Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g040140 Medicago truncatula HOM05D001325 ORTHO05D005438 5.2e-84 314.3 156 100.0
RcHm_v2.0_MTg0498381 Rosa chinensis HOM05D001325 ORTHO05D005438 6.1e-16 88.2 93 54.8
MBI05_g05342_MAGBIO Magnolia biondii HOM05D001750 ORTHO05D001825 2.3e-15 86.3 121 46.3
HanXRQChr00c0055g0571461 Helianthus annuus HOM05D001325 ORTHO05D001540 3.9e-15 85.5 93 53.8
HanXRQMTg0579641 Helianthus annuus HOM05D001325 ORTHO05D001540 3.9e-15 85.5 93 53.8
Lsat_1_v5_gn_1_24001 Lactuca sativa HOM05D001325 ORTHO05D001540 3.9e-15 85.5 93 53.8
Lalb_Chr00c24g0406971 Lupinus albus HOM05D001325 ORTHO05D005438 6.7e-15 84.7 113 47.8
Lalb_Chr17g0337401 Lupinus albus HOM05D001325 ORTHO05D005438 6.7e-15 84.7 113 47.8
Sc04g0005510 Simmondsia chinensis HOM05D001325 ORTHO05D005438 6.7e-15 84.7 93 53.8
MBI06_g25391_MAGBIO Magnolia biondii HOM05D001750 ORTHO05D001825 8.8e-15 84.3 93 52.7
Medtr0082s0040 Medicago truncatula HOM05D001325 ORTHO05D001540 1.1e-14 84.0 112 47.3
LjContig00315g0018892 Lotus japonicus HOM05D001325 ORTHO05D005438 1.5e-14 83.6 113 46.9
arahy.Tifrunner.gnm1.ann1.2YD7KU Arachis hypogaea HOM05D001325 ORTHO05D001540 2.0e-14 83.2 147 42.2
arahy.Tifrunner.gnm1.ann1.KX3NGM Arachis hypogaea HOM05D001325 ORTHO05D001540 2.0e-14 83.2 147 42.2
arahy.Tifrunner.gnm1.ann1.TPY4ZQ Arachis hypogaea HOM05D001325 ORTHO05D001540 2.0e-14 83.2 147 42.2
arahy.Tifrunner.gnm1.ann1.XXM48B Arachis hypogaea HOM05D001325 ORTHO05D001540 2.0e-14 83.2 147 42.2
arahy.Tifrunner.gnm1.ann1.Q8C5RR Arachis hypogaea HOM05D001325 ORTHO05D005438 2.6e-14 82.8 93 52.7
Lalb_Chr03g0038871 Lupinus albus HOM05D001325 ORTHO05D005438 2.6e-14 82.8 118 46.6
Ah.10g028160 Amaranthus hybridus HOM05D001325 ORTHO05D005438 3.3e-14 82.4 113 46.0
SHI42503 Sapria himalayana HOM05D001325 ORTHO05D001540 4.4e-14 82.0 113 46.9
CsaV3_UNG208560 Cucumis sativus L. HOM05D001325 ORTHO05D005438 5.7e-14 81.6 93 51.6
MSTRG.3526 Avicennia marina HOM05D001325 ORTHO05D005438 7.4e-14 81.3 93 51.6
CDE02G2710 Ceratophyllum demersum HOM05D001325 ORTHO05D001540 7.4e-14 81.3 113 46.0
Lj2A1221T109 Lonicera japonica HOM05D001325 ORTHO05D005438 7.4e-14 81.3 93 51.6
DCAR_032435 Daucus carota HOM05D001325 ORTHO05D005438 9.7e-14 80.9 93 52.7
SHI36383 Sapria himalayana HOM05D001325 ORTHO05D001540 9.7e-14 80.9 93 52.7
SHI36771 Sapria himalayana HOM05D001325 ORTHO05D001540 9.7e-14 80.9 90 52.2
SHI36782 Sapria himalayana HOM05D001325 ORTHO05D001540 9.7e-14 80.9 90 52.2
HanXRQChr16g0504411 Helianthus annuus HOM05D001325 ORTHO05D001540 1.3e-13 80.5 51 76.5
SHI38566 Sapria himalayana HOM05D001325 ORTHO05D001540 1.3e-13 80.5 93 52.7
SHI39812 Sapria himalayana HOM05D001325 ORTHO05D001540 1.3e-13 80.5 93 52.7
SHI49994 Sapria himalayana HOM05D001325 ORTHO05D001540 1.3e-13 80.5 93 52.7
SHI50801 Sapria himalayana HOM05D001325 ORTHO05D001540 1.3e-13 80.5 93 52.7
SHI51105 Sapria himalayana HOM05D001325 ORTHO05D005438 1.3e-13 80.5 93 52.7
