Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g033680 Medicago truncatula HOM05D001068 ORTHO05D029604 3.9e-44 181.0 89 100.0
Lj3g0024792 Lotus japonicus HOM05D001068 ORTHO05D002190 2.1e-13 79.0 41 87.8
Medtr4g079290 Medicago truncatula HOM05D001068 ORTHO05D002190 2.1e-13 79.0 41 87.8
TPR.G34856 Trifolium pratense HOM05D001068 ORTHO05D002190 2.1e-13 79.0 41 87.8
Psat7g166960 Pisum sativum HOM05D001068 ORTHO05D002190 3.6e-13 78.2 41 87.8
arahy.Tifrunner.gnm1.ann1.C7HVNL Arachis hypogaea HOM05D001068 ORTHO05D002190 1.4e-12 76.3 41 85.4
arahy.Tifrunner.gnm1.ann1.JX5WJ5 Arachis hypogaea HOM05D001068 ORTHO05D002190 1.4e-12 76.3 41 85.4
Ca_18909_v3 Cicer arietinum L. HOM05D001068 ORTHO05D002190 1.4e-12 76.3 41 82.9
VMungo1127G1906 Vigna mungo HOM05D001068 ORTHO05D002190 2.3e-12 75.5 41 82.9
Lj3g0009326 Lotus japonicus HOM05D001068 ORTHO05D002190 6.8e-12 73.9 41 80.5
Glyma.12G120300 Glycine max HOM05D001068 ORTHO05D002190 8.9e-12 73.6 41 78.0
VMungo1127G1013 Vigna mungo HOM05D001068 ORTHO05D002190 1.5e-11 72.8 41 80.5
VMungo1127G1511 Vigna mungo HOM05D001068 ORTHO05D020229 1.5e-11 72.8 41 80.5
Glyma.06G285400 Glycine max HOM05D001068 ORTHO05D002190 9.8e-11 70.1 41 75.6
Phvul.011G116000 Phaseolus vulgaris HOM05D001068 ORTHO05D002190 2.8e-10 68.6 41 73.2
Prupe.3G127000 Prunus persica HOM05D001068 ORTHO05D002190 3.7e-10 68.2 42 71.4
Actinidia10988 Actinidia chinensis HOM05D001068 ORTHO05D002190 3.1e-09 65.1 41 68.3
Lalb_Chr03g0029731 Lupinus albus HOM05D001068 ORTHO05D002190 4.1e-09 64.7 41 68.3
vmacro12355 Vaccinium macrocarpon HOM05D001068 ORTHO05D002190 4.1e-09 64.7 42 66.7
FAN05G5054 Fragaria x ananassa HOM05D001068 ORTHO05D002190 7.0e-09 63.9 42 66.7
MD17G1234100 Malus domestica HOM05D001068 ORTHO05D002190 7.0e-09 63.9 41 68.3
FvH4_6g26900 Fragaria vesca HOM05D001068 ORTHO05D002190 9.2e-09 63.5 42 66.7
FAN14G5876 Fragaria x ananassa HOM05D001068 ORTHO05D002190 9.2e-09 63.5 42 66.7
RcHm_v2.0_Chr2g0128641 Rosa chinensis HOM05D001068 ORTHO05D002190 9.2e-09 63.5 42 66.7
SGA_v2.0_scaffold258G45790 Striga asiatica HOM05D001068 ORTHO05D002190 9.2e-09 63.5 41 68.3
BcaC05g24286 Brassica carinata HOM05D001068 ORTHO05D002190 1.2e-08 63.2 42 64.3
Dinv02425 Davidia involucrata HOM05D001068 ORTHO05D002190 1.2e-08 63.2 41 68.3
Manes.12G092800 Manihot esculenta HOM05D001068 ORTHO05D002190 1.2e-08 63.2 41 63.4
PGR142G0739 Punica granatum HOM05D001068 ORTHO05D002190 1.6e-08 62.8 41 63.4
Rhsim06G0135500 Rhododendron simsii HOM05D001068 ORTHO05D002190 2.0e-08 62.4 41 68.3
