Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g041700 Medicago truncatula HOM05D006080 ORTHO05D007382 4.9e-161 572.0 549 100.0
TPR.G27762 Trifolium pratense HOM05D006080 ORTHO05D007382 5.9e-114 415.6 550 74.4
Psat1g133120 Pisum sativum HOM05D006080 ORTHO05D007382 2.8e-100 370.2 514 85.4
VMungo1309G1452 Vigna mungo HOM05D006080 ORTHO05D007382 1.7e-84 317.8 310 66.5
Lj6g0017816 Lotus japonicus HOM05D006080 ORTHO05D007382 3.2e-80 303.5 295 66.1
Ca_02204_v3 Cicer arietinum L. HOM05D006080 ORTHO05D007382 3.4e-77 293.5 553 77.6
Glyma.04G019000 Glycine max HOM05D006080 ORTHO05D007382 5.2e-70 269.6 280 67.5
Phvul.009G021500 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 6.8e-70 269.2 286 65.0
Lalb_Chr23g0276361 Lupinus albus HOM05D006080 ORTHO05D007382 5.9e-66 256.1 206 63.1
Glyma.06G019300 Glycine max HOM05D006080 ORTHO05D007382 2.9e-65 253.8 189 65.6
VMungo1215G0155 Vigna mungo HOM05D006080 ORTHO05D007382 7.5e-61 239.2 277 64.3
Lj4g0003679 Lotus japonicus HOM05D006080 ORTHO05D007382 1.1e-59 235.3 209 56.9
Phvul.009G114250 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 8.9e-54 215.7 202 58.4
Phvul.011G177400 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 4.9e-52 209.9 201 57.2
TPR.G30187 Trifolium pratense HOM05D006080 ORTHO05D007382 4.1e-51 206.8 238 47.5
Glyma.17G049100 Glycine max HOM05D006080 ORTHO05D007382 3.1e-46 190.7 186 55.9
Lalb_Chr07g0181201 Lupinus albus HOM05D006080 ORTHO05D007382 9.9e-45 185.7 157 56.1
arahy.Tifrunner.gnm1.ann1.YW7MJY Arachis hypogaea HOM05D006080 ORTHO05D007382 2.8e-39 167.5 183 48.6
Rhsim12G0001600 Rhododendron simsii HOM05D006080 ORTHO05D007382 1.1e-38 165.6 210 41.0
Rhsim04G0100300 Rhododendron simsii HOM05D006080 ORTHO05D007382 1.8e-38 164.9 209 40.2
CSS0013189 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 2.4e-38 164.5 245 40.4
CSS0013911 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 2.4e-38 164.5 245 40.4
Sed0020593 Sechium edule HOM05D006080 ORTHO05D007382 4.0e-38 163.7 207 42.5
Dinv24252 Davidia involucrata HOM05D006080 ORTHO05D007382 2.6e-37 161.0 228 40.4
vmacro00920 Vaccinium macrocarpon HOM05D006080 ORTHO05D007382 4.4e-37 160.2 210 40.0
QL93p0100_0628 Quercus lobata HOM05D006080 ORTHO05D007382 2.9e-36 157.5 164 48.8
QL02p058222 Quercus lobata HOM05D006080 ORTHO05D007382 8.4e-36 156.0 164 48.8
Gorai.013G224200 Gossypium raimondii HOM05D006080 ORTHO05D007382 1.4e-35 155.2 188 40.4
arahy.Tifrunner.gnm1.ann1.3R1N4J Arachis hypogaea HOM05D006080 ORTHO05D007382 1.9e-35 154.8 157 50.3
Thecc.09G076600 Theobroma cacao HOM05D006080 ORTHO05D007382 1.9e-35 154.8 185 41.1
