Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g021780 Medicago truncatula HOM05D001472 ORTHO05D263400 5.2e-84 314.3 156 100.0
Psat1g146840 Pisum sativum HOM05D001472 ORTHO05D002655 2.5e-17 92.8 128 43.8
Glyma.13G152678 Glycine max HOM05D001472 ORTHO05D002655 3.6e-16 89.0 128 43.8
Glyma.17G028300 Glycine max HOM05D001472 ORTHO05D002655 4.7e-16 88.6 128 43.8
VMungo1309G2403 Vigna mungo HOM05D001472 ORTHO05D002655 1.0e-15 87.4 128 43.0
Phvul.009G239100 Phaseolus vulgaris HOM05D001472 ORTHO05D002655 2.3e-15 86.3 130 43.8
VMungo1215G3442 Vigna mungo HOM05D001472 ORTHO05D002655 3.9e-15 85.5 128 42.2
arahy.Tifrunner.gnm1.ann1.23M4YM Arachis hypogaea HOM05D001472 ORTHO05D002655 8.8e-15 84.3 120 42.5
arahy.Tifrunner.gnm1.ann1.J8SPSJ Arachis hypogaea HOM05D001472 ORTHO05D002655 1.5e-14 83.6 120 42.5
Phvul.003G107000 Phaseolus vulgaris HOM05D001472 ORTHO05D002655 2.6e-14 82.8 128 41.4
CANSAT11G0930 Cannabis sativa HOM05D001472 ORTHO05D002655 3.3e-14 82.4 125 40.8
Lalb_Chr18g0052401 Lupinus albus HOM05D001472 ORTHO05D002655 4.4e-14 82.0 126 42.1
QL11p005215 Quercus lobata HOM05D001472 ORTHO05D002655 4.4e-14 82.0 125 42.4
Lj6g0025404 Lotus japonicus HOM05D001472 ORTHO05D002655 5.7e-14 81.6 127 39.4
TPR.G9243 Trifolium pratense HOM05D001472 ORTHO05D002655 7.4e-14 81.3 124 39.5
CiPaw.07G194000 Carya illinoinensis HOM05D001472 ORTHO05D002655 1.3e-13 80.5 124 43.5
Medtr2g036600 Medicago truncatula HOM05D001472 ORTHO05D002655 1.3e-13 80.5 127 37.8
TWI53G0276 Tripterygium wilfordii HOM05D001472 ORTHO05D002655 1.3e-13 80.5 125 39.2
TWI73G0132 Tripterygium wilfordii HOM05D001472 ORTHO05D002655 1.7e-13 80.1 125 39.2
Lj4g0012621 Lotus japonicus HOM05D001472 ORTHO05D002655 2.2e-13 79.7 120 40.8
QL06p041077 Quercus lobata HOM05D001472 ORTHO05D002655 2.2e-13 79.7 121 40.5
QL06p041099 Quercus lobata HOM05D001472 ORTHO05D002655 4.8e-13 78.6 124 39.5
QL06p041145 Quercus lobata HOM05D001472 ORTHO05D002655 4.8e-13 78.6 117 42.7
Manes.07G091500 Manihot esculenta HOM05D001472 ORTHO05D002655 6.3e-13 78.2 124 38.7
Ca_08012_v3 Cicer arietinum L. HOM05D001472 ORTHO05D002655 8.2e-13 77.8 127 36.2
QL11p005259 Quercus lobata HOM05D001472 ORTHO05D002655 8.2e-13 77.8 116 43.1
Thhalv10020276m.g Eutrema salsugineum HOM05D001472 ORTHO05D002655 1.1e-12 77.4 125 41.6
BcaB06g25588 Brassica carinata HOM05D001472 ORTHO05D002655 1.4e-12 77.0 125 41.6
Prupe.1G082400 Prunus persica HOM05D001472 ORTHO05D002655 1.4e-12 77.0 125 39.2
Prupe.1G083700 Prunus persica HOM05D001472 ORTHO05D002655 1.4e-12 77.0 127 39.4
QL11p005238 Quercus lobata HOM05D001472 ORTHO05D015242 1.4e-12 77.0 125 40.8