Nitab4.5_0005651g0020 Nicotiana tabacum HOM05D001068 ORTHO05D002190 2.7e-08 62.0 42 59.5
Peaxi162Scf00241g01211 Petunia axillaris HOM05D001068 ORTHO05D002190 2.7e-08 62.0 41 65.9
Ah.01g003900 Amaranthus hybridus HOM05D001068 ORTHO05D002190 3.5e-08 61.6 41 63.4
Gohir.D12G144200 Gossypium hirsutum HOM05D001068 ORTHO05D002190 3.5e-08 61.6 43 53.5
Gorai.008G155500 Gossypium raimondii HOM05D001068 ORTHO05D002190 3.5e-08 61.6 43 53.5
Hund07850 Selenicereus undatus HOM05D001068 ORTHO05D020229 3.5e-08 61.6 41 63.4
Thecc.02G188700 Theobroma cacao HOM05D001068 ORTHO05D002190 3.5e-08 61.6 42 57.1
TAR627G0187 Trochodendron aralioides HOM05D001068 ORTHO05D002190 3.5e-08 61.6 41 63.4
Atru.chr6.2845 Acer truncatum HOM05D001068 ORTHO05D002190 4.5e-08 61.2 42 64.3
Ciclev10014502m.g Citrus clementina HOM05D001068 ORTHO05D002190 4.5e-08 61.2 41 65.9
Hma1.2p1_0002F.1_g002410 Hydrangea macrophylla HOM05D001068 ORTHO05D002190 4.5e-08 61.2 41 63.4
Nn1g04278 Nelumbo nucifera HOM05D001068 ORTHO05D002190 4.5e-08 61.2 41 65.9
PSO541G4864 Papaver somniferum HOM05D001068 ORTHO05D002190 4.5e-08 61.2 41 65.9
PSO675G3167 Papaver somniferum HOM05D001068 ORTHO05D002190 4.5e-08 61.2 41 65.9
CSS0000404 Camellia sinensis var. sinensis HOM05D001068 ORTHO05D002190 5.9e-08 60.8 41 63.4
CSS0049947 Camellia sinensis var. sinensis HOM05D001068 ORTHO05D002190 5.9e-08 60.8 41 63.4
Migut.M00195 Erythranthe guttata HOM05D001068 ORTHO05D002190 5.9e-08 60.8 41 65.9
Gohir.A12G139700 Gossypium hirsutum HOM05D001068 ORTHO05D002190 5.9e-08 60.8 43 53.5
Os06g0354500 Oryza sativa ssp. japonica HOM05D001068 ORTHO05D002190 5.9e-08 60.8 57 57.9
A10p05020 Brassica napus HOM05D001068 ORTHO05D002190 7.8e-08 60.5 42 61.9
C05p04620 Brassica napus HOM05D001068 ORTHO05D002190 7.8e-08 60.5 42 61.9
BolC5t29234H Brassica oleracea HOM05D001068 ORTHO05D002190 7.8e-08 60.5 42 61.9
BraA10t42768Z Brassica rapa HOM05D001068 ORTHO05D002190 7.8e-08 60.5 42 61.9
CANSAT64G0075 Cannabis sativa HOM05D001068 ORTHO05D002190 7.8e-08 60.5 41 63.4
CARHR005870 Cardamine hirsuta HOM05D001068 ORTHO05D002190 7.8e-08 60.5 42 61.9
Zm00001eb148110 Zea mays HOM05D001068 ORTHO05D002190 7.8e-08 60.5 57 57.9
AUR62035386 Chenopodium quinoa HOM05D001068 ORTHO05D020229 1.0e-07 60.1 41 63.4
AUR62036086 Chenopodium quinoa HOM05D001068 ORTHO05D020229 1.0e-07 60.1 41 63.4
Thhalv10006988m.g Eutrema salsugineum HOM05D001068 ORTHO05D002190 1.0e-07 60.1 42 64.3
Hund00993 Selenicereus undatus HOM05D001068 ORTHO05D002190 1.0e-07 60.1 42 61.9
BcaB02g06807 Brassica carinata HOM05D001068 ORTHO05D002190 1.3e-07 59.7 42 61.9
