.2 340 38.2
Ciclev10008319m.g Citrus clementina HOM05D003177 ORTHO05D003481 4.7e-60 236.5 293 42.7
CiPaw.11G183800 Carya illinoinensis HOM05D003177 ORTHO05D003481 1.0e-59 235.3 569 29.5
Ciclev10008519m.g Citrus clementina HOM05D003177 ORTHO05D003481 2.3e-59 234.2 293 43.0
COL.COLO4_09572 Corchorus olitorius HOM05D003177 ORTHO05D003481 3.9e-59 233.4 645 29.1
Nitab4.5_0009192g0010 Nicotiana tabacum HOM05D003177 ORTHO05D003481 3.3e-58 230.3 320 37.8
Peaxi162Scf01086g00156 Petunia axillaris HOM05D003177 ORTHO05D003481 3.7e-57 226.9 380 34.7
PSO541G2106 Papaver somniferum HOM05D003177 ORTHO05D003481 4.8e-57 226.5 294 39.1
PGR031G3084 Punica granatum HOM05D003177 ORTHO05D003481 6.5e-54 216.1 377 36.3
Zm00001eb231370 Zea mays HOM05D003177 ORTHO05D003481 8.5e-54 215.7 288 37.5
CARHR252740 Cardamine hirsuta HOM05D003177 ORTHO05D003481 1.9e-53 214.5 375 34.9
BcaNung02254 Brassica carinata HOM05D003177 ORTHO05D003481 7.2e-53 212.6 287 38.7
Carub.0006s3271 Capsella rubella HOM05D003177 ORTHO05D003481 1.2e-52 211.8 310 35.5
A01p13180 Brassica napus HOM05D003177 ORTHO05D003481 2.7e-52 210.7 287 38.0
BraA01t01262Z Brassica rapa HOM05D003177 ORTHO05D003481 2.7e-52 210.7 287 38.0
Thhalv10028431m.g Eutrema salsugineum HOM05D003177 ORTHO05D003481 2.7e-52 210.7 290 38.6
AUR62020553 Chenopodium quinoa HOM05D003177 ORTHO05D003481 1.0e-51 208.8 325 36.3
BcaC09g51192 Brassica carinata HOM05D003177 ORTHO05D003481 3.9e-51 206.8 287 37.6
C01p15880 Brassica napus HOM05D003177 ORTHO05D003481 3.9e-51 206.8 287 37.6
Sp6g04150 Schrenkiella parvula HOM05D003177 ORTHO05D003481 6.7e-51 206.1 375 33.3
BolC9t56146H Brassica oleracea HOM05D003177 ORTHO05D003481 1.1e-50 205.3 376 33.2
Cpa.g.sc97.66 Carica papaya HOM05D003177 ORTHO05D003481 2.6e-50 204.1 232 44.4
Ah.06g183030 Amaranthus hybridus HOM05D003177 ORTHO05D003481 7.4e-50 202.6 304 37.5
AT4G04790 Arabidopsis thaliana HOM05D003177 ORTHO05D003481 7.4e-50 202.6 372 32.8
BcaC04g21326 Brassica carinata HOM05D003177 ORTHO05D003481 7.4e-50 202.6 376 34.0
C09p33110 Brassica napus HOM05D003177 ORTHO05D003481 7.4e-50 202.6 376 34.0
AL6G48280 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 9.7e-50 202.2 296 36.8
BolC1t01542H Brassica oleracea HOM05D003177 ORTHO05D003481 9.7e-50 202.2 292 37.3
Medtr7g007510 Medicago truncatula HOM05D003177 ORTHO05D003481 2.2e-49 201.1 297 40.1
A09p26090 Brassica napus HOM05D003177 ORTHO05D003481 2.8e-49 200.7 378 33.1
BraA09t38176Z Brassica rapa HOM05D003177 ORTHO05D003481 2.8e-49 200.7 380 32.9
AL7G32020 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 1.1e-48 198.7 288 37.5
