Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g044210 Medicago truncatula HOM05D004725 ORTHO05D005683 1.7e-143 512.7 263 100.0
TPR.G27119 Trifolium pratense HOM05D004725 ORTHO05D005683 2.8e-98 362.5 216 86.6
Psat1g138600 Pisum sativum HOM05D004725 ORTHO05D005683 3.7e-90 335.5 217 79.3
Ca_09654_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 1.8e-89 333.2 213 83.6
Lj3g0003769 Lotus japonicus HOM05D004725 ORTHO05D005683 8.0e-85 317.8 216 75.9
Phvul.010G140100 Phaseolus vulgaris HOM05D004725 ORTHO05D005683 7.0e-81 304.7 212 75.0
VMungo0331G0107 Vigna mungo HOM05D004725 ORTHO05D005683 3.8e-79 298.9 212 73.1
arahy.Tifrunner.gnm1.ann1.ASV3U0 Arachis hypogaea HOM05D004725 ORTHO05D005683 6.5e-79 298.1 239 66.5
Glyma.07G011200 Glycine max HOM05D004725 ORTHO05D005683 5.7e-75 285.0 215 70.7
Glyma.08G194400 Glycine max HOM05D004725 ORTHO05D005683 1.7e-74 283.5 212 70.3
arahy.Tifrunner.gnm1.ann1.NMZ4WG Arachis hypogaea HOM05D004725 ORTHO05D005683 8.0e-69 264.6 324 49.4
Dinv15152 Davidia involucrata HOM05D004725 ORTHO05D005683 1.2e-67 260.8 198 66.2
CSS0037380 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 9.2e-65 251.1 190 67.9
Cc00_g03440 Coffea canephora HOM05D004725 ORTHO05D005683 5.9e-64 248.4 179 69.8
Potri.008G103800 Populus trichocarpa HOM05D004725 ORTHO05D005683 7.8e-64 248.1 212 59.9
Manes.03G206000 Manihot esculenta HOM05D004725 ORTHO05D005683 2.9e-63 246.1 213 59.6
Lsat_1_v5_gn_8_139661 Lactuca sativa HOM05D004725 ORTHO05D005683 3.8e-63 245.7 180 66.7
Migut.G00073 Erythranthe guttata HOM05D004725 ORTHO05D005683 6.6e-63 245.0 182 67.0
QL06p012630 Quercus lobata HOM05D004725 ORTHO05D005683 8.6e-63 244.6 207 61.4
GSVIVG01034975001 Vitis vinifera HOM05D004725 ORTHO05D005683 1.5e-62 243.8 190 67.9
CANSAT35G1772 Cannabis sativa HOM05D004725 ORTHO05D005683 2.5e-62 243.0 190 65.8
MSTRG.3853 Avicennia marina HOM05D004725 ORTHO05D005683 4.3e-62 242.3 194 64.9
Nn3g21748 Nelumbo nucifera HOM05D004725 ORTHO05D005683 4.3e-62 242.3 190 65.3
Sabra08G0078400 Salix brachista HOM05D004725 ORTHO05D005683 5.6e-62 241.9 212 59.0
RcHm_v2.0_Chr4g0425721 Rosa chinensis HOM05D004725 ORTHO05D005683 9.5e-62 241.1 199 64.3
Ciclev10005849m.g Citrus clementina HOM05D004725 ORTHO05D005683 1.2e-61 240.7 198 61.1
DCAR_030461 Daucus carota HOM05D004725 ORTHO05D005683 1.2e-61 240.7 196 63.8
CiPaw.02G073900 Carya illinoinensis HOM05D004725 ORTHO05D005683 1.6e-61 240.4 174 70.1
Peaxi162Scf00057g02232 Petunia axillaris HOM05D004725 ORTHO05D005683 2.8e-61 239.6 234 56.0
Lj3A833G37 Lonicera japonica HOM05D004725 ORTHO05D005683 4.7e-61 238.8 198 61.1
Oeu038772.1 Olea europaea HOM05D004725 ORTHO05D005683 8.0e-61 238.0 183 66.7
SalBow8G1743 Salvia bowleyana HOM05D004725 ORTHO05D005683 8.0e-61 238.0 188 63.8
unitig_37.g12782 Utricularia gibba HOM05D004725 ORTHO05D005683 8.0e-61 238.0 184 65.8
SGA_v2.0_scaffold157G37322 Striga asiatica HOM05D004725 ORTHO05D005683 1.0e-60 237.7 182 64.3
PGSC0003DMG400007347 Solanum tuberosum HOM05D004725 ORTHO05D005683 1.8e-60 236.9 190 62.1
Sed0009995 Sechium edule HOM05D004725 ORTHO05D005683 2.3e-60 236.5 186 65.1