Lsat_1_v5_gn_7_53840 Lactuca sativa HOM05D001472 ORTHO05D002655 1.8e-12 76.6 124 40.3
Manes.10G055800 Manihot esculenta HOM05D001472 ORTHO05D002655 1.8e-12 76.6 121 38.8
Sp3g09940 Schrenkiella parvula HOM05D001472 ORTHO05D002655 2.4e-12 76.3 131 39.7
BcaB04g18656 Brassica carinata HOM05D001472 ORTHO05D002655 3.1e-12 75.9 131 38.9
BcaC01g04090 Brassica carinata HOM05D001472 ORTHO05D002655 3.1e-12 75.9 127 40.9
A03p37240 Brassica napus HOM05D001472 ORTHO05D002655 3.1e-12 75.9 131 39.7
CARHR086260 Cardamine hirsuta HOM05D001472 ORTHO05D002655 3.1e-12 75.9 130 40.0
Gohir.A02G091000 Gossypium hirsutum HOM05D001472 ORTHO05D002655 3.1e-12 75.9 122 42.6
Gohir.D02G109500 Gossypium hirsutum HOM05D001472 ORTHO05D002655 3.1e-12 75.9 125 42.4
Hma1.2p1_1086F.1_g255440 Hydrangea macrophylla HOM05D001472 ORTHO05D002655 3.1e-12 75.9 125 40.0
Sabra06G0127700 Salix brachista HOM05D001472 ORTHO05D002655 3.1e-12 75.9 128 39.1
THA.LOC104803944 Tarenaya hassleriana HOM05D001472 ORTHO05D002655 3.1e-12 75.9 125 40.0
BcaB04g21121 Brassica carinata HOM05D001472 ORTHO05D002655 4.1e-12 75.5 125 40.8
BcaC09g48202 Brassica carinata HOM05D001472 ORTHO05D002655 4.1e-12 75.5 125 40.8
Ciclev10007700m.g Citrus clementina HOM05D001472 ORTHO05D002655 4.1e-12 75.5 131 37.4
Lalb_Chr15g0084021 Lupinus albus HOM05D001472 ORTHO05D002655 4.1e-12 75.5 125 38.4
Atru.chr7.849 Acer truncatum HOM05D001472 ORTHO05D002655 5.3e-12 75.1 127 39.4
Cpa.g.sc95.40 Carica papaya HOM05D001472 ORTHO05D002655 5.3e-12 75.1 125 37.6
BraA01t04165Z Brassica rapa HOM05D001472 ORTHO05D002655 7.0e-12 74.7 125 40.8
PSO541G1999 Papaver somniferum HOM05D001472 ORTHO05D002655 7.0e-12 74.7 116 40.5
Gorai.005G123900 Gossypium raimondii HOM05D001472 ORTHO05D002655 9.1e-12 74.3 125 41.6
PGR044G0366 Punica granatum HOM05D001472 ORTHO05D002655 9.1e-12 74.3 118 39.8
AL3G23270 Arabidopsis lyrata HOM05D001472 ORTHO05D002655 1.2e-11 73.9 132 37.9
C03p45100 Brassica napus HOM05D001472 ORTHO05D002655 1.2e-11 73.9 126 38.9
BolC1t05296H Brassica oleracea HOM05D001472 ORTHO05D002655 1.2e-11 73.9 128 38.3
Haze_21945 Corylus avellana HOM05D001472 ORTHO05D002655 1.6e-11 73.6 126 41.3
MSTRG.3730 Avicennia marina HOM05D001472 ORTHO05D002655 2.0e-11 73.2 125 40.0
CSS0013295 Camellia sinensis var. sinensis HOM05D001472 ORTHO05D002655 2.0e-11 73.2 122 40.2
COL.COLO4_07536 Corchorus olitorius HOM05D001472 ORTHO05D002655 2.0e-11 73.2 125 40.8
MELO3C004005.2 Cucumis melo HOM05D001472 ORTHO05D002655 2.0e-11 73.2 121 37.2
ClCG11G012010 Citrullus lanatus HOM05D001472 ORTHO05D002655 2.6e-11 72.8 121 37.2
Gohir.A10G142700 Gossypium hirsutum HOM05D001472 ORTHO05D002655 2.6e-11 72.8 124 41.1