Os02g0132600 Oryza sativa ssp. japonica HOM05D003177 ORTHO05D003481 1.4e-48 198.4 366 33.1
Sp7g20030 Schrenkiella parvula HOM05D003177 ORTHO05D003481 2.4e-48 197.6 288 37.5
SHI50408 Sapria himalayana HOM05D003177 ORTHO05D003481 4.1e-48 196.8 252 40.1
PSO675G6436 Papaver somniferum HOM05D003177 ORTHO05D003481 7.0e-48 196.1 395 32.2
AT4G21880 Arabidopsis thaliana HOM05D003177 ORTHO05D003481 3.5e-47 193.7 288 36.5
HPP92_004136 Vanilla planifolia HOM05D003177 ORTHO05D003481 4.5e-47 193.4 298 34.2
BcaB01g01838 Brassica carinata HOM05D003177 ORTHO05D003481 2.2e-46 191.0 335 33.7
Sc19g0005960 Simmondsia chinensis HOM05D003177 ORTHO05D003481 2.9e-46 190.7 256 41.4
AUR62015646 Chenopodium quinoa HOM05D003177 ORTHO05D003481 2.5e-45 187.6 406 31.3
Thhalv10024397m.g Eutrema salsugineum HOM05D003177 ORTHO05D003481 2.5e-45 187.6 374 32.9
FAN21G1934 Fragaria x ananassa HOM05D003177 ORTHO05D003481 5.5e-45 186.4 257 40.1
Aa31LG9G9680 Aethionema arabicum HOM05D003177 ORTHO05D003481 7.2e-45 186.0 324 33.0
FvH4_3g43180 Fragaria vesca HOM05D003177 ORTHO05D003481 1.2e-44 185.3 248 40.3
CARHR228640 Cardamine hirsuta HOM05D003177 ORTHO05D003481 1.6e-44 184.9 289 35.3
Carub.0007s1949 Capsella rubella HOM05D003177 ORTHO05D003481 2.1e-44 184.5 313 33.5
FvH4_3g43110 Fragaria vesca HOM05D003177 ORTHO05D003481 2.7e-44 184.1 248 39.5
Medtr4g081210 Medicago truncatula HOM05D003177 ORTHO05D003481 1.8e-43 181.4 332 34.9
CDE12G0466 Ceratophyllum demersum HOM05D003177 ORTHO05D003481 4.0e-43 180.3 178 47.2
Glyma.13G287400 Glycine max HOM05D003177 ORTHO05D003481 2.8e-41 174.1 439 32.6
Hma1.2p1_1546F.1_g289980 Hydrangea macrophylla HOM05D003177 ORTHO05D003481 7.0e-40 169.5 207 40.6
PSO478G2228 Papaver somniferum HOM05D003177 ORTHO05D003481 1.0e-38 165.6 257 35.8
FAN21G2694 Fragaria x ananassa HOM05D003177 ORTHO05D003481 2.9e-38 164.1 201 45.3
GSVIVG01014607001 Vitis vinifera HOM05D003177 ORTHO05D003481 7.2e-37 159.5 189 46.6
Glyma.U031131 Glycine max HOM05D003177 ORTHO05D003481 9.4e-37 159.1 150 56.7
Medtr7g025580 Medicago truncatula HOM05D003177 ORTHO05D003481 8.3e-33 146.0 224 42.0
FvH4_3g42340 Fragaria vesca HOM05D003177 ORTHO05D003481 5.4e-32 143.3 251 36.3
FvH4_3g42560 Fragaria vesca HOM05D003177 ORTHO05D003481 5.4e-32 143.3 251 35.9
Medtr7g025530 Medicago truncatula HOM05D003177 ORTHO05D003481 5.4e-32 143.3 196 44.4
AL1G67350 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 1.1e-29 135.6 232 34.9
AL1G67370 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 1.5e-29 135.2 270 29.6
FAN11G0113 Fragaria x ananassa HOM05D003177 ORTHO05D003481 5.2e-27 126.7 284 32.0