FAN04G2899 Fragaria x ananassa HOM05D006080 ORTHO05D007382 2.4e-35 154.5 212 41.0
Gorai.009G035900 Gossypium raimondii HOM05D006080 ORTHO05D007382 3.2e-35 154.1 189 39.2
Duzib168G1192 Durio zibethinus HOM05D006080 ORTHO05D007382 4.2e-35 153.7 191 40.8
Gohir.A13G190700 Gossypium hirsutum HOM05D006080 ORTHO05D007382 3.5e-34 150.6 187 39.6
CARHR103620 Cardamine hirsuta HOM05D006080 ORTHO05D007382 4.6e-34 150.2 203 41.4
SHI30075 Sapria himalayana HOM05D006080 ORTHO05D007382 4.6e-34 150.2 212 37.7
Sabra06G0110900 Salix brachista HOM05D006080 ORTHO05D007382 6.0e-34 149.8 189 41.8
Prupe.7G198600 Prunus persica HOM05D006080 ORTHO05D007382 7.8e-34 149.4 187 43.3
CSS0008787 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 1.0e-33 149.1 212 41.0
COL.COLO4_18095 Corchorus olitorius HOM05D006080 ORTHO05D007382 1.7e-33 148.3 237 35.9
MBI19_g16224_MAGBIO Magnolia biondii HOM05D006080 ORTHO05D007382 1.7e-33 148.3 218 35.3
Potri.006G141800 Populus trichocarpa HOM05D006080 ORTHO05D007382 3.0e-33 147.5 182 42.3
Manes.09G158700 Manihot esculenta HOM05D006080 ORTHO05D007382 8.7e-33 146.0 175 42.3
Duzib187G1039 Durio zibethinus HOM05D006080 ORTHO05D007382 1.9e-32 144.8 166 42.8
TWI14G1385 Tripterygium wilfordii HOM05D006080 ORTHO05D007382 3.3e-32 144.1 171 42.1
CiPaw.03G206100 Carya illinoinensis HOM05D006080 ORTHO05D007382 4.3e-32 143.7 174 44.8
MD15G1217800 Malus domestica HOM05D006080 ORTHO05D007382 4.3e-32 143.7 173 43.4
Aa31sc481G20 Aethionema arabicum HOM05D006080 ORTHO05D007382 5.6e-32 143.3 203 41.9
Medtr4g040410 Medicago truncatula HOM05D006080 ORTHO05D007382 6.2e-31 139.8 150 46.0
MD02G1091700 Malus domestica HOM05D006080 ORTHO05D007382 1.8e-30 138.3 175 41.7
Actinidia00227 Actinidia chinensis HOM05D006080 ORTHO05D007382 2.0e-29 134.8 167 43.1
Atru.chr7.1705 Acer truncatum HOM05D006080 ORTHO05D007382 2.9e-28 131.0 166 40.4
AL3G43560 Arabidopsis lyrata HOM05D006080 ORTHO05D007382 4.9e-28 130.2 191 40.8
Sc14g0000540 Simmondsia chinensis HOM05D006080 ORTHO05D007382 4.9e-28 130.2 185 43.2
MSTRG.16549 Avicennia marina HOM05D006080 ORTHO05D007382 8.4e-28 129.4 212 38.7
Migut.B00654 Erythranthe guttata HOM05D006080 ORTHO05D007382 1.1e-27 129.0 209 38.8
Aqoxy5G04299 Aquilegia oxysepala HOM05D006080 ORTHO05D007382 1.4e-27 128.6 205 38.0
Carub.0003s2711 Capsella rubella HOM05D006080 ORTHO05D007382 1.9e-27 128.3 181 41.4
Lj9C313T10 Lonicera japonica HOM05D006080 ORTHO05D007382 1.9e-27 128.3 247 34.8
Nn7g36733 Nelumbo nucifera HOM05D006080 ORTHO05D007382 1.9e-27 128.3 156 42.9