Potri.018G090600 Populus trichocarpa HOM05D001472 ORTHO05D002655 2.6e-11 72.8 117 38.5
TAR625G0316 Trochodendron aralioides HOM05D001472 ORTHO05D002655 2.6e-11 72.8 132 37.1
GSVIVG01019319001 Vitis vinifera HOM05D001472 ORTHO05D002655 3.5e-11 72.4 121 38.8
Aa31sc52G240 Aethionema arabicum HOM05D001472 ORTHO05D002655 4.5e-11 72.0 127 37.0
Aqoxy6G00349 Aquilegia oxysepala HOM05D001472 ORTHO05D002655 4.5e-11 72.0 138 39.1
Duzib212G0443 Durio zibethinus HOM05D001472 ORTHO05D002655 4.5e-11 72.0 124 38.7
Sed0000139 Sechium edule HOM05D001472 ORTHO05D002655 4.5e-11 72.0 127 35.4
GSVIVG01031124001 Vitis vinifera HOM05D001472 ORTHO05D002655 4.5e-11 72.0 121 39.7
AT3G11710 Arabidopsis thaliana HOM05D001472 ORTHO05D002655 5.9e-11 71.6 125 38.4
Carub.0003s1105 Capsella rubella HOM05D001472 ORTHO05D002655 5.9e-11 71.6 121 38.0
COL.COLO4_14564 Corchorus olitorius HOM05D001472 ORTHO05D002655 5.9e-11 71.6 125 40.8
HanXRQChr09g0244411 Helianthus annuus HOM05D001472 ORTHO05D002655 5.9e-11 71.6 124 38.7
PSO675G4629 Papaver somniferum HOM05D001472 ORTHO05D002655 5.9e-11 71.6 115 40.0
Potri.018G090400 Populus trichocarpa HOM05D001472 ORTHO05D002655 5.9e-11 71.6 115 39.1
Dinv19558 Davidia involucrata HOM05D001472 ORTHO05D002655 7.7e-11 71.2 121 38.8
Eucgr.C00141 Eucalyptus grandis HOM05D001472 ORTHO05D002655 7.7e-11 71.2 122 37.7
Gohir.D10G124000 Gossypium hirsutum HOM05D001472 ORTHO05D002655 7.7e-11 71.2 132 38.6
Gorai.011G136900 Gossypium raimondii HOM05D001472 ORTHO05D002655 7.7e-11 71.2 132 38.6
vmacro06005 Vaccinium macrocarpon HOM05D001472 ORTHO05D002655 1.0e-10 70.9 119 39.5
CSS0036832 Camellia sinensis var. sinensis HOM05D001472 ORTHO05D002655 1.3e-10 70.5 109 40.4
CsaV3_2G008510 Cucumis sativus L. HOM05D001472 ORTHO05D002655 1.3e-10 70.5 121 37.2
HanXRQChr07g0202161 Helianthus annuus HOM05D001472 ORTHO05D002655 1.3e-10 70.5 124 37.9
EL10Ac3g05985 Beta vulgaris HOM05D001472 ORTHO05D002655 1.7e-10 70.1 127 37.0
EL10Ac3g05987 Beta vulgaris HOM05D001472 ORTHO05D002655 1.7e-10 70.1 127 37.0
THA.LOC104819974 Tarenaya hassleriana HOM05D001472 ORTHO05D002655 1.7e-10 70.1 119 39.5
Migut.E00363 Erythranthe guttata HOM05D001472 ORTHO05D002655 2.2e-10 69.7 125 36.0
Potri.006G166000 Populus trichocarpa HOM05D001472 ORTHO05D002655 2.2e-10 69.7 115 38.3
SHI02889 Sapria himalayana HOM05D001472 ORTHO05D002655 2.2e-10 69.7 124 38.7
TAR626G0028 Trochodendron aralioides HOM05D001472 ORTHO05D002655 2.2e-10 69.7 122 38.5
SGA_v2.0_scaffold38G14974 Striga asiatica HOM05D001472 ORTHO05D002655 3.8e-10 68.9 125 37.6
Thecc.04G166900 Theobroma cacao HOM05D001472 ORTHO05D002655 3.8e-10 68.9 131 38.9
