Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g049300 Medicago truncatula HOM05D004841 ORTHO05D005874 2.6e-189 665.2 339 100.0
Psat1g020080 Pisum sativum HOM05D004841 ORTHO05D005874 2.2e-172 609.0 339 90.3
Ca_03447_v3 Cicer arietinum L. HOM05D004841 ORTHO05D005874 1.6e-170 602.8 340 89.4
TPR.G29935 Trifolium pratense HOM05D004841 ORTHO05D005874 8.2e-167 590.5 336 88.1
Lj6g0003285 Lotus japonicus HOM05D004841 ORTHO05D005874 8.8e-145 517.3 332 78.0
arahy.Tifrunner.gnm1.ann1.4L8DWS Arachis hypogaea HOM05D004841 ORTHO05D005874 1.1e-139 500.4 331 76.7
arahy.Tifrunner.gnm1.ann1.0DR3QG Arachis hypogaea HOM05D004841 ORTHO05D005874 7.2e-139 497.7 331 76.7
arahy.Tifrunner.gnm1.ann1.9IA9LY Arachis hypogaea HOM05D004841 ORTHO05D005874 6.1e-138 494.6 315 79.0
Lalb_Chr11g0073321 Lupinus albus HOM05D004841 ORTHO05D005874 6.1e-138 494.6 334 74.6
arahy.Tifrunner.gnm1.ann1.V1DCF9 Arachis hypogaea HOM05D004841 ORTHO05D005874 4.4e-136 488.4 315 78.4
Glyma.15G195000 Glycine max HOM05D004841 ORTHO05D005874 8.6e-132 474.2 327 74.6
Glyma.09G086200 Glycine max HOM05D004841 ORTHO05D005874 4.7e-130 468.4 320 74.1
Phvul.009G215400 Phaseolus vulgaris HOM05D004841 ORTHO05D005874 1.0e-129 467.2 334 70.7
VMungo1309G2918 Vigna mungo HOM05D004841 ORTHO05D005874 1.4e-129 466.8 321 73.8
Sed0021741 Sechium edule HOM05D004841 ORTHO05D005874 1.3e-124 450.3 338 68.0
GSVIVG01034157001 Vitis vinifera HOM05D004841 ORTHO05D005874 6.6e-124 448.0 321 70.1
Hma1.2p1_0594F.1_g185890 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 4.3e-123 445.3 335 67.2
CiPaw.09G120900 Carya illinoinensis HOM05D004841 ORTHO05D005874 9.5e-123 444.1 335 66.9
CSS0019612 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 5.2e-121 438.3 341 66.0
CSS0027900 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 5.2e-121 438.3 341 66.0
Manes.17G073300 Manihot esculenta HOM05D004841 ORTHO05D005874 1.2e-120 437.2 327 66.1
QL05p055481 Quercus lobata HOM05D004841 ORTHO05D005874 2.0e-120 436.4 326 69.0
Rhsim13G0116700 Rhododendron simsii HOM05D004841 ORTHO05D005874 4.4e-120 435.3 327 68.5
Atru.chr10.1099 Acer truncatum HOM05D004841 ORTHO05D005874 2.2e-119 433.0 337 66.2
CiPaw.10G089600 Carya illinoinensis HOM05D004841 ORTHO05D005874 2.2e-119 433.0 332 66.3
Prupe.4G084200 Prunus persica HOM05D004841 ORTHO05D005874 3.7e-119 432.2 333 67.0
Gohir.A10G042800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 8.3e-119 431.0 332 66.0
Duzib235G0160 Durio zibethinus HOM05D004841 ORTHO05D005874 2.4e-118 429.5 332 65.7
Gohir.D10G043800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 2.4e-118 429.5 332 65.4
Gorai.011G046600 Gossypium raimondii HOM05D004841 ORTHO05D005874 2.4e-118 429.5 332 65.4
PGR031G1170 Punica granatum HOM05D004841 ORTHO05D005874 2.4e-118 429.5 327 67.3