AT2G06000 Arabidopsis thaliana HOM05D006080 ORTHO05D007382 2.4e-27 127.9 183 41.0
Sp3g24500 Schrenkiella parvula HOM05D006080 ORTHO05D007382 7.1e-27 126.3 186 40.3
Sc08g0008900 Simmondsia chinensis HOM05D006080 ORTHO05D007382 1.2e-26 125.6 180 39.4
Oeu000645.1 Olea europaea HOM05D006080 ORTHO05D007382 1.6e-26 125.2 212 37.3
DCAR_029235 Daucus carota HOM05D006080 ORTHO05D007382 2.1e-26 124.8 215 39.1
HanXRQChr10g0292001 Helianthus annuus HOM05D006080 ORTHO05D007382 1.0e-25 122.5 209 36.8
CDE02G4345 Ceratophyllum demersum HOM05D006080 ORTHO05D007382 1.7e-25 121.7 200 36.5
HanXRQChr05g0146121 Helianthus annuus HOM05D006080 ORTHO05D007382 1.7e-25 121.7 211 35.5
SGA_v2.0_scaffold332G48925 Striga asiatica HOM05D006080 ORTHO05D007382 5.1e-25 120.2 211 38.4
SalBow6G3562 Salvia bowleyana HOM05D006080 ORTHO05D007382 1.5e-24 118.6 218 35.3
SalBow6G5833 Salvia bowleyana HOM05D006080 ORTHO05D007382 1.5e-24 118.6 218 35.3
THA.LOC104808885 Tarenaya hassleriana HOM05D006080 ORTHO05D007382 2.5e-24 117.9 177 42.9
BraA07t28425Z Brassica rapa HOM05D006080 ORTHO05D007382 3.3e-24 117.5 182 40.1
BcaC06g35949 Brassica carinata HOM05D006080 ORTHO05D007382 4.3e-24 117.1 182 40.1
A07p06330 Brassica napus HOM05D006080 ORTHO05D007382 4.3e-24 117.1 181 40.3
Hund19654 Selenicereus undatus HOM05D006080 ORTHO05D007382 9.6e-24 115.9 188 35.6
Solyc01g104630.3 Solanum lycopersicum HOM05D006080 ORTHO05D007382 9.6e-24 115.9 242 33.5
Thhalv10002477m.g Eutrema salsugineum HOM05D006080 ORTHO05D007382 2.1e-23 114.8 183 38.8
CAN.G1702.1 Capsicum annuum HOM05D006080 ORTHO05D007382 4.8e-23 113.6 211 33.2
Sopen01g047140 Solanum pennellii HOM05D006080 ORTHO05D007382 4.8e-23 113.6 243 33.3
PGSC0003DMG401029758 Solanum tuberosum HOM05D006080 ORTHO05D007382 4.8e-23 113.6 244 33.6
C07p09380 Brassica napus HOM05D006080 ORTHO05D007382 8.1e-23 112.8 182 39.6
BolC7t41361H Brassica oleracea HOM05D006080 ORTHO05D007382 8.1e-23 112.8 182 39.6
Cc02_g22120 Coffea canephora HOM05D006080 ORTHO05D007382 8.1e-23 112.8 191 35.1
Cpa.g.sc28.32 Carica papaya HOM05D006080 ORTHO05D007382 1.1e-22 112.5 116 45.7
SalBow5G2015 Salvia bowleyana HOM05D006080 ORTHO05D007382 1.8e-22 111.7 211 36.0
SalBow5G4726 Salvia bowleyana HOM05D006080 ORTHO05D007382 1.8e-22 111.7 211 36.0
BcaB06g26878 Brassica carinata HOM05D006080 ORTHO05D007382 2.4e-22 111.3 180 38.3
THA.LOC104815335 Tarenaya hassleriana HOM05D006080 ORTHO05D007382 2.4e-22 111.3 177 39.5
Ciclev10007804m.g Citrus clementina HOM05D006080 ORTHO05D007382 5.3e-22 110.2 165 38.8
PGR142G0728 Punica granatum HOM05D006080 ORTHO05D007382 9.0e-22 109.4 180 35.6
