Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g062860 Medicago truncatula HOM05D005429 ORTHO05D006697 6.2e-66 254.2 151 100.0
Psat1g130720 Pisum sativum HOM05D005429 ORTHO05D006697 8.4e-63 243.8 149 95.3
TPR.G39484 Trifolium pratense HOM05D005429 ORTHO05D006697 8.7e-60 233.8 151 90.7
Ca_03324_v3 Cicer arietinum L. HOM05D005429 ORTHO05D006697 1.1e-59 233.4 151 92.1
VMungo1080G0054 Vigna mungo HOM05D005429 ORTHO05D006697 1.6e-58 229.6 128 93.0
Glyma.08G160100 Glycine max HOM05D005429 ORTHO05D006697 6.2e-58 227.6 130 92.3
LjContig00222g0019384 Lotus japonicus HOM05D005429 ORTHO05D006697 1.1e-57 226.9 158 88.0
Phvul.005G043700 Phaseolus vulgaris HOM05D005429 ORTHO05D006697 2.4e-57 225.7 128 91.4
Glyma.15G204300 Glycine max HOM05D005429 ORTHO05D006697 4.0e-57 224.9 130 91.5
Lalb_Chr01g0015641 Lupinus albus HOM05D005429 ORTHO05D006697 2.6e-56 222.2 128 92.2
arahy.Tifrunner.gnm1.ann1.WT0EG6 Arachis hypogaea HOM05D005429 ORTHO05D006697 9.9e-56 220.3 128 90.6
arahy.Tifrunner.gnm1.ann1.9U3PF1 Arachis hypogaea HOM05D005429 ORTHO05D006697 7.1e-54 214.2 122 92.6
GSVIVG01036692001 Vitis vinifera HOM05D005429 ORTHO05D006697 1.2e-53 213.4 151 86.8
Prupe.7G260300 Prunus persica HOM05D005429 ORTHO05D006697 1.1e-51 206.8 130 86.2
TWI18G1141 Tripterygium wilfordii HOM05D005429 ORTHO05D006697 4.3e-51 204.9 130 83.8
CSS0004524 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 9.6e-51 203.8 128 85.9
Eucgr.C03287 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.6e-50 203.0 121 90.1
Actinidia23548 Actinidia chinensis HOM05D005429 ORTHO05D006697 2.8e-50 202.2 128 85.9
CiPaw.05G164700 Carya illinoinensis HOM05D005429 ORTHO05D006697 2.8e-50 202.2 125 85.6
CSS0015948 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 3.7e-50 201.8 127 85.8
CSS0034504 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 3.7e-50 201.8 127 85.8
Eucgr.C04279 Eucalyptus grandis HOM05D005429 ORTHO05D006697 3.7e-50 201.8 121 90.1
Rhsim03G0256400 Rhododendron simsii HOM05D005429 ORTHO05D006697 3.7e-50 201.8 129 86.8
Rhsim10G0195600 Rhododendron simsii HOM05D005429 ORTHO05D006697 3.7e-50 201.8 129 86.8
Eucgr.F00079 Eucalyptus grandis HOM05D005429 ORTHO05D006697 4.8e-50 201.4 121 89.3
Potri.008G080700 Populus trichocarpa HOM05D005429 ORTHO05D006697 4.8e-50 201.4 130 83.1
ClCG11G011870 Citrullus lanatus HOM05D005429 ORTHO05D006697 8.1e-50 200.7 147 81.0
Dinv42877 Davidia involucrata HOM05D005429 ORTHO05D006697 1.8e-49 199.5 130 84.6
Dinv43223 Davidia involucrata HOM05D005429 ORTHO05D006697 1.8e-49 199.5 130 84.6
CsaV3_1G046300 Cucumis sativus L. HOM05D005429 ORTHO05D006697 2.4e-49 199.1 147 80.3
Gohir.D02G066500 Gossypium hirsutum HOM05D005429 ORTHO05D006697 4.0e-49 198.4 144 85.4
QL11p022585 Quercus lobata HOM05D005429 ORTHO05D006697 4.0e-49 198.4 122 86.9
Aqoxy3G02759 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 6.9e-49 197.6 125 85.6
MELO3C021751.2 Cucumis melo HOM05D005429 ORTHO05D006697 6.9e-49 197.6 147 81.0
Duzib116G0688 Durio zibethinus HOM05D005429 ORTHO05D006697 6.9e-49 197.6 121 86.8