Sp1g05100 Schrenkiella parvula HOM05D001068 ORTHO05D002190 1.3e-07 59.7 42 61.9
Carub.0001s0566 Capsella rubella HOM05D001068 ORTHO05D002190 1.7e-07 59.3 42 61.9
Eucgr.K01080 Eucalyptus grandis HOM05D001068 ORTHO05D002190 1.7e-07 59.3 41 65.9
Sed0014357 Sechium edule HOM05D001068 ORTHO05D002190 1.7e-07 59.3 64 48.4
Aa31LG1G7310 Aethionema arabicum HOM05D001068 ORTHO05D002190 2.3e-07 58.9 42 59.5
AL1G16310 Arabidopsis lyrata HOM05D001068 ORTHO05D002190 2.3e-07 58.9 42 61.9
AT1G06290 Arabidopsis thaliana HOM05D001068 ORTHO05D002190 2.3e-07 58.9 42 61.9
COL.COLO4_04707 Corchorus olitorius HOM05D001068 ORTHO05D002190 2.9e-07 58.5 42 54.8
CsaV3_2G034560 Cucumis sativus L. HOM05D001068 ORTHO05D002190 2.9e-07 58.5 41 61.0
Nitab4.5_0002196g0050 Nicotiana tabacum HOM05D001068 ORTHO05D002190 2.9e-07 58.5 42 57.1
Oeu064840.1 Olea europaea HOM05D001068 ORTHO05D002190 2.9e-07 58.5 41 61.0
SalBow7G1339 Salvia bowleyana HOM05D001068 ORTHO05D002190 2.9e-07 58.5 41 61.0
MELO3C019320.2 Cucumis melo HOM05D001068 ORTHO05D002190 3.9e-07 58.2 41 61.0
Sed0001164 Sechium edule HOM05D001068 ORTHO05D002190 3.9e-07 58.2 41 56.1
Sed0007318 Sechium edule HOM05D001068 ORTHO05D002190 3.9e-07 58.2 41 56.1
Cpa.g.sc50.2 Carica papaya HOM05D001068 ORTHO05D002190 5.0e-07 57.8 41 58.5
Cfa014679 Carpinus fangiana HOM05D001068 ORTHO05D002190 5.0e-07 57.8 41 61.0
ClCG02G010170 Citrullus lanatus HOM05D001068 ORTHO05D002190 5.0e-07 57.8 41 61.0
Haze_13278 Corylus avellana HOM05D001068 ORTHO05D002190 5.0e-07 57.8 41 61.0
SMO266G0061 Selaginella moellendorffii HOM05D001068 ORTHO05D002190 5.0e-07 57.8 64 50.0
BcaB02g06804 Brassica carinata HOM05D001068 ORTHO05D002190 6.6e-07 57.4 57 50.9
BcaB02g06806 Brassica carinata HOM05D001068 ORTHO05D002190 6.6e-07 57.4 57 50.9
BcaC05g24275 Brassica carinata HOM05D001068 ORTHO05D002190 6.6e-07 57.4 42 57.1
A10p05050 Brassica napus HOM05D001068 ORTHO05D002190 6.6e-07 57.4 42 57.1
C05p04640 Brassica napus HOM05D001068 ORTHO05D002190 6.6e-07 57.4 42 57.1
BraA10t42771Z Brassica rapa HOM05D001068 ORTHO05D002190 6.6e-07 57.4 42 57.1
Solyc10g008110.4 Solanum lycopersicum HOM05D001068 ORTHO05D002190 6.6e-07 57.4 41 58.5
Sopen10g003980 Solanum pennellii HOM05D001068 ORTHO05D002190 6.6e-07 57.4 41 58.5
AT1G06310 Arabidopsis thaliana HOM05D001068 ORTHO05D002190 8.6e-07 57.0 57 50.9
BolC5t29235H Brassica oleracea HOM05D001068 ORTHO05D020229 8.6e-07 57.0 42 57.1
BolC5t29237H Brassica oleracea HOM05D001068 ORTHO05D002190 8.6e-07 57.0 42 57.1