Nitab4.5_0000249g0340 Nicotiana tabacum HOM05D006080 ORTHO05D007382 1.5e-21 108.6 241 32.4
AUR62044025 Chenopodium quinoa HOM05D006080 ORTHO05D007382 3.4e-21 107.5 185 36.8
AUR62003304 Chenopodium quinoa HOM05D006080 ORTHO05D007382 9.9e-21 105.9 184 34.8
Ah.07g204920 Amaranthus hybridus HOM05D002607 ORTHO05D008816 1.7e-20 105.1 184 33.2
CDE06G1744 Ceratophyllum demersum HOM05D000591 ORTHO05D000579 2.2e-20 104.8 202 33.7
Nitab4.5_0009570g0010 Nicotiana tabacum HOM05D006080 ORTHO05D007382 2.2e-20 104.8 242 32.2
Gohir.D13G196370 Gossypium hirsutum HOM05D006080 ORTHO05D007382 8.4e-20 102.8 103 45.6
Cfa002986 Carpinus fangiana HOM05D006080 ORTHO05D007382 1.1e-19 102.4 112 47.3
RcHm_v2.0_Chr7g0227901 Rosa chinensis HOM05D006080 ORTHO05D007382 1.4e-19 102.1 129 44.2
FAN08G1188 Fragaria x ananassa HOM05D006080 ORTHO05D007382 2.4e-19 101.3 107 48.6
ECA238G3807 Erigeron canadensis HOM05D006080 ORTHO05D007382 3.2e-19 100.9 164 37.8
FvH4_5g31880 Fragaria vesca HOM05D006080 ORTHO05D007382 3.2e-19 100.9 134 42.5
Haze_26015 Corylus avellana HOM05D006080 ORTHO05D007382 4.2e-19 100.5 112 46.4
Lsat_1_v5_gn_2_12120 Lactuca sativa HOM05D006080 ORTHO05D007382 7.1e-19 99.8 187 38.0
AUR62016281 Chenopodium quinoa HOM05D006080 ORTHO05D007382 1.2e-18 99.0 160 36.9
FAN18G2998 Fragaria x ananassa HOM05D006080 ORTHO05D007382 2.7e-18 97.8 134 41.8
CsaV3_2G001150 Cucumis sativus L. HOM05D006080 ORTHO05D007382 7.9e-18 96.3 148 38.5
CANSAT56G0731 Cannabis sativa HOM05D006080 ORTHO05D007382 1.0e-17 95.9 112 43.8
TWI59G0376 Tripterygium wilfordii HOM05D006080 ORTHO05D007382 3.9e-17 94.0 106 43.4
MELO3C004654.2 Cucumis melo HOM05D006080 ORTHO05D007382 4.3e-16 90.5 112 42.0
Eucgr.C00814 Eucalyptus grandis HOM05D006080 ORTHO05D007382 3.7e-15 87.4 117 39.3
ClCG11G001430 Citrullus lanatus HOM05D006080 ORTHO05D007382 1.1e-14 85.9 105 41.0
Atru.BG.18.p Acer truncatum HOM05D006080 ORTHO05D007382 2.4e-14 84.7 102 46.1
TAR383G0956 Trochodendron aralioides HOM05D006080 ORTHO05D007382 2.4e-14 84.7 109 40.4
Psat7g154760 Pisum sativum HOM05D006080 ORTHO05D007382 2.0e-13 81.6 65 63.1
Peaxi162Scf01290g00029 Petunia axillaris HOM05D006080 ORTHO05D007382 4.5e-13 80.5 128 37.5
ATR0598G196 Amborella trichopoda HOM05D006080 ORTHO05D007382 6.5e-12 76.6 125 37.6
Ca_14668_v3 Cicer arietinum L. HOM05D006080 ORTHO05D007382 3.2e-11 74.3 72 55.6
Atru.chr9.2259 Acer truncatum HOM05D002453 ORTHO05D002107 3.0e-09 67.8 131 32.1
Os04g0446100 Oryza sativa ssp. japonica HOM05D006080 ORTHO05D007382 3.9e-09 67.4 129 31.0
Lj7A578T58 Lonicera japonica HOM05D005973 ORTHO05D007285 1.5e-08 65.5 176 25.0
