Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g007770 Medicago truncatula HOM05D004799 ORTHO05D005500 7.8e-110 400.6 219 100.0
Psat1g220000 Pisum sativum HOM05D004799 ORTHO05D005500 7.3e-92 340.9 218 88.5
TPR.G2141 Trifolium pratense HOM05D004799 ORTHO05D005500 6.2e-91 337.8 215 88.4
Ca_00089_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 1.1e-76 290.4 263 69.6
Ca_29928_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 1.1e-76 290.4 263 69.6
Lj6g0003329 Lotus japonicus HOM05D004799 ORTHO05D005500 4.0e-66 255.4 219 71.7
Lalb_Chr12g0204381 Lupinus albus HOM05D004799 ORTHO05D005500 1.5e-65 253.4 219 69.4
arahy.Tifrunner.gnm1.ann1.BG3XJE Arachis hypogaea HOM05D004799 ORTHO05D005500 3.4e-65 252.3 220 69.1
arahy.Tifrunner.gnm1.ann1.ZS42GJ Arachis hypogaea HOM05D004799 ORTHO05D005500 3.4e-65 252.3 220 69.1
Lalb_Chr07g0185691 Lupinus albus HOM05D004799 ORTHO05D005500 9.3e-63 244.2 233 64.4
Cfa005544 Carpinus fangiana HOM05D004799 ORTHO05D005500 2.1e-59 233.0 212 62.7
Haze_01626 Corylus avellana HOM05D004799 ORTHO05D005500 1.4e-58 230.3 213 62.9
GSVIVG01023017001 Vitis vinifera HOM05D004799 ORTHO05D005500 1.5e-57 226.9 230 60.4
Cpa.g.sc2.26 Carica papaya HOM05D004799 ORTHO05D005500 1.0e-56 224.2 215 61.9
Gohir.A01G177000 Gossypium hirsutum HOM05D004799 ORTHO05D005500 1.7e-56 223.4 213 63.8
Lj5A248T74 Lonicera japonica HOM05D004799 ORTHO05D005500 1.7e-56 223.4 213 63.8
Manes.10G132000 Manihot esculenta HOM05D004799 ORTHO05D005500 2.2e-56 223.0 216 63.4
Duzib132G0636 Durio zibethinus HOM05D004799 ORTHO05D005500 2.9e-56 222.6 214 64.0
Duzib248G0546 Durio zibethinus HOM05D004799 ORTHO05D005500 2.9e-56 222.6 216 63.0
CiPaw.06G148900 Carya illinoinensis HOM05D004799 ORTHO05D005500 3.8e-56 222.2 216 62.0
Hma1.2p1_0217F.1_g091930 Hydrangea macrophylla HOM05D004799 ORTHO05D005500 1.1e-55 220.7 225 60.0
Manes.07G013800 Manihot esculenta HOM05D004799 ORTHO05D005500 1.1e-55 220.7 214 63.6
Gohir.D01G167800 Gossypium hirsutum HOM05D004799 ORTHO05D005500 1.9e-55 219.9 213 63.4
TAR376G0767 Trochodendron aralioides HOM05D004799 ORTHO05D005500 2.5e-55 219.5 228 59.6
Gorai.002G208500 Gossypium raimondii HOM05D004799 ORTHO05D005500 4.2e-55 218.8 213 63.4
CiPaw.05G042800 Carya illinoinensis HOM05D004799 ORTHO05D005500 1.2e-54 217.2 257 53.3
PGSC0003DMG400023776 Solanum tuberosum HOM05D004799 ORTHO05D005500 1.2e-54 217.2 225 59.6
Gohir.A03G210900 Gossypium hirsutum HOM05D004799 ORTHO05D005500 1.6e-54 216.9 214 62.6
Sopen01g046960 Solanum pennellii HOM05D004799 ORTHO05D005500 1.6e-54 216.9 225 59.6
MD08G1225100 Malus domestica HOM05D004799 ORTHO05D005500 2.7e-54 216.1 211 63.0
TAR628G0692 Trochodendron aralioides HOM05D004799 ORTHO05D005500 7.9e-54 214.5 225 58.7
Glyma.08G128300 Glycine max HOM05D004799 ORTHO05D005500 1.0e-53 214.2 221 61.1