MSTRG.7507 Avicennia marina HOM05D004841 ORTHO05D005874 3.2e-118 429.1 327 65.7
Cfa000914 Carpinus fangiana HOM05D004841 ORTHO05D005874 4.1e-118 428.7 335 65.7
Lsat_1_v5_gn_4_29561 Lactuca sativa HOM05D004841 ORTHO05D005874 4.1e-118 428.7 332 66.0
MD05G1280700 Malus domestica HOM05D004841 ORTHO05D005874 4.6e-117 425.2 327 64.8
TWI63G0939 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 4.6e-117 425.2 338 64.2
MELO3C007114.2 Cucumis melo HOM05D004841 ORTHO05D005874 6.0e-117 424.9 337 65.0
Eucgr.E02427 Eucalyptus grandis HOM05D004841 ORTHO05D005874 6.0e-117 424.9 328 66.2
Haze_05641 Corylus avellana HOM05D004841 ORTHO05D005874 1.7e-116 423.3 318 67.3
Potri.012G107400 Populus trichocarpa HOM05D004841 ORTHO05D005874 1.7e-116 423.3 323 65.0
Thecc.06G146500 Theobroma cacao HOM05D004841 ORTHO05D005874 1.7e-116 423.3 334 65.6
Sabra13G0019700 Salix brachista HOM05D000092 ORTHO05D005874 3.9e-116 422.2 319 65.2
Nn3g20436 Nelumbo nucifera HOM05D004841 ORTHO05D005874 8.6e-116 421.0 322 65.5
TWI34G1122 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 1.1e-115 420.6 333 65.2
CANSAT11G1247 Cannabis sativa HOM05D004841 ORTHO05D005874 1.5e-115 420.2 319 63.9
CsaV3_6G051930 Cucumis sativus L. HOM05D004841 ORTHO05D005874 1.5e-115 420.2 337 64.4
HanXRQChr17g0564621 Helianthus annuus HOM05D004841 ORTHO05D005874 1.5e-115 420.2 317 67.8
DCAR_027897 Daucus carota HOM05D004841 ORTHO05D005874 3.3e-115 419.1 333 65.2
TAR628G1076 Trochodendron aralioides HOM05D004841 ORTHO05D005874 3.3e-115 419.1 321 67.3
vmacro03353 Vaccinium macrocarpon HOM05D004841 ORTHO05D005874 3.3e-115 419.1 335 63.9
MD10G1259100 Malus domestica HOM05D004841 ORTHO05D005874 4.3e-115 418.7 340 62.6
COL.COLO4_31030 Corchorus olitorius HOM05D004841 ORTHO05D005874 7.3e-115 417.9 331 63.4
THA.LOC104821761 Tarenaya hassleriana HOM05D004841 ORTHO05D005874 1.2e-114 417.2 345 63.2
SGA_v2.0_scaffold146G36131 Striga asiatica HOM05D004841 ORTHO05D005874 2.8e-114 416.0 316 66.1
Ciclev10015824m.g Citrus clementina HOM05D004841 ORTHO05D005874 4.7e-114 415.2 337 65.0
Migut.M00886 Erythranthe guttata HOM05D004841 ORTHO05D005874 1.4e-113 413.7 327 64.2
MBI02_g29870_MAGBIO Magnolia biondii HOM05D004841 ORTHO05D005874 1.4e-113 413.7 329 62.9
AL2G19660 Arabidopsis lyrata HOM05D004841 ORTHO05D005874 1.8e-113 413.3 339 64.3
RcHm_v2.0_Chr5g0014571 Rosa chinensis HOM05D004841 ORTHO05D005874 1.8e-113 413.3 328 64.3
Sp5g22530 Schrenkiella parvula HOM05D004841 ORTHO05D005874 1.8e-113 413.3 338 63.9
C02p23090 Brassica napus HOM05D004841 ORTHO05D005874 6.8e-113 411.4 328 64.3
Carub.0002s1024 Capsella rubella HOM05D004841 ORTHO05D005874 1.2e-112 410.6 341 63.3
AT1G65030 Arabidopsis thaliana HOM05D004841 ORTHO05D005874 2.0e-112 409.8 342 63.2