TAR624G1317 Trochodendron aralioides HOM05D005429 ORTHO05D006697 9.0e-49 197.2 125 85.6
Gorai.005G075400 Gossypium raimondii HOM05D005429 ORTHO05D006697 1.2e-48 196.8 144 84.7
Ciclev10022715m.g Citrus clementina HOM05D005429 ORTHO05D006697 2.0e-48 196.1 127 82.7
COL.COLO4_05834 Corchorus olitorius HOM05D005429 ORTHO05D006697 2.0e-48 196.1 119 87.4
vmacro06089 Vaccinium macrocarpon HOM05D005429 ORTHO05D006697 2.6e-48 195.7 144 87.5
Cc02_g22920 Coffea canephora HOM05D005429 ORTHO05D006697 5.8e-48 194.5 121 86.8
Nitab4.5_0009812g0020 Nicotiana tabacum HOM05D005429 ORTHO05D006697 5.8e-48 194.5 148 83.8
PGR083G0776 Punica granatum HOM05D005429 ORTHO05D006697 5.8e-48 194.5 130 82.3
Thecc.05G251100 Theobroma cacao HOM05D005429 ORTHO05D006697 5.8e-48 194.5 123 83.7
Cfa010706 Carpinus fangiana HOM05D005429 ORTHO05D006697 7.6e-48 194.1 127 81.9
THA.LOC104812397 Tarenaya hassleriana HOM05D005429 ORTHO05D006697 1.0e-47 193.7 127 81.1
Dinv44073 Davidia involucrata HOM05D005429 ORTHO05D006697 2.2e-47 192.6 128 82.8
Gohir.A02G061000 Gossypium hirsutum HOM05D005429 ORTHO05D006697 2.2e-47 192.6 120 85.8
Nitab4.5_0000548g0210 Nicotiana tabacum HOM05D005429 ORTHO05D006697 2.2e-47 192.6 149 82.6
EL10Ac5g12584 Beta vulgaris HOM05D005429 ORTHO05D006697 3.8e-47 191.8 152 79.6
AUR62006203 Chenopodium quinoa HOM05D005429 ORTHO05D006697 3.8e-47 191.8 150 80.0
AUR62030412 Chenopodium quinoa HOM05D005429 ORTHO05D006697 3.8e-47 191.8 129 79.1
Lj7A456T20 Lonicera japonica HOM05D005429 ORTHO05D006697 4.9e-47 191.4 149 82.6
Manes.03G077300 Manihot esculenta HOM05D005429 ORTHO05D006697 4.9e-47 191.4 130 79.2
Thecc.08G200900 Theobroma cacao HOM05D005429 ORTHO05D006697 8.4e-47 190.7 123 82.1
Cpa.g.sc16.3 Carica papaya HOM05D005429 ORTHO05D006697 1.4e-46 189.9 125 80.8
Sed0018631 Sechium edule HOM05D005429 ORTHO05D006697 1.4e-46 189.9 121 83.5
MSTRG.26291 Avicennia marina HOM05D005429 ORTHO05D006697 1.9e-46 189.5 130 78.5
Nn4g23117 Nelumbo nucifera HOM05D005429 ORTHO05D006697 1.9e-46 189.5 123 84.6
Sc16g0002320 Simmondsia chinensis HOM05D005429 ORTHO05D006697 4.2e-46 188.3 124 80.6
Atru.chr3.2997 Acer truncatum HOM05D005429 ORTHO05D006697 5.5e-46 188.0 161 70.2
DCAR_027354 Daucus carota HOM05D005429 ORTHO05D006697 5.5e-46 188.0 144 81.9
Solyc03g083300.3 Solanum lycopersicum HOM05D005429 ORTHO05D006697 9.3e-46 187.2 123 80.5
Sopen03g023050 Solanum pennellii HOM05D005429 ORTHO05D006697 9.3e-46 187.2 123 80.5
PGSC0003DMG400009083 Solanum tuberosum HOM05D005429 ORTHO05D006697 1.2e-45 186.8 123 80.5
PSO384G3609 Papaver somniferum HOM05D005429 ORTHO05D006697 1.6e-45 186.4 153 75.8
Aa31LG7G970 Aethionema arabicum HOM05D005429 ORTHO05D006697 2.1e-45 186.0 127 76.4
ECA238G3108 Erigeron canadensis HOM05D005429 ORTHO05D006697 6.0e-45 184.5 149 77.2
Sp1g14580 Schrenkiella parvula HOM05D005429 ORTHO05D006697 1.0e-44 183.7 127 76.4
PSO210G6955 Papaver somniferum HOM05D005429 ORTHO05D006697 1.8e-44 183.0 153 72.5
Sabra08G0060000 Salix brachista HOM05D005429 ORTHO05D006697 2.3e-44 182.6 126 77.0
