Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g011420 Medicago truncatula HOM05D004931 ORTHO05D006579 1.0e-168 596.7 299 100.0
TPR.G19613 Trifolium pratense HOM05D004931 ORTHO05D006579 1.5e-159 566.2 299 94.6
Psat1g210240 Pisum sativum HOM05D004931 ORTHO05D006579 1.3e-152 543.1 299 90.6
Ca_00224_v3 Cicer arietinum L. HOM05D004931 ORTHO05D006579 6.6e-152 540.8 297 91.6
Lj6g0004184 Lotus japonicus HOM05D004931 ORTHO05D006579 4.7e-142 508.1 299 85.6
Glyma.15G065800 Glycine max HOM05D004931 ORTHO05D006579 4.0e-141 505.0 302 84.4
Glyma.13G248100 Glycine max HOM05D004931 ORTHO05D006579 8.9e-141 503.8 302 83.8
VMungo0540G0694 Vigna mungo HOM05D004931 ORTHO05D006579 5.8e-140 501.1 303 83.2
arahy.Tifrunner.gnm1.ann1.BF7HNV Arachis hypogaea HOM05D004931 ORTHO05D006579 4.1e-138 495.0 299 82.3
arahy.Tifrunner.gnm1.ann1.Q671IP Arachis hypogaea HOM05D004931 ORTHO05D006579 5.4e-138 494.6 299 82.3
Phvul.006G193900 Phaseolus vulgaris HOM05D004931 ORTHO05D006579 1.0e-136 490.3 304 81.2
Prupe.1G215300 Prunus persica HOM05D004931 ORTHO05D006579 4.0e-133 478.4 303 78.5
FvH4_4g22670 Fragaria vesca HOM05D004931 ORTHO05D006579 9.9e-132 473.8 307 77.5
Actinidia34703 Actinidia chinensis HOM05D004931 ORTHO05D006579 4.9e-131 471.5 306 78.4
Dinv06619 Davidia involucrata HOM05D004931 ORTHO05D006579 8.4e-131 470.7 303 77.9
CiPaw.05G101400 Carya illinoinensis HOM05D004931 ORTHO05D006579 5.4e-130 468.0 303 77.6
Cpa.g.sc38.82 Carica papaya HOM05D004931 ORTHO05D006579 1.0e-128 463.8 302 76.5
Haze_12500 Corylus avellana HOM05D004931 ORTHO05D006579 8.7e-128 460.7 304 77.3
COL.COLO4_21767 Corchorus olitorius HOM05D004931 ORTHO05D006579 2.5e-127 459.1 304 76.0
CsaV3_4G002250 Cucumis sativus L. HOM05D004931 ORTHO05D006579 3.3e-127 458.8 303 74.9
Gohir.A03G152300 Gossypium hirsutum HOM05D004931 ORTHO05D006579 3.3e-127 458.8 278 80.9
Gohir.D02G175400 Gossypium hirsutum HOM05D004931 ORTHO05D006579 4.3e-127 458.4 278 80.9
Cfa009447 Carpinus fangiana HOM05D004931 ORTHO05D006579 5.6e-127 458.0 303 76.6
Ciclev10005352m.g Citrus clementina HOM05D004931 ORTHO05D006579 5.6e-127 458.0 278 80.6
Thecc.02G192700 Theobroma cacao HOM05D004931 ORTHO05D006579 9.6e-127 457.2 304 75.3
TAR622G0753 Trochodendron aralioides HOM05D004931 ORTHO05D006579 9.6e-127 457.2 303 74.6
MELO3C017814.2 Cucumis melo HOM05D004931 ORTHO05D006579 2.1e-126 456.1 303 74.3
Gorai.005G197000 Gossypium raimondii HOM05D004931 ORTHO05D006579 3.6e-126 455.3 278 80.6
CANSAT01G2308 Cannabis sativa HOM05D004931 ORTHO05D006579 6.2e-126 454.5 302 76.2
Atru.chr12.1413 Acer truncatum HOM05D004931 ORTHO05D006579 8.1e-126 454.1 278 78.1
CSS0024647 Camellia sinensis var. sinensis HOM05D004931 ORTHO05D006579 8.1e-126 454.1 303 74.3