CAN.G782.15 Capsicum annuum HOM05D001068 ORTHO05D002190 8.6e-07 57.0 47 59.6
Cc05_g07930 Coffea canephora HOM05D001068 ORTHO05D002190 8.6e-07 57.0 41 58.5
Potri.013G123500 Populus trichocarpa HOM05D001068 ORTHO05D002190 8.6e-07 57.0 47 59.6
MBI07_g06445_MAGBIO Magnolia biondii HOM05D001068 ORTHO05D002190 1.1e-06 56.6 41 63.4
TWI59G1279 Tripterygium wilfordii HOM05D001068 ORTHO05D002190 1.1e-06 56.6 42 57.1
HPP92_027388 Vanilla planifolia HOM05D001068 ORTHO05D002190 1.1e-06 56.6 39 61.5
AL1G16320 Arabidopsis lyrata HOM05D001068 ORTHO05D002190 1.5e-06 56.2 57 50.9
FAN14G5608 Fragaria x ananassa HOM05D001068 ORTHO05D029604 1.5e-06 56.2 40 62.5
FAN18G4470 Fragaria x ananassa HOM05D001068 ORTHO05D029604 1.5e-06 56.2 40 62.5
THA.LOC104800850 Tarenaya hassleriana HOM05D001068 ORTHO05D002190 1.5e-06 56.2 41 56.1
EL10Ac9g20848 Beta vulgaris HOM05D001068 ORTHO05D002190 1.9e-06 55.8 42 52.4
BcaC05g24284 Brassica carinata HOM05D001068 ORTHO05D002190 1.9e-06 55.8 57 49.1
FvH4_5g28500 Fragaria vesca HOM05D001068 ORTHO05D029604 1.9e-06 55.8 40 62.5
Sabra13G0102500 Salix brachista HOM05D001068 ORTHO05D002190 1.9e-06 55.8 42 57.1
Sc06g0009140 Simmondsia chinensis HOM05D001068 ORTHO05D002190 1.9e-06 55.8 42 57.1
BolC5t29403H Brassica oleracea HOM05D001068 ORTHO05D002190 2.5e-06 55.5 42 57.1
Duzib052G0179 Durio zibethinus HOM05D001068 ORTHO05D002190 2.5e-06 55.5 41 56.1
Oeu000574.1 Olea europaea HOM05D001068 ORTHO05D002190 2.5e-06 55.5 41 56.1
BcaB02g06786 Brassica carinata HOM05D001068 ORTHO05D002190 3.3e-06 55.1 42 54.8
AUR62036084 Chenopodium quinoa HOM05D001068 ORTHO05D002190 3.3e-06 55.1 37 62.2
Oeu000573.1 Olea europaea HOM05D001068 ORTHO05D002190 3.3e-06 55.1 41 56.1
Lj8A106G57 Lonicera japonica HOM05D001068 ORTHO05D002190 4.3e-06 54.7 41 53.7
ATR0602G078 Amborella trichopoda HOM05D001068 ORTHO05D002190 7.3e-06 53.9 42 52.4
AUR62036085 Chenopodium quinoa HOM05D001068 ORTHO05D002190 7.3e-06 53.9 37 62.2
SEGI_12300 Sequoiadendron giganteum HOM05D001068 ORTHO05D002190 7.3e-06 53.9 41 51.2
SEGI_33260 Sequoiadendron giganteum HOM05D001068 ORTHO05D002190 7.3e-06 53.9 41 51.2
PGSC0003DMG400010548 Solanum tuberosum HOM05D001068 ORTHO05D002190 7.3e-06 53.9 41 56.1
vmacro12356 Vaccinium macrocarpon HOM05D001068 ORTHO05D020229 7.3e-06 53.9 40 62.5
Gohir.A03G153650 Gossypium hirsutum HOM05D001068 ORTHO05D002190 9.5e-06 53.5 41 56.1
Medtr6g464330 Medicago truncatula HOM05D001068 ORTHO05D020229 9.5e-06 53.5 27 85.2


User provided reference genes

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