Dinv19352 Davidia involucrata HOM05D004799 ORTHO05D005500 1.8e-53 213.4 221 59.3
Peaxi162Scf00011g00139 Petunia axillaris HOM05D004799 ORTHO05D005500 1.8e-53 213.4 208 62.0
VMungo0251G3647 Vigna mungo HOM05D004799 ORTHO05D005500 3.0e-53 212.6 224 59.4
Ciclev10002345m.g Citrus clementina HOM05D004799 ORTHO05D005500 3.9e-53 212.2 217 59.0
FvH4_5g30080 Fragaria vesca HOM05D004799 ORTHO05D005500 5.1e-53 211.8 212 60.8
MD15G1418700 Malus domestica HOM05D004799 ORTHO05D005500 5.1e-53 211.8 211 63.0
Potri.001G209100 Populus trichocarpa HOM05D004799 ORTHO05D005500 5.1e-53 211.8 215 59.5
QL02p098623 Quercus lobata HOM05D004799 ORTHO05D005500 6.7e-53 211.5 246 56.5
THA.LOC104809537 Tarenaya hassleriana HOM05D004799 ORTHO05D005500 8.7e-53 211.1 227 58.6
Migut.B00668 Erythranthe guttata HOM05D004799 ORTHO05D005500 1.1e-52 210.7 204 59.3
FAN04G2475 Fragaria x ananassa HOM05D004799 ORTHO05D005500 1.1e-52 210.7 212 60.4
FAN13G3307 Fragaria x ananassa HOM05D004799 ORTHO05D005500 4.3e-52 208.8 212 60.4
MSTRG.27841 Avicennia marina HOM05D004799 ORTHO05D005500 5.7e-52 208.4 207 58.9
Gohir.D02G232500 Gossypium hirsutum HOM05D004799 ORTHO05D005500 7.4e-52 208.0 206 60.7
Gorai.005G260300 Gossypium raimondii HOM05D004799 ORTHO05D005500 1.6e-51 206.8 206 60.2
Sabra03G0013400 Salix brachista HOM05D004799 ORTHO05D005500 1.6e-51 206.8 209 56.9
Cc02_g22290 Coffea canephora HOM05D004799 ORTHO05D005500 2.8e-51 206.1 214 59.3
Sabra01G0161300 Salix brachista HOM05D004799 ORTHO05D005500 4.8e-51 205.3 237 54.9
FAN18G4597 Fragaria x ananassa HOM05D004799 ORTHO05D005500 1.1e-50 204.1 221 58.4
RcHm_v2.0_Chr7g0224271 Rosa chinensis HOM05D004799 ORTHO05D005500 1.4e-50 203.8 212 60.8
Phvul.002G251000 Phaseolus vulgaris HOM05D004799 ORTHO05D005500 4.1e-50 202.2 216 58.3
Oeu012743.2 Olea europaea HOM05D004799 ORTHO05D005500 5.9e-49 198.4 224 56.2
MELO3C018586.2 Cucumis melo HOM05D004799 ORTHO05D005500 7.7e-49 198.0 213 56.3
ClCG09G016220 Citrullus lanatus HOM05D004799 ORTHO05D005500 1.3e-48 197.2 214 58.4
CAN.G1352.25 Capsicum annuum HOM05D004799 ORTHO05D005500 3.8e-48 195.7 224 55.8
SGA_v2.0_scaffold110G31288 Striga asiatica HOM05D004799 ORTHO05D005500 5.0e-48 195.3 227 53.3
CsaV3_7G007080 Cucumis sativus L. HOM05D004799 ORTHO05D005500 8.5e-48 194.5 213 56.3
Potri.003G021500 Populus trichocarpa HOM05D004799 ORTHO05D005500 1.1e-47 194.1 214 54.2
Atru.chr6.1081 Acer truncatum HOM05D004799 ORTHO05D005500 2.5e-47 193.0 198 59.1
CsaV3_5G024750 Cucumis sativus L. HOM05D004799 ORTHO05D005500 2.5e-47 193.0 213 56.8
DCAR_005625 Daucus carota HOM05D004799 ORTHO05D005500 4.2e-47 192.2 206 58.3
Eucgr.I02711 Eucalyptus grandis HOM05D004799 ORTHO05D005500 4.2e-47 192.2 226 54.9
Carub.0001s1103 Capsella rubella HOM05D004799 ORTHO05D005500 1.2e-46 190.7 227 55.5