QL03p049374 Quercus lobata HOM05D004931 ORTHO05D006579 8.1e-126 454.1 325 71.7
MD00G1177400 Malus domestica HOM05D004931 ORTHO05D006579 5.2e-125 451.4 268 82.5
Potri.003G162600 Populus trichocarpa HOM05D004931 ORTHO05D006579 6.9e-125 451.1 303 76.6
Manes.08G101500 Manihot esculenta HOM05D004931 ORTHO05D006579 2.6e-124 449.1 287 77.0
Sed0000722 Sechium edule HOM05D004931 ORTHO05D006579 2.9e-123 445.7 305 73.4
TWI36G0173 Tripterygium wilfordii HOM05D004931 ORTHO05D006579 2.9e-123 445.7 310 74.2
Cc11_g15020 Coffea canephora HOM05D004931 ORTHO05D006579 4.9e-123 444.9 304 75.0
TAR374G0634 Trochodendron aralioides HOM05D004931 ORTHO05D006579 8.4e-123 444.1 304 74.0
GSVIVG01001087001 Vitis vinifera HOM05D004931 ORTHO05D006579 3.2e-122 442.2 306 72.5
AUR62005713 Chenopodium quinoa HOM05D004931 ORTHO05D006579 5.4e-122 441.4 277 77.3
Duzib248G0794 Durio zibethinus HOM05D004931 ORTHO05D006579 9.3e-122 440.7 269 80.3
Nn3g16276 Nelumbo nucifera HOM05D004931 ORTHO05D006579 2.1e-121 439.5 279 77.4
MD13G1130400 Malus domestica HOM05D004931 ORTHO05D006579 6.0e-121 438.0 276 78.3
Lj6A838G27 Lonicera japonica HOM05D004931 ORTHO05D006579 7.8e-121 437.6 339 67.6
PSO478G0594 Papaver somniferum HOM05D004931 ORTHO05D006579 2.3e-120 436.0 293 73.4
ECA238G3692 Erigeron canadensis HOM05D004931 ORTHO05D006579 5.1e-120 434.9 288 74.7
PSO017G2176 Papaver somniferum HOM05D004931 ORTHO05D006579 5.1e-120 434.9 293 72.7
Potri.001G067400 Populus trichocarpa HOM05D004931 ORTHO05D006579 5.1e-120 434.9 273 79.5
RcHm_v2.0_Chr4g0428911 Rosa chinensis HOM05D004931 ORTHO05D006579 5.6e-119 431.4 271 79.7
FAN17G1056 Fragaria x ananassa HOM05D004931 ORTHO05D006579 9.6e-119 430.6 286 75.9
vmacro10419 Vaccinium macrocarpon HOM05D004931 ORTHO05D006579 9.6e-119 430.6 322 70.5
HanXRQChr17g0559151 Helianthus annuus HOM05D004931 ORTHO05D006579 1.6e-118 429.9 298 72.8
Aqoxy5G03136 Aquilegia oxysepala HOM05D004931 ORTHO05D006579 2.8e-118 429.1 277 74.0
Migut.K01057 Erythranthe guttata HOM05D004931 ORTHO05D006579 6.2e-118 427.9 280 75.7
MSTRG.455 Avicennia marina HOM05D004931 ORTHO05D006579 1.1e-117 427.2 301 70.8
PGR102G0149 Punica granatum HOM05D004931 ORTHO05D006579 1.1e-117 427.2 305 71.1
AUR62028841 Chenopodium quinoa HOM05D004931 ORTHO05D006579 1.4e-117 426.8 268 78.4
ClCG07G011910 Citrullus lanatus HOM05D004931 ORTHO05D006579 1.8e-117 426.4 307 72.0
Manes.09G188000 Manihot esculenta HOM05D004931 ORTHO05D006579 1.8e-117 426.4 300 72.0
Sp1g24310 Schrenkiella parvula HOM05D004931 ORTHO05D006579 2.4e-117 426.0 301 70.8
Carub.0001s2655 Capsella rubella HOM05D004931 ORTHO05D006579 3.1e-117 425.6 299 70.2