Nitab4.5_0010755g0010 Nicotiana tabacum HOM05D000162 ORTHO05D000090 1.5e-08 65.5 128 29.7
Nitab4.5_0007991g0010 Nicotiana tabacum HOM05D000162 ORTHO05D000090 2.5e-08 64.7 128 29.7
SalBow2G3114 Salvia bowleyana HOM05D000162 ORTHO05D000090 2.5e-08 64.7 135 30.4
Peaxi162Scf00087g00126 Petunia axillaris HOM05D005973 ORTHO05D007285 4.3e-08 63.9 176 25.6
Nitab4.5_0001130g0070 Nicotiana tabacum HOM05D000104 ORTHO05D009920 7.4e-08 63.2 166 27.7
Hma1.2p1_0735F.1_g210570 Hydrangea macrophylla HOM05D002453 ORTHO05D002107 9.6e-08 62.8 127 30.7
Hma1.2p1_0735F.1_g210580 Hydrangea macrophylla HOM05D002453 ORTHO05D002107 9.6e-08 62.8 127 30.7
Sopen06g002220 Solanum pennellii HOM05D000162 ORTHO05D000090 1.3e-07 62.4 127 29.1
Zm00001eb423410 Zea mays HOM05D006080 ORTHO05D007382 1.6e-07 62.0 108 30.6
Peaxi162Scf00154g00039 Petunia axillaris HOM05D000162 ORTHO05D000090 2.1e-07 61.6 134 29.1
Psat3g158640 Pisum sativum HOM05D000104 ORTHO05D009920 2.8e-07 61.2 183 26.2
PGR031G3623 Punica granatum HOM05D006819 ORTHO05D008763 2.8e-07 61.2 166 27.7
CiPaw.13G029800 Carya illinoinensis HOM05D000104 ORTHO05D009920 3.7e-07 60.8 180 27.2
Nn5g26955 Nelumbo nucifera HOM05D000104 ORTHO05D009920 3.7e-07 60.8 163 27.0
Prupe.2G122500 Prunus persica HOM05D000104 ORTHO05D009920 3.7e-07 60.8 228 24.6
SGA_v2.0_scaffold32G13359 Striga asiatica HOM05D005622 ORTHO05D002854 3.7e-07 60.8 150 26.0
CDE09G0095 Ceratophyllum demersum HOM05D006232 ORTHO05D007746 6.3e-07 60.1 165 25.5
Nitab4.5_0000428g0280 Nicotiana tabacum HOM05D000162 ORTHO05D000090 6.3e-07 60.1 120 28.3
Nitab4.5_0002932g0070 Nicotiana tabacum HOM05D000162 ORTHO05D000090 6.3e-07 60.1 129 27.1
Nitab4.5_0013850g0010 Nicotiana tabacum HOM05D000162 ORTHO05D000090 6.3e-07 60.1 127 29.1
Sc14g0005840 Simmondsia chinensis HOM05D005973 ORTHO05D007285 6.3e-07 60.1 173 24.3
Solyc06g007300.2 Solanum lycopersicum HOM05D000162 ORTHO05D000090 6.3e-07 60.1 127 28.3
Solyc06g007740.1 Solanum lycopersicum HOM05D000162 ORTHO05D000090 6.3e-07 60.1 127 28.3
Duzib205G1690 Durio zibethinus HOM05D002453 ORTHO05D002107 8.2e-07 59.7 125 29.6
Migut.F00552 Erythranthe guttata HOM05D000104 ORTHO05D009920 8.2e-07 59.7 163 25.8
Medtr7g044790 Medicago truncatula HOM05D000104 ORTHO05D009920 8.2e-07 59.7 188 27.1
SGA_v2.0_scaffold63G21630 Striga asiatica HOM05D005622 ORTHO05D002854 8.2e-07 59.7 150 25.3
FvH4_3g40130 Fragaria vesca HOM05D000162 ORTHO05D000090 1.1e-06 59.3 135 25.2
Hma1.2p1_3105F.1_g332750 Hydrangea macrophylla HOM05D006080 ORTHO05D007382 1.1e-06 59.3 128 31.2
Peaxi162Scf00154g00321 Petunia axillaris HOM05D000162 ORTHO05D000090 1.1e-06 59.3 128 28.1