SHI51700 Sapria himalayana HOM05D001325 ORTHO05D001540 1.3e-13 80.5 93 52.7
SHI53372 Sapria himalayana HOM05D001325 ORTHO05D001540 1.3e-13 80.5 93 52.7
SHI54219 Sapria himalayana HOM05D001325 ORTHO05D001540 1.3e-13 80.5 113 46.9
PGR028G0020 Punica granatum HOM05D001325 ORTHO05D005438 1.7e-13 80.1 93 51.6
CANSAT25G2613 Cannabis sativa HOM05D001325 ORTHO05D005438 2.2e-13 79.7 93 50.5
HanXRQChr15g0488691 Helianthus annuus HOM05D001325 ORTHO05D005438 2.8e-13 79.3 99 48.5
Potri.007G062001 Populus trichocarpa HOM05D001325 ORTHO05D005438 2.8e-13 79.3 113 46.0
SalBow1G5537 Salvia bowleyana HOM05D001325 ORTHO05D005438 2.8e-13 79.3 93 50.5
SalBow1G6489 Salvia bowleyana HOM05D001325 ORTHO05D005438 2.8e-13 79.3 93 50.5
SalBow1G6915 Salvia bowleyana HOM05D001325 ORTHO05D005438 2.8e-13 79.3 93 50.5
SHI35326 Sapria himalayana HOM05D001325 ORTHO05D001540 3.7e-13 79.0 93 51.6
SHI36581 Sapria himalayana HOM05D001325 ORTHO05D001540 3.7e-13 79.0 93 51.6
SHI46090 Sapria himalayana HOM05D001325 ORTHO05D001540 3.7e-13 79.0 95 50.5
SHI54160 Sapria himalayana HOM05D001325 ORTHO05D001540 3.7e-13 79.0 95 50.5
SHI39777 Sapria himalayana HOM05D001325 ORTHO05D001540 4.8e-13 78.6 92 52.2
SHI43970 Sapria himalayana HOM05D001325 ORTHO05D001540 4.8e-13 78.6 113 46.0
SHI44576 Sapria himalayana HOM05D001325 ORTHO05D001540 4.8e-13 78.6 93 50.5
Peaxi162Scf00588g00111 Petunia axillaris HOM05D001325 ORTHO05D005438 8.2e-13 77.8 92 51.1
Peaxi162Scf00625g00027 Petunia axillaris HOM05D000743 ORTHO05D000580 1.1e-12 77.4 93 50.5
SHI49748 Sapria himalayana HOM05D001325 ORTHO05D001540 1.1e-12 77.4 113 46.0
Solyc00g500261.1 Solanum lycopersicum HOM05D001325 ORTHO05D005438 1.1e-12 77.4 93 50.5
Solyc00g500361.1 Solanum lycopersicum HOM05D001325 ORTHO05D011137 1.1e-12 77.4 93 50.5
Nitab4.5_0001796g0230 Nicotiana tabacum HOM05D001325 ORTHO05D005438 1.4e-12 77.0 93 48.4
SHI35190 Sapria himalayana HOM05D001325 ORTHO05D001540 1.4e-12 77.0 76 55.3
Solyc00g500115.1 Solanum lycopersicum HOM05D001325 ORTHO05D005438 1.4e-12 77.0 93 50.5
AL3G44430 Arabidopsis lyrata HOM05D001325 ORTHO05D005438 1.8e-12 76.6 71 57.7
AT2G07751 Arabidopsis thaliana HOM05D001325 ORTHO05D005438 1.8e-12 76.6 71 57.7
ATMG00990 Arabidopsis thaliana HOM05D001325 ORTHO05D005438 1.8e-12 76.6 71 57.7
BolSC28t60356H Brassica oleracea HOM05D001325 ORTHO05D005438 1.8e-12 76.6 71 57.7
BraSC48t46255Z Brassica rapa HOM05D001325 ORTHO05D005438 1.8e-12 76.6 71 57.7
BraSC77t46664Z Brassica rapa HOM05D001325 ORTHO05D005438 1.8e-12 76.6 71 57.7
CARHR283250 Cardamine hirsuta HOM05D001325 ORTHO05D005438 1.8e-12 76.6 71 57.7
SHI34630 Sapria himalayana HOM05D001325 ORTHO05D001540 1.8e-12 76.6 90 51.1
SHI36629 Sapria himalayana HOM05D001325 ORTHO05D001540 2.4e-12 76.3 107 45.8
SHI33930 Sapria himalayana HOM05D001325 ORTHO05D001540 3.1e-12 75.9 90 50.0
SHI49663 Sapria himalayana HOM05D001325 ORTHO05D001540 3.1e-12 75.9 90 52.2
SHI46908 Sapria himalayana HOM05D001325 ORTHO05D001540 5.3e-12 75.1 89 50.6