Solyc11g065900.2 Solanum lycopersicum HOM05D004725 ORTHO05D005683 5.2e-60 235.3 190 62.1
Sopen11g025640 Solanum pennellii HOM05D004725 ORTHO05D005683 5.2e-60 235.3 190 62.1
FvH4_4g13700 Fragaria vesca HOM05D004725 ORTHO05D005683 6.8e-60 235.0 206 62.6
Nitab4.5_0000160g0190 Nicotiana tabacum HOM05D004725 ORTHO05D005683 8.9e-60 234.6 190 62.6
Eucgr.D00314 Eucalyptus grandis HOM05D004725 ORTHO05D005683 1.5e-59 233.8 191 64.4
C07p39630 Brassica napus HOM05D004725 ORTHO05D005683 3.4e-59 232.6 176 67.0
BolC7t44486H Brassica oleracea HOM05D004725 ORTHO05D005683 4.4e-59 232.3 176 67.0
Actinidia31555 Actinidia chinensis HOM05D004725 ORTHO05D005683 5.7e-59 231.9 197 61.4
Oeu001165.1 Olea europaea HOM05D004725 ORTHO05D005683 5.7e-59 231.9 232 55.2
Prupe.1G115500 Prunus persica HOM05D004725 ORTHO05D005683 5.7e-59 231.9 176 69.9
Carub.0008s0897 Capsella rubella HOM05D004725 ORTHO05D005683 9.8e-59 231.1 191 62.8
Carub.0008s0882 Capsella rubella HOM05D004725 ORTHO05D005683 1.3e-58 230.7 191 62.3
BcaC06g30733 Brassica carinata HOM05D004725 ORTHO05D005683 1.7e-58 230.3 169 68.6
FAN07G1636 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.7e-58 230.3 206 62.6
TAR376G0735 Trochodendron aralioides HOM05D004725 ORTHO05D005683 1.7e-58 230.3 190 63.7
A06p38630 Brassica napus HOM05D004725 ORTHO05D005683 2.9e-58 229.6 176 66.5
BraA06t26778Z Brassica rapa HOM05D004725 ORTHO05D005683 2.9e-58 229.6 176 66.5
CSS0018454 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 2.9e-58 229.6 190 64.2
ClCG05G001400 Citrullus lanatus HOM05D004725 ORTHO05D005683 2.9e-58 229.6 186 64.5
CsaV3_3G008790 Cucumis sativus L. HOM05D004725 ORTHO05D005683 2.9e-58 229.6 183 63.9
HanXRQChr17g0554971 Helianthus annuus HOM05D004725 ORTHO05D005683 1.4e-57 227.3 181 62.4
THA.LOC104827096 Tarenaya hassleriana HOM05D004725 ORTHO05D005683 1.4e-57 227.3 187 62.6
HanXRQChr10g0291591 Helianthus annuus HOM05D004725 ORTHO05D005683 1.8e-57 226.9 181 61.9
Thhalv10004892m.g Eutrema salsugineum HOM05D004725 ORTHO05D005683 2.4e-57 226.5 176 65.3
AL8G22680 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 3.2e-57 226.1 186 61.8
MBI18_g03518_MAGBIO Magnolia biondii HOM05D004725 ORTHO05D005683 4.1e-57 225.7 188 66.0
Aqoxy6G02121 Aquilegia oxysepala HOM05D004725 ORTHO05D005683 5.4e-57 225.3 172 68.0
AT5G49010 Arabidopsis thaliana HOM05D004725 ORTHO05D005683 9.2e-57 224.6 186 61.3
Sp2g19380 Schrenkiella parvula HOM05D004725 ORTHO05D005683 2.0e-56 223.4 176 64.2
Aa31LG11G8130 Aethionema arabicum HOM05D004725 ORTHO05D005683 2.7e-56 223.0 176 64.2
Gohir.A10G173400 Gossypium hirsutum HOM05D004725 ORTHO05D005683 3.5e-56 222.6 207 58.9
Gorai.011G201500 Gossypium raimondii HOM05D004725 ORTHO05D005683 4.6e-56 222.2 207 59.4
ECA236G4776 Erigeron canadensis HOM05D004725 ORTHO05D005683 7.8e-56 221.5 186 59.7
CARHR056790 Cardamine hirsuta HOM05D004725 ORTHO05D005683 1.0e-55 221.1 179 63.7
COL.COLO4_34597 Corchorus olitorius HOM05D004725 ORTHO05D005683 1.0e-55 221.1 189 63.0
Duzib212G0103 Durio zibethinus HOM05D004725 ORTHO05D005683 1.3e-55 220.7 218 58.7