MSTRG.13548 Avicennia marina HOM05D001472 ORTHO05D002655 5.0e-10 68.6 125 38.4
Medtr4g127770 Medicago truncatula HOM05D001472 ORTHO05D002655 5.0e-10 68.6 121 40.5
Nitab4.5_0000158g0150 Nicotiana tabacum HOM05D001472 ORTHO05D002655 5.0e-10 68.6 128 36.7
ECA240G4268 Erigeron canadensis HOM05D001472 ORTHO05D002655 6.5e-10 68.2 123 35.8
PGR044G0930 Punica granatum HOM05D001472 ORTHO05D002655 8.5e-10 67.8 114 37.7
RcHm_v2.0_Chr4g0401131 Rosa chinensis HOM05D001472 ORTHO05D002655 8.5e-10 67.8 124 37.9
Sabra18G0077800 Salix brachista HOM05D001472 ORTHO05D002655 1.1e-09 67.4 113 38.9
Nn4g24615 Nelumbo nucifera HOM05D001472 ORTHO05D002655 1.5e-09 67.0 117 33.3
Actinidia25822 Actinidia chinensis HOM05D001472 ORTHO05D002655 1.9e-09 66.6 120 38.3
Sed0016659 Sechium edule HOM05D001472 ORTHO05D002655 1.9e-09 66.6 121 35.5
Hund12017 Selenicereus undatus HOM05D001472 ORTHO05D002655 1.9e-09 66.6 121 36.4
Rhsim03G0265300 Rhododendron simsii HOM05D001472 ORTHO05D002655 2.5e-09 66.2 118 34.7
vmacro19871 Vaccinium macrocarpon HOM05D001472 ORTHO05D002655 2.5e-09 66.2 119 38.7
Ah.13g072790 Amaranthus hybridus HOM05D001472 ORTHO05D002655 3.2e-09 65.9 131 35.1
SalBow7G0701 Salvia bowleyana HOM05D001472 ORTHO05D002655 3.2e-09 65.9 125 36.0
Cc07_g21030 Coffea canephora HOM05D001472 ORTHO05D002655 4.2e-09 65.5 121 38.0
Duzib151G0853 Durio zibethinus HOM05D001472 ORTHO05D002655 4.2e-09 65.5 121 38.8
MD13G1248200 Malus domestica HOM05D001472 ORTHO05D002655 5.5e-09 65.1 121 38.0
AUR62002331 Chenopodium quinoa HOM05D001472 ORTHO05D002655 7.2e-09 64.7 127 34.6
AUR62023857 Chenopodium quinoa HOM05D001472 ORTHO05D002655 7.2e-09 64.7 127 34.6
Ah.07g202240 Amaranthus hybridus HOM05D001472 ORTHO05D002655 9.4e-09 64.3 132 34.8
SGA_v2.0_scaffold36G14548 Striga asiatica HOM05D001472 ORTHO05D002655 9.4e-09 64.3 125 35.2
CANSAT35G0176 Cannabis sativa HOM05D001472 ORTHO05D002655 1.6e-08 63.5 121 38.0
SEGI_22674 Sequoiadendron giganteum HOM05D001472 ORTHO05D002655 2.1e-08 63.2 119 36.1
BolC3t16772H Brassica oleracea HOM05D001472 ORTHO05D002655 2.7e-08 62.8 145 33.8
BraA03t12884Z Brassica rapa HOM05D001472 ORTHO05D002655 2.7e-08 62.8 155 33.5
SEGI_37908 Sequoiadendron giganteum HOM05D001472 ORTHO05D002655 2.7e-08 62.8 118 36.4
FAN17G1624 Fragaria x ananassa HOM05D001472 ORTHO05D002655 3.6e-08 62.4 130 35.4
MD16G1255000 Malus domestica HOM05D001472 ORTHO05D002655 3.6e-08 62.4 121 36.4
SalBow1G4451 Salvia bowleyana HOM05D001472 ORTHO05D002655 4.7e-08 62.0 127 34.6
Zm00001eb049290 Zea mays HOM05D001472 ORTHO05D002655 4.7e-08 62.0 121 37.2
DCAR_017981 Daucus carota HOM05D001472 ORTHO05D002655 8.0e-08 61.2 110 40.0