AL1G41640 Arabidopsis lyrata HOM05D004931 ORTHO05D006579 6.9e-117 424.5 300 70.0
Rhsim09G0128100 Rhododendron simsii HOM05D004931 ORTHO05D006579 2.0e-116 422.9 358 64.5
Thhalv10008031m.g Eutrema salsugineum HOM05D004931 ORTHO05D006579 3.4e-116 422.2 304 69.4
Lsat_1_v5_gn_2_17061 Lactuca sativa HOM05D004931 ORTHO05D006579 7.6e-116 421.0 286 72.7
BolC3t19725H Brassica oleracea HOM05D004931 ORTHO05D006579 2.2e-115 419.5 305 70.5
CARHR027590 Cardamine hirsuta HOM05D004931 ORTHO05D006579 2.2e-115 419.5 301 69.8
AT1G28120 Arabidopsis thaliana HOM05D004931 ORTHO05D006579 4.9e-115 418.3 301 69.4
Solyc04g045480.3 Solanum lycopersicum HOM05D004931 ORTHO05D006579 6.4e-115 417.9 293 68.9
Aa31sc45G20 Aethionema arabicum HOM05D004931 ORTHO05D006579 1.1e-114 417.2 302 70.2
EL10Ac6g13609 Beta vulgaris HOM05D004931 ORTHO05D006579 1.1e-114 417.2 277 74.0
BcaC01g00008 Brassica carinata HOM05D004931 ORTHO05D006579 1.1e-114 417.2 305 69.8
Sc14g0009240 Simmondsia chinensis HOM05D004931 ORTHO05D006579 1.4e-114 416.8 299 70.9
THA.LOC104814207 Tarenaya hassleriana HOM05D004931 ORTHO05D006579 5.4e-114 414.8 303 68.6
BcaB03g12136 Brassica carinata HOM05D004931 ORTHO05D006579 1.2e-113 413.7 300 70.7
FAN07G1868 Fragaria x ananassa HOM05D004931 ORTHO05D006579 6.0e-113 411.4 298 71.8
Sopen04g017340 Solanum pennellii HOM05D004931 ORTHO05D006579 7.9e-113 411.0 291 68.0
SalBow2G3164 Salvia bowleyana HOM05D004931 ORTHO05D006579 1.0e-112 410.6 291 72.5
SGA_v2.0_scaffold80G25951 Striga asiatica HOM05D004931 ORTHO05D006579 2.3e-112 409.5 303 67.7
SGA_v2.0_scaffold81G25976 Striga asiatica HOM05D004931 ORTHO05D006579 6.7e-112 407.9 285 72.3
CDE05G1203 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 9.6e-111 404.1 281 69.8
C03p74760 Brassica napus HOM05D004931 ORTHO05D006579 1.3e-110 403.7 330 64.8
A08p25870 Brassica napus HOM05D004931 ORTHO05D006579 8.1e-110 401.0 325 64.9
BcaB03g13953 Brassica carinata HOM05D004931 ORTHO05D006579 3.1e-109 399.1 299 69.2
CDE05G3195 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 2.6e-108 396.0 281 68.0
unitig_8.g2895 Utricularia gibba HOM05D004931 ORTHO05D006579 5.8e-108 394.8 303 65.7
DCAR_024966 Daucus carota HOM05D004931 ORTHO05D006579 1.9e-106 389.8 304 66.8
Ah.02g131420 Amaranthus hybridus HOM05D004931 ORTHO05D006579 7.1e-106 387.9 279 68.5
BraA08t34541Z Brassica rapa HOM05D004931 ORTHO05D006579 1.2e-105 387.1 325 63.7
HPP92_011736 Vanilla planifolia HOM05D004931 ORTHO05D006579 1.6e-105 386.7 282 67.0
Os08g0537800 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D006579 2.7e-105 386.0 258 71.7
FAN12G1488 Fragaria x ananassa HOM05D004931 ORTHO05D006579 8.7e-104 380.9 286 69.6