Nitab4.5_0002789g0040 Nicotiana tabacum HOM05D004725 ORTHO05D005683 1.3e-55 220.7 172 65.1
Gohir.D10G179900 Gossypium hirsutum HOM05D004725 ORTHO05D005683 1.7e-55 220.3 218 57.8
Ca_02282_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 2.3e-55 219.9 129 88.4
CDE02G0725 Ceratophyllum demersum HOM05D004725 ORTHO05D005683 5.0e-55 218.8 178 63.5
COL.COLO4_09634 Corchorus olitorius HOM05D004725 ORTHO05D005683 1.1e-54 217.6 219 56.6
Thecc.04G302700 Theobroma cacao HOM05D004725 ORTHO05D005683 2.5e-54 216.5 218 57.3
AL8G22360 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 4.3e-54 215.7 203 56.7
SEGI_00745 Sequoiadendron giganteum HOM05D004725 ORTHO05D005683 9.5e-54 214.5 174 59.2
MELO3C006096.2 Cucumis melo HOM05D004725 ORTHO05D005683 2.8e-53 213.0 207 55.6
ATR0691G022 Amborella trichopoda HOM05D004725 ORTHO05D005683 8.0e-53 211.5 185 60.0
Haze_01314 Corylus avellana HOM05D004725 ORTHO05D005683 2.3e-52 209.9 160 68.1
Os05g0143400 Oryza sativa ssp. japonica HOM05D004725 ORTHO05D005683 3.1e-52 209.5 168 63.1
SHI00123 Sapria himalayana HOM05D004725 ORTHO05D005683 3.1e-52 209.5 219 53.4
PSO782G1146 Papaver somniferum HOM05D004725 ORTHO05D005683 4.0e-52 209.1 217 55.3
FAN12G0808 Fragaria x ananassa HOM05D004725 ORTHO05D005683 6.8e-52 208.4 206 57.8
TWI09G0594 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 6.8e-52 208.4 180 60.6
Sc25g0003230 Simmondsia chinensis HOM05D004725 ORTHO05D005683 1.5e-51 207.2 216 53.7
Zm00001eb108600 Zea mays HOM05D004725 ORTHO05D005683 4.4e-51 205.7 186 58.1
CAN.G598.3 Capsicum annuum HOM05D004725 ORTHO05D005683 1.7e-50 203.8 165 63.0
PSO384G4206 Papaver somniferum HOM05D004725 ORTHO05D005683 2.2e-50 203.4 204 54.9
PSO063G5877 Papaver somniferum HOM05D004725 ORTHO05D005683 4.9e-50 202.2 217 53.9
PGR031G0191 Punica granatum HOM05D004725 ORTHO05D005683 4.9e-50 202.2 184 58.7
vmacro08028 Vaccinium macrocarpon HOM05D004725 ORTHO05D005683 1.9e-49 200.3 161 65.8
HPP92_027744 Vanilla planifolia HOM05D004725 ORTHO05D005683 1.2e-48 197.6 178 59.0
SalBow6G0528 Salvia bowleyana HOM05D004725 ORTHO05D005683 1.7e-47 193.7 188 55.9
Ah.13g071340 Amaranthus hybridus HOM05D004725 ORTHO05D005683 6.6e-47 191.8 226 50.4
FAN12G0673 Fragaria x ananassa HOM05D004725 ORTHO05D005683 5.6e-46 188.7 227 52.0
BcaC06g30731 Brassica carinata HOM05D004725 ORTHO05D005683 1.6e-45 187.2 143 66.4
Dinv44275 Davidia involucrata HOM05D004725 ORTHO05D005683 2.8e-45 186.4 164 61.0
Lalb_Chr20g0110441 Lupinus albus HOM05D004725 ORTHO05D005683 3.6e-45 186.0 128 76.6
Atru.chr4.3042 Acer truncatum HOM05D004725 ORTHO05D005683 5.8e-43 178.7 138 66.7
GSVIVG01034912001 Vitis vinifera HOM05D004725 ORTHO05D005683 6.4e-42 175.3 170 58.8
MD13G1151200 Malus domestica HOM05D004725 ORTHO05D005683 4.1e-41 172.6 159 62.3
Rhsim05G0134600 Rhododendron simsii HOM05D004725 ORTHO05D005683 1.6e-40 170.6 253 42.7
SMO351G0117 Selaginella moellendorffii HOM05D004725 ORTHO05D005683 1.6e-40 170.6 190 49.5
Cpa.g.sc9.42 Carica papaya HOM05D004725 ORTHO05D005683 3.5e-40 169.5 162 60.5
CARHR182700 Cardamine hirsuta HOM05D004725 ORTHO05D005683 1.7e-39 167.2 153 56.9