Pp3c4_7510 Physcomitrium patens HOM05D001472 ORTHO05D002655 8.0e-08 61.2 117 35.0
Hund03172 Selenicereus undatus HOM05D001472 ORTHO05D002655 8.0e-08 61.2 131 34.4
FvH4_4g07860 Fragaria vesca HOM05D001472 ORTHO05D002655 1.0e-07 60.8 130 34.6
FAN12G1162 Fragaria x ananassa HOM05D001472 ORTHO05D002655 1.0e-07 60.8 130 34.6
FAN22G1251 Fragaria x ananassa HOM05D001472 ORTHO05D002655 1.0e-07 60.8 124 35.5
ATR1136G155 Amborella trichopoda HOM05D001472 ORTHO05D002655 1.4e-07 60.5 129 34.9
AL5G43040 Arabidopsis lyrata HOM05D001472 ORTHO05D002655 1.8e-07 60.1 113 35.4
Migut.L01040 Erythranthe guttata HOM05D001472 ORTHO05D002655 1.8e-07 60.1 124 33.9
SalBow5G3728 Salvia bowleyana HOM05D001472 ORTHO05D002655 1.8e-07 60.1 127 33.9
FAN07G2522 Fragaria x ananassa HOM05D001472 ORTHO05D002655 2.3e-07 59.7 130 34.6
Gorai.006G183200 Gossypium raimondii HOM05D001472 ORTHO05D002655 2.3e-07 59.7 133 34.6
MBI06_g35964_MAGBIO Magnolia biondii HOM05D001472 ORTHO05D002655 2.3e-07 59.7 131 34.4
Nitab4.5_0001111g0020 Nicotiana tabacum HOM05D001472 ORTHO05D002655 2.3e-07 59.7 131 35.9
PSO210G2861 Papaver somniferum HOM05D001472 ORTHO05D002655 2.3e-07 59.7 124 35.5
CDE10G1081 Ceratophyllum demersum HOM05D001472 ORTHO05D002655 3.0e-07 59.3 122 35.2
Nitab4.5_0003132g0020 Nicotiana tabacum HOM05D001472 ORTHO05D002655 3.0e-07 59.3 131 34.4
Zm00001eb219500 Zea mays HOM05D001472 ORTHO05D002655 3.0e-07 59.3 121 38.0
Actinidia28154 Actinidia chinensis HOM05D001472 ORTHO05D002655 5.2e-07 58.5 108 37.0
CAN.G65.176 Capsicum annuum HOM05D001472 ORTHO05D002655 5.2e-07 58.5 122 35.2
Gohir.D09G161500 Gossypium hirsutum HOM05D001472 ORTHO05D002655 6.7e-07 58.2 121 37.2
PSO478G1175 Papaver somniferum HOM05D001472 ORTHO05D002655 8.8e-07 57.8 118 33.9
unitig_27.g25184 Utricularia gibba HOM05D001472 ORTHO05D002655 2.0e-06 56.6 123 30.9
PGSC0003DMG400026909 Solanum tuberosum HOM05D001472 ORTHO05D002655 2.6e-06 56.2 124 37.1
Gohir.A09G165900 Gossypium hirsutum HOM05D001472 ORTHO05D002655 3.3e-06 55.8 133 33.1
CAN.G2017.1 Capsicum annuum HOM05D001472 ORTHO05D002655 4.4e-06 55.5 125 28.8
Gohir.A02G091100 Gossypium hirsutum HOM05D001472 ORTHO05D002655 4.4e-06 55.5 57 49.1
Lj3C269T1 Lonicera japonica HOM05D001472 ORTHO05D002655 4.4e-06 55.5 132 36.4
Lj3C272G7 Lonicera japonica HOM05D001472 ORTHO05D002655 4.4e-06 55.5 132 36.4
Solyc06g073330.4 Solanum lycopersicum HOM05D001472 ORTHO05D002655 4.4e-06 55.5 124 36.3
Sopen06g029710 Solanum pennellii HOM05D001472 ORTHO05D002655 4.4e-06 55.5 124 36.3
Thecc.05G014000 Theobroma cacao HOM05D001472 ORTHO05D002655 5.7e-06 55.1 131 32.1


User provided reference genes

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