Nitab4.5_0007183g0010 Nicotiana tabacum HOM05D004931 ORTHO05D006579 5.6e-103 378.3 287 66.6
BolC7t42231H Brassica oleracea HOM05D004931 ORTHO05D006579 4.0e-101 372.1 262 70.2
C07p17280 Brassica napus HOM05D004931 ORTHO05D006579 2.6e-100 369.4 262 70.2
Lalb_Chr15g0090151 Lupinus albus HOM05D004931 ORTHO05D006579 4.5e-100 368.6 202 89.6
BcaC06g35334 Brassica carinata HOM05D004931 ORTHO05D006579 1.1e-98 364.0 262 69.5
SEGI_13679 Sequoiadendron giganteum HOM05D004931 ORTHO05D006579 1.9e-98 363.2 291 62.5
MBI07_g35974_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 4.2e-98 362.1 278 66.2
ATR0582G144 Amborella trichopoda HOM05D004931 ORTHO05D006579 6.0e-97 358.2 277 65.0
HPP92_011677 Vanilla planifolia HOM05D004931 ORTHO05D006579 5.1e-96 355.1 247 68.8
Hund26708 Selenicereus undatus HOM05D004931 ORTHO05D006579 2.2e-94 349.7 258 68.6
CAN.G465.9 Capsicum annuum HOM05D004931 ORTHO05D006579 1.8e-93 346.7 262 66.4
Peaxi162Scf00128g01757 Petunia axillaris HOM05D004931 ORTHO05D006579 5.3e-93 345.1 250 68.8
Sabra01G0046800 Salix brachista HOM05D004931 ORTHO05D006579 2.9e-91 339.3 249 71.1
Zm00001eb175560 Zea mays HOM05D004931 ORTHO05D006579 5.0e-91 338.6 261 65.1
Mapoly0005s0248 Marchantia polymorpha HOM05D004931 ORTHO05D006579 1.1e-90 337.4 272 60.7
Actinidia31350 Actinidia chinensis HOM05D004931 ORTHO05D006579 1.2e-89 334.0 306 61.4
Nitab4.5_0001408g0040 Nicotiana tabacum HOM05D004931 ORTHO05D006579 1.0e-88 330.9 238 70.6
SMO358G0085 Selaginella moellendorffii HOM05D004931 ORTHO05D006579 1.9e-87 326.6 248 63.7
AagrBONN_evm.TU.Sc2ySwM_368.2426 Anthoceros agrestis HOM05D004931 ORTHO05D006579 1.3e-86 323.9 248 64.5
Pp3c5_2520 Physcomitrium patens HOM05D004931 ORTHO05D006579 8.5e-83 311.2 270 59.3
MBI10_g42797_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 7.2e-82 308.1 269 59.5
Dinv02758 Davidia involucrata HOM05D004931 ORTHO05D006579 9.4e-82 307.8 215 71.6
Sed0016914 Sechium edule HOM05D004931 ORTHO05D006579 6.7e-80 301.6 215 73.0
AagrBONN_evm.TU.Sc2ySwM_26.3 Anthoceros agrestis HOM05D004931 ORTHO05D006579 7.4e-79 298.1 221 66.1
Duzib132G0410 Durio zibethinus HOM05D004931 ORTHO05D006579 1.2e-76 290.8 257 60.7
Pp3c6_24540 Physcomitrium patens HOM05D004931 ORTHO05D006579 2.6e-76 289.7 248 59.7
PSO832G0491 Papaver somniferum HOM05D004931 ORTHO05D006579 4.5e-68 262.3 219 61.2
A07p11470 Brassica napus HOM05D004931 ORTHO05D006579 1.4e-61 240.7 302 48.7
Cre10.g441500 Chlamydomonas reinhardtii HOM05D004931 ORTHO05D006579 9.1e-61 238.0 281 45.2
BraA07t28936Z Brassica rapa HOM05D004931 ORTHO05D006579 1.0e-59 234.6 251 52.6
Lalb_Chr18g0060061 Lupinus albus HOM05D004931 ORTHO05D006579 1.8e-56 223.8 120 88.3