BolC2t08451H Brassica oleracea HOM05D004841 ORTHO05D005874 2.0e-112 409.8 328 64.0
Cc02_g29720 Coffea canephora HOM05D004841 ORTHO05D005874 2.0e-112 409.8 325 64.0
Thhalv10018816m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 2.0e-112 409.8 339 63.1
Aa31LG2G2230 Aethionema arabicum HOM05D004841 ORTHO05D005874 2.6e-112 409.5 339 62.5
BraA02t06489Z Brassica rapa HOM05D004841 ORTHO05D005874 2.6e-112 409.5 335 63.3
BcaB05g24290 Brassica carinata HOM05D004841 ORTHO05D005874 3.4e-112 409.1 339 63.1
Lj2A321T65 Lonicera japonica HOM05D004841 ORTHO05D005874 3.4e-112 409.1 320 65.3
A02p14280 Brassica napus HOM05D004841 ORTHO05D005874 5.8e-112 408.3 338 62.4
BraA07t31032Z Brassica rapa HOM05D004841 ORTHO05D005874 9.9e-112 407.5 333 64.0
BcaB03g15189 Brassica carinata HOM05D004841 ORTHO05D005874 1.3e-111 407.1 335 63.9
A07p34060 Brassica napus HOM05D004841 ORTHO05D005874 1.7e-111 406.8 335 63.6
CARHR056500 Cardamine hirsuta HOM05D004841 ORTHO05D005874 1.7e-111 406.8 342 63.2
C06p42730 Brassica napus HOM05D004841 ORTHO05D005874 2.2e-111 406.4 335 63.6
FAN21G1690 Fragaria x ananassa HOM05D004841 ORTHO05D005874 8.3e-111 404.4 328 61.9
FAN25G3271 Fragaria x ananassa HOM05D004841 ORTHO05D005874 1.1e-110 404.1 328 61.9
Oeu013128.1 Olea europaea HOM05D004841 ORTHO05D005874 1.9e-110 403.3 313 64.9
C06p42780 Brassica napus HOM05D004841 ORTHO05D005874 7.1e-110 401.4 330 63.6
Dinv21532 Davidia involucrata HOM05D004841 ORTHO05D005874 9.2e-110 401.0 330 64.2
ECA234G4271 Erigeron canadensis HOM05D004841 ORTHO05D005874 2.7e-109 399.4 324 63.0
FAN11G3214 Fragaria x ananassa HOM05D004841 ORTHO05D005874 2.7e-109 399.4 328 61.6
FAN16G1445 Fragaria x ananassa HOM05D004841 ORTHO05D005874 6.0e-109 398.3 328 61.3
Peaxi162Scf00465g00119 Petunia axillaris HOM05D004841 ORTHO05D005874 1.0e-108 397.5 319 61.8
FAN16G2733 Fragaria x ananassa HOM05D004841 ORTHO05D005874 1.7e-108 396.7 328 61.3
Solyc02g078830.4 Solanum lycopersicum HOM05D004841 ORTHO05D005874 2.3e-108 396.4 328 61.0
FvH4_3g05180 Fragaria vesca HOM05D004841 ORTHO05D005874 6.6e-108 394.8 328 61.0
Actinidia01573 Actinidia chinensis HOM05D004841 ORTHO05D005874 8.6e-108 394.4 325 63.4
ClCG01G024810 Citrullus lanatus HOM05D004841 ORTHO05D005874 1.1e-107 394.0 325 64.0
Sopen02g023650 Solanum pennellii HOM05D004841 ORTHO05D005874 2.5e-107 392.9 323 61.3
PGSC0003DMG400022420 Solanum tuberosum HOM05D004841 ORTHO05D005874 2.5e-107 392.9 323 61.0
BolC6t39162H Brassica oleracea HOM05D004841 ORTHO05D005874 7.3e-107 391.3 359 59.1
Sc02g0001540 Simmondsia chinensis HOM05D004841 ORTHO05D005874 2.1e-106 389.8 322 60.9
PSO541G1633 Papaver somniferum HOM05D004841 ORTHO05D005874 6.8e-105 384.8 326 57.7
PSO675G7289 Papaver somniferum HOM05D004841 ORTHO05D005874 6.8e-105 384.8 326 57.7