SEGI_03301 Sequoiadendron giganteum HOM05D003177 ORTHO05D003481 1.3e-25 122.1 165 33.9
Glyma.U031231 Glycine max HOM05D003177 ORTHO05D003481 4.9e-25 120.2 177 37.9
FAN28G1104 Fragaria x ananassa HOM05D003177 ORTHO05D003481 8.3e-25 119.4 295 31.2
FAN11G2904 Fragaria x ananassa HOM05D003177 ORTHO05D003481 7.0e-24 116.3 295 30.5
unitig_749.g13972 Utricularia gibba HOM05D003177 ORTHO05D003481 9.2e-24 115.9 330 27.0
FAN16G1316 Fragaria x ananassa HOM05D003177 ORTHO05D003481 4.5e-23 113.6 167 36.5
VMungo1127G0069 Vigna mungo HOM05D003177 ORTHO05D003481 2.9e-22 110.9 185 41.6
QL08p013320 Quercus lobata HOM05D003177 ORTHO05D003481 4.3e-21 107.1 142 44.4
Glyma.12G135500 Glycine max HOM05D003177 ORTHO05D003481 7.3e-21 106.3 118 50.8
Actinidia35317 Actinidia chinensis HOM05D003177 ORTHO05D003481 2.1e-20 104.8 226 33.2
BcaC09g51195 Brassica carinata HOM05D003177 ORTHO05D003481 4.7e-20 103.6 231 29.4
Cpa.g.sc97.68 Carica papaya HOM05D003177 ORTHO05D003481 4.7e-20 103.6 117 50.4
Sc19g0005940 Simmondsia chinensis HOM05D003177 ORTHO05D003481 4.7e-20 103.6 122 48.4
Ciclev10008545m.g Citrus clementina HOM05D003177 ORTHO05D003481 5.2e-19 100.1 135 43.0
CSS0012105 Camellia sinensis var. sinensis HOM05D003177 ORTHO05D003481 8.9e-19 99.4 159 37.1
RcHm_v2.0_Chr5g0037561 Rosa chinensis HOM05D003177 ORTHO05D003481 2.2e-17 94.7 138 42.8
Lj1C863T22 Lonicera japonica HOM05D003177 ORTHO05D003481 1.1e-16 92.4 142 41.5
FvH4_3g41772 Fragaria vesca HOM05D003177 ORTHO05D003481 2.7e-15 87.8 231 28.6
Eucgr.G00523 Eucalyptus grandis HOM05D003177 ORTHO05D003481 7.8e-15 86.3 128 41.4
unitig_26.g9968 Utricularia gibba HOM05D003177 ORTHO05D003481 5.6e-13 80.1 103 40.8
PGSC0003DMG400019225 Solanum tuberosum HOM05D003177 ORTHO05D003481 2.3e-11 74.7 117 37.6
arahy.Tifrunner.gnm1.ann1.C6RLDL Arachis hypogaea HOM05D003177 ORTHO05D003481 6.8e-11 73.2 74 48.6
arahy.Tifrunner.gnm1.ann1.P5VPT7 Arachis hypogaea HOM05D003177 ORTHO05D003481 8.9e-11 72.8 111 41.4
CDE12G0546 Ceratophyllum demersum HOM05D003177 ORTHO05D003481 2.0e-10 71.6 115 35.7
arahy.Tifrunner.gnm1.ann1.BRX1G6 Arachis hypogaea HOM05D003177 ORTHO05D003481 2.2e-09 68.2 116 38.8
FAN11G0078 Fragaria x ananassa HOM05D003177 ORTHO05D003481 2.2e-09 68.2 119 37.8
SEGI_25291 Sequoiadendron giganteum HOM05D003177 ORTHO05D003481 3.2e-08 64.3 117 32.5
CsaV3_UNG228990 Cucumis sativus L. HOM05D003177 ORTHO05D003481 6.0e-07 60.1 60 48.3
Phvul.005G091700 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 8.6e-06 56.2 60 56.7


User provided reference genes

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