Eucgr.B03557 Eucalyptus grandis HOM05D004931 ORTHO05D006579 3.6e-49 199.5 121 81.0
Haze_27431 Corylus avellana HOM05D004931 ORTHO05D006579 9.8e-47 191.4 273 41.8
PGSC0003DMG402006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 4.9e-46 189.1 120 74.2
PRCOL_00001027 Prasinoderma coloniale HOM05D004931 ORTHO05D006579 3.5e-44 183.0 257 41.6
TPR.G19900 Trifolium pratense HOM05D004931 ORTHO05D006579 7.8e-44 181.8 105 86.7
TPR.G382 Trifolium pratense HOM05D004931 ORTHO05D006579 2.5e-42 176.8 91 92.3
PGSC0003DMG401006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 1.4e-40 171.0 146 59.6
PSO170G5257 Papaver somniferum HOM05D004650 ORTHO05D005715 1.6e-36 157.5 118 64.4
CBR_g45420 Chara braunii HOM05D000019 ORTHO05D000048 5.0e-35 152.5 156 55.8
TPR.G399 Trifolium pratense HOM05D004931 ORTHO05D006579 2.5e-34 150.2 105 73.3
RcHm_v2.0_Chr7g0205601 Rosa chinensis HOM05D004931 ORTHO05D006579 3.1e-32 143.3 88 77.3
Sc17g0004710 Simmondsia chinensis HOM05D004931 ORTHO05D006579 1.7e-27 127.5 91 68.1
TPR.G27432 Trifolium pratense HOM05D004931 ORTHO05D006579 1.5e-23 114.4 87 70.1
Zm00001eb406040 Zea mays HOM05D004931 ORTHO05D006579 1.3e-22 111.3 287 28.2
ECA238G1930 Erigeron canadensis HOM05D000406 ORTHO05D006918 7.1e-21 105.5 75 66.7
Os04g0652600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D299584 6.0e-20 102.4 317 26.8
Zm00001eb242070 Zea mays HOM05D004931 ORTHO05D037234 1.0e-19 101.7 300 29.3
Os02g0521600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D037234 1.3e-19 101.3 262 30.5
Zm00001eb037020 Zea mays HOM05D004931 ORTHO05D006579 1.4e-16 91.3 61 68.9
Zm00001eb406050 Zea mays HOM05D004931 ORTHO05D444756 2.4e-16 90.5 211 28.4
Lalb_Chr18g0060051 Lupinus albus HOM05D004931 ORTHO05D006579 6.4e-14 82.4 47 80.9
Cre06.g253755 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D145199 1.9e-13 80.9 310 23.9
Cre06.g253459 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D146359 2.4e-13 80.5 310 23.9
BolC2t10441H Brassica oleracea HOM05D004931 ORTHO05D027277 3.2e-13 80.1 75 58.7
C01p27720 Brassica napus HOM05D004931 ORTHO05D027277 1.3e-11 74.7 87 46.0
FAN01G2784 Fragaria x ananassa HOM05D005362 ORTHO05D006895 8.7e-11 72.0 140 35.0
Solyc03g059395.1 Solanum lycopersicum HOM05D004931 ORTHO05D006579 1.1e-10 71.6 54 57.4
BcaB03g12135 Brassica carinata HOM05D004931 ORTHO05D006579 2.1e-09 67.4 76 51.3
Os02g0513800 Oryza sativa ssp. japonica HOM05D023198 ORTHO05D294263 1.8e-08 64.3 233 23.6
BcaC03g16580 Brassica carinata HOM05D004931 ORTHO05D027277 3.1e-08 63.5 59 61.0
Sopen03g014100 Solanum pennellii HOM05D004931 ORTHO05D006579 3.8e-06 56.6 39 64.1


User provided reference genes

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