Pp3c12_20580 Physcomitrium patens HOM05D004725 ORTHO05D005683 3.3e-38 162.9 166 50.0
Rhsim04G0240300 Rhododendron simsii HOM05D004725 ORTHO05D005683 4.3e-38 162.5 205 47.3
Mapoly0029s0136 Marchantia polymorpha HOM05D004725 ORTHO05D005683 5.6e-38 162.2 177 49.2
MD16G1152100 Malus domestica HOM05D004725 ORTHO05D005683 1.4e-36 157.5 168 57.7
EL10Ac3g05524 Beta vulgaris HOM05D004725 ORTHO05D005683 2.6e-35 153.3 251 40.6
AagrBONN_evm.TU.Sc2ySwM_228.2917 Anthoceros agrestis HOM05D004725 ORTHO05D005683 3.4e-35 152.9 167 47.9
CBR_g34308 Chara braunii HOM05D004725 ORTHO05D005683 1.0e-31 141.4 176 42.6
Potri.010G147050 Populus trichocarpa HOM05D004725 ORTHO05D005683 1.3e-31 141.0 215 40.0
AUR62039263 Chenopodium quinoa HOM05D004725 ORTHO05D005683 2.3e-31 140.2 210 40.5
FAN07G0549 Fragaria x ananassa HOM05D004725 ORTHO05D005683 2.3e-31 140.2 140 56.4
Hma1.2p1_0013F.1_g008380 Hydrangea macrophylla HOM05D004725 ORTHO05D005683 9.0e-28 128.3 105 59.0
FvH4_4g20000 Fragaria vesca HOM05D004725 ORTHO05D005683 4.2e-25 119.4 126 56.3
Lalb_Chr20g0115601 Lupinus albus HOM05D004725 ORTHO05D005683 4.2e-25 119.4 111 59.5
CAN.G327.11 Capsicum annuum HOM05D004725 ORTHO05D005683 1.7e-23 114.0 165 39.4
FAN22G2356 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.7e-23 114.0 91 64.8
CSS0006068 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 2.3e-23 113.6 87 64.4
HPP92_026067 Vanilla planifolia HOM05D004725 ORTHO05D005683 4.3e-22 109.4 99 59.6
MCO14G052 Micromonas commoda HOM05D004725 ORTHO05D005683 4.5e-19 99.4 191 36.6
Atru.chr3.3242 Acer truncatum HOM05D004725 ORTHO05D005683 7.6e-19 98.6 204 32.4
RcHm_v2.0_Chr7g0210081 Rosa chinensis HOM05D004725 ORTHO05D005683 2.4e-17 93.6 99 52.5
HPP92_026068 Vanilla planifolia HOM05D004725 ORTHO05D005683 4.2e-17 92.8 85 52.9
RcHm_v2.0_Chr6g0255221 Rosa chinensis HOM05D004725 ORTHO05D005683 4.3e-14 82.8 84 57.1
CARHR287810 Cardamine hirsuta HOM05D004725 ORTHO05D005683 9.6e-14 81.6 156 37.8
Actinidia18458 Actinidia chinensis HOM05D004725 ORTHO05D005683 8.1e-13 78.6 59 66.1
Zm00001eb143530 Zea mays HOM05D004725 ORTHO05D005683 3.1e-12 76.6 85 54.1
Zm00001eb401350 Zea mays HOM05D004725 ORTHO05D005683 9.0e-12 75.1 130 40.8
Lalb_Chr20g0110431 Lupinus albus HOM05D004725 ORTHO05D005683 2.0e-11 73.9 52 67.3
Cre09.g393600 Chlamydomonas reinhardtii HOM05D004725 ORTHO05D005683 3.4e-11 73.2 178 32.0
Nitab4.5_0007792g0050 Nicotiana tabacum HOM05D004725 ORTHO05D005683 3.2e-09 66.6 66 53.0
PRCOL_00004769 Prasinoderma coloniale HOM05D004725 ORTHO05D005683 7.1e-09 65.5 179 27.4
TWI73G0983 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 1.2e-08 64.7 66 56.1
AUR62016226 Chenopodium quinoa HOM05D004725 ORTHO05D005683 1.6e-08 64.3 47 59.6
GSVIVG01034926001 Vitis vinifera HOM05D004725 ORTHO05D005683 6.0e-08 62.4 60 60.0
Zm00001eb228430 Zea mays HOM05D004725 ORTHO05D005683 1.8e-07 60.8 86 45.3
Zm00001eb417800 Zea mays HOM05D004725 ORTHO05D005683 5.1e-07 59.3 68 48.5
Sabra10G0113400 Salix brachista HOM05D004725 ORTHO05D005683 6.7e-07 58.9 157 28.7


User provided reference genes

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