Hund11041 Selenicereus undatus HOM05D005429 ORTHO05D006697 2.3e-44 182.6 131 75.6
SGA_v2.0_scaffold147G36309 Striga asiatica HOM05D005429 ORTHO05D006697 2.3e-44 182.6 121 80.2
Lsat_1_v5_gn_2_59100 Lactuca sativa HOM05D005429 ORTHO05D006697 3.9e-44 181.8 128 76.6
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 6.7e-44 181.0 123 81.3
CARHR016900 Cardamine hirsuta HOM05D005429 ORTHO05D006697 8.7e-44 180.6 127 74.0
RcHm_v2.0_Chr5g0022991 Rosa chinensis HOM05D005429 ORTHO05D006697 8.7e-44 180.6 120 79.2
HPP92_024623 Vanilla planifolia HOM05D005429 ORTHO05D006697 8.7e-44 180.6 123 76.4
Ah.04g163250 Amaranthus hybridus HOM05D005429 ORTHO05D006697 1.1e-43 180.3 122 77.9
AL1G28560 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 1.9e-43 179.5 127 72.4
AT1G16430 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 1.9e-43 179.5 126 73.8
BcaC05g25573 Brassica carinata HOM05D005429 ORTHO05D006697 1.9e-43 179.5 127 74.0
C05p14630 Brassica napus HOM05D005429 ORTHO05D006697 1.9e-43 179.5 127 74.0
BolC5t30184H Brassica oleracea HOM05D005429 ORTHO05D006697 1.9e-43 179.5 127 74.0
PSO832G0230 Papaver somniferum HOM05D005429 ORTHO05D006697 1.9e-43 179.5 153 69.9
BcaB02g06622 Brassica carinata HOM05D005429 ORTHO05D006697 2.5e-43 179.1 127 74.8
BraA06t24400Z Brassica rapa HOM05D005429 ORTHO05D006697 2.5e-43 179.1 127 74.0
CANSAT56G3386 Cannabis sativa HOM05D005429 ORTHO05D006697 2.5e-43 179.1 124 74.2
Carub.0001s0730 Capsella rubella HOM05D005429 ORTHO05D006697 2.5e-43 179.1 127 73.2
AT1G07950 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 3.3e-43 178.7 127 73.2
HanXRQChr14g0437971 Helianthus annuus HOM05D005429 ORTHO05D006697 3.3e-43 178.7 119 79.0
A06p12360 Brassica napus HOM05D005429 ORTHO05D006697 4.3e-43 178.3 127 73.2
Migut.N01785 Erythranthe guttata HOM05D005429 ORTHO05D006697 4.3e-43 178.3 125 76.0
PSO339G4006 Papaver somniferum HOM05D005429 ORTHO05D006697 4.3e-43 178.3 150 72.0
CDE02G4404 Ceratophyllum demersum HOM05D005429 ORTHO05D006697 7.4e-43 177.6 123 75.6
Peaxi162Scf03254g00010 Petunia axillaris HOM05D005429 ORTHO05D006697 1.6e-42 176.4 123 80.5
AL1G18280 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 2.8e-42 175.6 122 75.4
FvH4_3g13800 Fragaria vesca HOM05D005429 ORTHO05D006697 2.4e-41 172.6 120 75.8
FAN11G0784 Fragaria x ananassa HOM05D005429 ORTHO05D006697 2.4e-41 172.6 120 75.8
SGA_v2.0_scaffold19G08578 Striga asiatica HOM05D005429 ORTHO05D006697 2.4e-41 172.6 116 78.4
Thhalv10008938m.g Eutrema salsugineum HOM05D005429 ORTHO05D006697 4.1e-41 171.8 136 69.1
FAN16G2737 Fragaria x ananassa HOM05D005429 ORTHO05D006697 5.3e-41 171.4 120 75.8
FAN21G1331 Fragaria x ananassa HOM05D005429 ORTHO05D006697 5.3e-41 171.4 120 75.8
unitig_749.g13420 Utricularia gibba HOM05D005429 ORTHO05D006697 1.2e-40 170.2 119 72.3
FAN25G2434 Fragaria x ananassa HOM05D005429 ORTHO05D006697 1.5e-40 169.9 120 75.0
Carub.0001s1617 Capsella rubella HOM05D005429 ORTHO05D006697 7.6e-40 167.5 126 71.4
Peaxi162Scf00003g03942 Petunia axillaris HOM05D005429 ORTHO05D006697 1.0e-39 167.2 123 76.4