CDE05G3403 Ceratophyllum demersum HOM05D003531 ORTHO05D004354 1.4e-06 58.9 134 28.4
DCAR_006392 Daucus carota HOM05D002986 ORTHO05D003966 1.4e-06 58.9 148 26.4
Manes.08G089400 Manihot esculenta HOM05D000104 ORTHO05D009920 1.4e-06 58.9 238 23.9
Nitab4.5_0000103g0110 Nicotiana tabacum HOM05D000104 ORTHO05D009920 1.4e-06 58.9 166 27.1
DCAR_022794 Daucus carota HOM05D002986 ORTHO05D003966 1.8e-06 58.5 148 26.4
Peaxi162Scf00154g00034 Petunia axillaris HOM05D000162 ORTHO05D000090 1.8e-06 58.5 128 30.5
PGSC0003DMG400009683 Solanum tuberosum HOM05D000162 ORTHO05D000090 1.8e-06 58.5 127 27.6
PGSC0003DMG400020644 Solanum tuberosum HOM05D000162 ORTHO05D000090 2.4e-06 58.2 127 27.6
Peaxi162Scf00154g00035 Petunia axillaris HOM05D000162 ORTHO05D000090 3.1e-06 57.8 134 28.4
Solyc03g095200.1 Solanum lycopersicum HOM05D000104 ORTHO05D009920 3.1e-06 57.8 166 26.5
Sopen03g025210 Solanum pennellii HOM05D000104 ORTHO05D009920 3.1e-06 57.8 166 26.5
ECA238G3715 Erigeron canadensis HOM05D000162 ORTHO05D000090 4.1e-06 57.4 135 24.4
Hma1.2p1_1014F.1_g247820 Hydrangea macrophylla HOM05D000104 ORTHO05D009920 4.1e-06 57.4 180 25.6
Peaxi162Scf00154g00046 Petunia axillaris HOM05D000162 ORTHO05D000090 5.3e-06 57.0 128 28.1
SalBow7G2569 Salvia bowleyana HOM05D000162 ORTHO05D000090 5.3e-06 57.0 166 27.7
SMO203G0052 Selaginella moellendorffii HOM05D005973 ORTHO05D038438 5.3e-06 57.0 127 31.5
Hund13321 Selenicereus undatus HOM05D005973 ORTHO05D007285 5.3e-06 57.0 173 25.4
VMungo1215G0866 Vigna mungo HOM05D000015 ORTHO05D007382 5.3e-06 57.0 100 36.0
Actinidia04470 Actinidia chinensis HOM05D000162 ORTHO05D000090 6.9e-06 56.6 135 25.2
Peaxi162Scf00154g00210 Petunia axillaris HOM05D000162 ORTHO05D000090 6.9e-06 56.6 134 28.4
QL10p016708 Quercus lobata HOM05D002453 ORTHO05D002107 6.9e-06 56.6 127 29.1
THA.LOC104817005 Tarenaya hassleriana HOM05D000104 ORTHO05D009920 6.9e-06 56.6 166 27.1
Atru.BG.180.p Acer truncatum HOM05D006503 ORTHO05D008116 9.0e-06 56.2 194 23.7
Haze_07333 Corylus avellana HOM05D002453 ORTHO05D002107 9.0e-06 56.2 125 28.8
DCAR_016546 Daucus carota HOM05D002453 ORTHO05D002107 9.0e-06 56.2 127 29.1
Gohir.A05G033900 Gossypium hirsutum HOM05D006080 ORTHO05D007382 9.0e-06 56.2 64 40.6
SGA_v2.0_scaffold223G42824 Striga asiatica HOM05D005337 ORTHO05D006567 9.0e-06 56.2 179 24.6
TAR623G1644 Trochodendron aralioides HOM05D005973 ORTHO05D007285 9.0e-06 56.2 176 24.4
HPP92_021332 Vanilla planifolia HOM05D007212 ORTHO05D000003 9.0e-06 56.2 136 28.7


User provided reference genes

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