SHI51228 Sapria himalayana HOM05D001325 ORTHO05D001540 5.3e-12 75.1 89 50.6
SHI35457 Sapria himalayana HOM05D001325 ORTHO05D005438 7.0e-12 74.7 90 48.9
SHI35334 Sapria himalayana HOM05D001325 ORTHO05D001540 9.1e-12 74.3 51 72.5
SHI51612 Sapria himalayana HOM05D001325 ORTHO05D001540 1.6e-11 73.6 93 50.5
Cpa.g.sc87.115 Carica papaya HOM05D001325 ORTHO05D005438 2.0e-11 73.2 84 51.2
Nitab4.5_0000172g0980 Nicotiana tabacum HOM05D001325 ORTHO05D005438 2.0e-11 73.2 112 44.6
SHI27348 Sapria himalayana HOM05D001325 ORTHO05D005438 3.5e-11 72.4 93 48.4
SHI36966 Sapria himalayana HOM05D001325 ORTHO05D005438 3.5e-11 72.4 93 49.5
SHI50625 Sapria himalayana HOM05D001325 ORTHO05D001540 3.5e-11 72.4 93 49.5
Nitab4.5_0000844g0170 Nicotiana tabacum HOM05D001325 ORTHO05D005438 4.5e-11 72.0 92 46.7
SHI40932 Sapria himalayana HOM05D001325 ORTHO05D005438 5.9e-11 71.6 51 70.6
CAN.G266.7 Capsicum annuum HOM05D001325 ORTHO05D005438 1.3e-10 70.5 96 49.0
Nitab4.5_0005853g0080 Nicotiana tabacum HOM05D001325 ORTHO05D001540 1.3e-10 70.5 90 47.8
Os12g0423142 Oryza sativa ssp. japonica HOM05D001325 ORTHO05D005438 1.3e-10 70.5 51 68.6
SHI54131 Sapria himalayana HOM05D001325 ORTHO05D001540 1.7e-10 70.1 93 48.4
Psat0s4951g0160 Pisum sativum HOM05D001325 ORTHO05D005438 5.0e-10 68.6 43 76.7
SHI53190 Sapria himalayana HOM05D001325 ORTHO05D001540 5.0e-10 68.6 86 50.0
SHI51658 Sapria himalayana HOM05D001325 ORTHO05D001540 6.5e-10 68.2 92 47.8
Solyc00g500225.1 Solanum lycopersicum HOM05D001325 ORTHO05D005438 8.5e-10 67.8 85 49.4
Nitab4.5_0001788g0340 Nicotiana tabacum HOM05D001325 ORTHO05D005438 1.1e-09 67.4 85 49.4
Lsat_1_v5_gn_5_16541 Lactuca sativa HOM05D001325 ORTHO05D005438 5.5e-09 65.1 37 75.7
SHI42173 Sapria himalayana HOM05D001325 ORTHO05D001540 7.2e-09 64.7 49 67.3
Pp3c21_8460 Physcomitrium patens HOM05D001325 ORTHO05D005438 1.2e-08 63.9 89 41.6
SHI50386 Sapria himalayana HOM05D001325 ORTHO05D005438 1.6e-08 63.5 51 62.7
SHI48150 Sapria himalayana HOM05D001325 ORTHO05D001540 2.1e-08 63.2 50 66.0
Duzib132G0580 Durio zibethinus HOM05D001325 ORTHO05D005438 2.7e-08 62.8 49 59.2
Nitab4.5_0000172g1710 Nicotiana tabacum HOM05D001325 ORTHO05D005438 2.7e-08 62.8 71 50.7
HanXRQChr12g0367961 Helianthus annuus HOM05D001325 ORTHO05D005438 3.6e-08 62.4 50 62.0
HanXRQChr12g0370991 Helianthus annuus HOM05D001325 ORTHO05D005438 4.7e-08 62.0 44 70.5
Nitab4.5_0001770g0040 Nicotiana tabacum HOM05D001325 ORTHO05D005438 3.0e-07 59.3 51 56.9
SHI41241 Sapria himalayana HOM05D001325 ORTHO05D005438 4.0e-07 58.9 37 73.0
SHI46259 Sapria himalayana HOM05D001325 ORTHO05D005438 4.0e-07 58.9 37 73.0
SHI48902 Sapria himalayana HOM05D001325 ORTHO05D005438 4.0e-07 58.9 37 73.0
MBI10_g41320_MAGBIO Magnolia biondii HOM05D001325 ORTHO05D005438 2.0e-06 56.6 91 41.8
SHI52150 Sapria himalayana HOM05D001325 ORTHO05D001540 7.5e-06 54.7 42 64.3


User provided reference genes

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