Nitab4.5_0004020g0010 Nicotiana tabacum HOM05D004841 ORTHO05D005874 1.2e-104 384.0 323 59.8
Nitab4.5_0000501g0020 Nicotiana tabacum HOM05D004841 ORTHO05D005874 3.4e-104 382.5 326 59.5
Aqoxy7G03441 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 1.3e-103 380.6 324 59.9
Aqoxy5G03944 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 1.7e-103 380.2 330 58.8
PSO017G5522 Papaver somniferum HOM05D004841 ORTHO05D005874 2.9e-103 379.4 316 58.2
EL10Ac7g16662 Beta vulgaris HOM05D004841 ORTHO05D005874 3.8e-103 379.0 338 60.1
Ah.08g211520 Amaranthus hybridus HOM05D004841 ORTHO05D005874 4.2e-102 375.6 337 59.1
Dinv32222 Davidia involucrata HOM05D004841 ORTHO05D005874 9.2e-102 374.4 258 69.4
BcaNung05075 Brassica carinata HOM05D004841 ORTHO05D005874 1.1e-99 367.5 335 60.0
Hund20587 Selenicereus undatus HOM05D004841 ORTHO05D005874 3.6e-98 362.5 343 56.9
HPP92_012189 Vanilla planifolia HOM05D004841 ORTHO05D005874 3.4e-96 355.9 317 55.8
SHI02861 Sapria himalayana HOM05D004841 ORTHO05D005874 2.9e-95 352.8 284 59.9
SalBow8G2637 Salvia bowleyana HOM05D004841 ORTHO05D005874 3.5e-93 345.9 318 58.5
AUR62026924 Chenopodium quinoa HOM05D004841 ORTHO05D005874 7.4e-83 311.6 252 63.5
Zm00001eb328580 Zea mays HOM05D004841 ORTHO05D005874 4.8e-82 308.9 328 51.8
ATR0772G214 Amborella trichopoda HOM05D004841 ORTHO05D005874 2.4e-81 306.6 320 45.9
SEGI_08519 Sequoiadendron giganteum HOM05D004841 ORTHO05D005874 2.4e-81 306.6 351 44.4
Mapoly0001s0498 Marchantia polymorpha HOM05D004841 ORTHO05D005874 1.4e-65 254.2 329 40.4
Os12g0615900 Oryza sativa ssp. japonica HOM05D004841 ORTHO05D005874 3.8e-63 246.1 251 53.4
CDE07G1158 Ceratophyllum demersum HOM05D004841 ORTHO05D005874 4.2e-62 242.7 220 53.6
SMO358G0291 Selaginella moellendorffii HOM05D004841 ORTHO05D005874 1.5e-59 234.2 310 41.3
BcaNung05072 Brassica carinata HOM05D004841 ORTHO05D005874 4.2e-54 216.1 180 62.2
BcaNung05071 Brassica carinata HOM05D004841 ORTHO05D005874 1.2e-53 214.5 180 62.2
AUR62042056 Chenopodium quinoa HOM05D004841 ORTHO05D005874 5.7e-51 205.7 166 63.3
Sabra13G0018400 Salix brachista HOM05D004841 ORTHO05D004358 4.8e-50 202.6 149 64.4
Cre03.g205800 Chlamydomonas reinhardtii HOM05D004841 ORTHO05D005874 1.1e-49 201.4 323 36.2
unitig_749.g13802 Utricularia gibba HOM05D004841 ORTHO05D005874 3.1e-49 199.9 158 64.6
Cpa.g.sc17.34 Carica papaya HOM05D004841 ORTHO05D005874 3.1e-41 173.3 135 66.7
Oeu062572.1 Olea europaea HOM05D004841 ORTHO05D005874 7.2e-38 162.2 131 63.4
Hma1.2p1_0594F.1_g185900 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 1.7e-34 151.0 100 74.0
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 8.3e-34 148.7 133 60.2
Sabra13G0018300 Salix brachista HOM05D004841 ORTHO05D005874 1.4e-33 147.9 107 67.3
Sabra13G0014000 Salix brachista HOM05D000092 ORTHO05D000042 9.1e-33 145.2 97 72.2