QL02p100061 Quercus lobata HOM05D005429 ORTHO05D006697 1.3e-39 166.8 193 54.9
Hma1.2p1_0817F.1_g223090 Hydrangea macrophylla HOM05D005429 ORTHO05D006697 5.0e-39 164.9 129 74.4
Haze_03266 Corylus avellana HOM05D005429 ORTHO05D006697 8.5e-39 164.1 206 51.5
Eucgr.C04273 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.9e-38 162.9 95 89.5
SEGI_11251 Sequoiadendron giganteum HOM05D005429 ORTHO05D006697 2.5e-38 162.5 123 68.3
DCAR_014816 Daucus carota HOM05D005429 ORTHO05D006697 5.5e-38 161.4 143 63.6
MD02G1009700 Malus domestica HOM05D005429 ORTHO05D006697 7.2e-38 161.0 129 69.0
ATR0019G018 Amborella trichopoda HOM05D005429 ORTHO05D006697 2.3e-36 156.0 123 68.3
unitig_26.g9672 Utricularia gibba HOM05D005429 ORTHO05D006697 3.0e-36 155.6 137 70.1
Os08g0480500 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 1.1e-35 153.7 147 63.9
QL04p071374 Quercus lobata HOM05D005429 ORTHO05D006697 1.1e-35 153.7 96 86.5
Oeu051694.1 Olea europaea HOM05D005429 ORTHO05D006697 7.4e-35 151.0 101 79.2
Peaxi162Scf00003g04025 Petunia axillaris HOM05D005429 ORTHO05D006697 1.3e-34 150.2 99 82.8
Haze_03271 Corylus avellana HOM05D005429 ORTHO05D001402 1.6e-34 149.8 102 78.4
Mapoly0161s0019 Marchantia polymorpha HOM05D005429 ORTHO05D006697 6.3e-34 147.9 125 60.8
Zm00001eb335330 Zea mays HOM05D005429 ORTHO05D006697 2.4e-33 146.0 123 63.4
Peaxi162Scf03393g00016 Petunia axillaris HOM05D005429 ORTHO05D006697 8.5e-31 137.5 90 83.3
Pp3c20_1390 Physcomitrium patens HOM05D005429 ORTHO05D006697 8.5e-31 137.5 125 56.0
Pp3c24_19620 Physcomitrium patens HOM05D005429 ORTHO05D006697 5.5e-30 134.8 123 56.1
Aqoxy3G02314 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 1.6e-29 133.3 83 85.5
Os01g0132700 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 4.6e-29 131.7 126 54.8
SMO141G0142 Selaginella moellendorffii HOM05D005429 ORTHO05D006697 6.7e-28 127.9 122 54.9
AagrBONN_evm.TU.Sc2ySwM_117.1673 Anthoceros agrestis HOM05D005429 ORTHO05D006697 3.7e-26 122.1 123 51.2
Oeu050474.1 Olea europaea HOM05D005429 ORTHO05D006697 1.0e-23 114.0 81 74.1
CAN.G1618.6 Capsicum annuum HOM05D005429 ORTHO05D006697 1.9e-22 109.8 93 61.3
CAN.G584.55 Capsicum annuum HOM05D005429 ORTHO05D006697 1.9e-22 109.8 93 61.3
Eucgr.L02967 Eucalyptus grandis HOM05D005429 ORTHO05D006697 3.2e-22 109.0 103 62.1
Eucgr.C04269 Eucalyptus grandis HOM05D005429 ORTHO05D006697 3.7e-18 95.5 95 62.1
Peaxi162Scf03393g00018 Petunia axillaris HOM05D005429 ORTHO05D006697 3.5e-16 89.0 64 73.4
Zm00001eb228470 Zea mays HOM05D005429 ORTHO05D006697 3.6e-13 79.0 51 70.6
SGA_v2.0_scaffold19G08613 Striga asiatica HOM05D005429 ORTHO05D006697 3.7e-10 68.9 70 62.9
SGA_v2.0_scaffold19G08607 Striga asiatica HOM05D005429 ORTHO05D006697 1.1e-09 67.4 83 55.4
SGA_v2.0_scaffold711G53500 Striga asiatica HOM05D005429 ORTHO05D006697 1.1e-09 67.4 83 55.4
Peaxi162Scf00003g04026 Petunia axillaris HOM05D000011 ORTHO05D011267 1.5e-06 57.0 46 65.2


User provided reference genes

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