Sabra13G0015400 Salix brachista HOM05D004841 ORTHO05D005874 9.1e-33 145.2 109 66.1
Sabra13G0014300 Salix brachista HOM05D004841 ORTHO05D005874 1.6e-32 144.4 100 70.0
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 3.5e-32 143.3 128 61.7
Sabra13G0014700 Salix brachista HOM05D000070 ORTHO05D000047 7.7e-32 142.1 103 67.0
CBR_g4467 Chara braunii HOM05D004841 ORTHO05D005874 2.9e-31 140.2 288 30.6
Cpa.g.c47956 Carica papaya HOM05D004841 ORTHO05D005874 5.0e-31 139.4 95 68.4
Pp3c9_24890 Physcomitrium patens HOM05D004841 ORTHO05D005874 9.4e-30 135.2 193 40.9
unitig_749.g13803 Utricularia gibba HOM05D004841 ORTHO05D005874 9.4e-30 135.2 107 61.7
Pp3c15_25070 Physcomitrium patens HOM05D004841 ORTHO05D005874 8.0e-29 132.1 169 42.6
C06p41890 Brassica napus HOM05D004841 ORTHO05D005874 1.8e-28 131.0 112 59.8
VMungo0331G1481 Vigna mungo HOM05D004841 ORTHO05D005874 5.2e-28 129.4 108 60.2
BolC6t39240H Brassica oleracea HOM05D004841 ORTHO05D005874 1.5e-27 127.9 112 58.9
AagrBONN_evm.TU.Sc2ySwM_117.2336 Anthoceros agrestis HOM05D004841 ORTHO05D005874 9.8e-27 125.2 168 42.9
ATR1098G095 Amborella trichopoda HOM05D004841 ORTHO05D005874 1.8e-25 120.9 164 39.0
Oeu030952.1 Olea europaea HOM05D004841 ORTHO05D005874 5.9e-24 115.9 171 45.0
Sabra13G0015100 Salix brachista HOM05D004841 ORTHO05D005874 1.0e-23 115.2 92 60.9
Sabra13G0019300 Salix brachista HOM05D004841 ORTHO05D005874 1.0e-23 115.2 92 60.9
VMungo1382G0002 Vigna mungo HOM05D004841 ORTHO05D005874 5.0e-23 112.8 100 57.0
Thhalv10019798m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 1.4e-17 94.7 138 43.5
VMungo0712G0001 Vigna mungo HOM05D004841 ORTHO05D005874 8.6e-15 85.5 121 48.8
Oeu030951.1 Olea europaea HOM05D004841 ORTHO05D005874 1.7e-10 71.2 100 47.0
Sabra13G0018600 Salix brachista HOM05D004841 ORTHO05D005874 6.0e-08 62.8 43 72.1
BcaC03g14843 Brassica carinata HOM05D004841 ORTHO05D005874 1.3e-07 61.6 49 61.2
MBI05_g03452_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 2.3e-07 60.8 144 36.8
Actinidia16778 Actinidia chinensis HOM05D004841 ORTHO05D005874 1.9e-06 57.8 60 51.7
Carub.0004s1496 Capsella rubella HOM05D003335 ORTHO05D003853 2.5e-06 57.4 250 26.0
Gorai.006G008900 Gossypium raimondii HOM05D001610 ORTHO05D001585 3.3e-06 57.0 253 22.9
AT2G33340 Arabidopsis thaliana HOM05D003335 ORTHO05D003853 4.3e-06 56.6 250 25.2
AL4G28990 Arabidopsis lyrata HOM05D003335 ORTHO05D003853 5.6e-06 56.2 250 25.6
Thhalv10016510m.g Eutrema salsugineum HOM05D003335 ORTHO05D003853 5.6e-06 56.2 250 26.0
Sp4g15650 Schrenkiella parvula HOM05D003335 ORTHO05D003853 7.3e-06 55.8 250 25.6
Sed0021790 Sechium edule HOM05D001610 ORTHO05D001585 9.5e-06 55.5 304 21.7


User provided reference genes

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