TWI59G1038 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 1.2e-46 190.7 210 56.7
CANSAT11G1940 Cannabis sativa HOM05D004799 ORTHO05D005500 2.1e-46 189.9 228 53.9
Lsat_1_v5_gn_9_116381 Lactuca sativa HOM05D004799 ORTHO05D005500 7.9e-46 188.0 208 59.6
Nitab4.5_0010140g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 7.9e-46 188.0 224 54.0
Oeu008877.2 Olea europaea HOM05D004799 ORTHO05D005500 1.0e-45 187.6 263 49.4
Thecc.02G041200 Theobroma cacao HOM05D004799 ORTHO05D005500 1.0e-45 187.6 214 57.0
Aa31LG1G3310 Aethionema arabicum HOM05D004799 ORTHO05D005500 1.4e-45 187.2 230 54.3
Aqoxy6G00151 Aquilegia oxysepala HOM05D004799 ORTHO05D005500 1.8e-45 186.8 223 56.1
Glyma.05G170200 Glycine max HOM05D004799 ORTHO05D005500 3.0e-45 186.0 225 55.6
Sc14g0006850 Simmondsia chinensis HOM05D004799 ORTHO05D005500 3.0e-45 186.0 215 53.0
vmacro01776 Vaccinium macrocarpon HOM05D004799 ORTHO05D005500 3.0e-45 186.0 249 50.2
HanXRQChr03g0066881 Helianthus annuus HOM05D004799 ORTHO05D005500 3.9e-45 185.7 206 58.7
Sp1g10030 Schrenkiella parvula HOM05D004799 ORTHO05D005500 5.1e-45 185.3 220 53.6
Dinv24262 Davidia involucrata HOM05D004799 ORTHO05D005500 1.1e-44 184.1 212 54.2
AUR62018552 Chenopodium quinoa HOM05D004799 ORTHO05D005500 2.6e-44 183.0 212 51.4
HPP92_019221 Vanilla planifolia HOM05D004799 ORTHO05D005500 7.4e-44 181.4 213 57.7
A08p33480 Brassica napus HOM05D004799 ORTHO05D005500 4.8e-43 178.7 217 56.2
AUR62020867 Chenopodium quinoa HOM05D004799 ORTHO05D005500 1.4e-42 177.2 222 48.6
Hund19012 Selenicereus undatus HOM05D004799 ORTHO05D005500 1.4e-42 177.2 216 52.3
Sed0004816 Sechium edule HOM05D004799 ORTHO05D005500 1.8e-42 176.8 231 52.4
BraA08t35264Z Brassica rapa HOM05D004799 ORTHO05D005500 2.4e-42 176.4 213 54.0
AL1G22490 Arabidopsis lyrata HOM05D004799 ORTHO05D005500 5.3e-42 175.3 204 55.4
BcaB03g13259 Brassica carinata HOM05D004799 ORTHO05D005500 5.3e-42 175.3 222 54.1
Ah.04g149450 Amaranthus hybridus HOM05D004799 ORTHO05D005500 9.1e-42 174.5 226 50.0
ATR0684G092 Amborella trichopoda HOM05D004799 ORTHO05D005500 1.5e-41 173.7 227 50.2
Actinidia00218 Actinidia chinensis HOM05D004799 ORTHO05D005500 3.4e-41 172.6 204 54.9
FAN08G0327 Fragaria x ananassa HOM05D004799 ORTHO05D005500 5.9e-41 171.8 212 53.3
EL10Ac3g07450 Beta vulgaris HOM05D004799 ORTHO05D005500 1.7e-40 170.2 214 50.0
Os03g0262100 Oryza sativa ssp. japonica HOM05D004799 ORTHO05D005500 2.2e-40 169.9 202 53.0
C08p14470 Brassica napus HOM05D004799 ORTHO05D005500 2.9e-40 169.5 213 54.0
CARHR011640 Cardamine hirsuta HOM05D004799 ORTHO05D005500 1.4e-39 167.2 220 53.6
BcaC07g38663 Brassica carinata HOM05D004799 ORTHO05D005500 1.9e-39 166.8 213 53.5
BolC8t49096H Brassica oleracea HOM05D004799 ORTHO05D005500 1.9e-39 166.8 213 53.5
Nitab4.5_0005539g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 1.9e-39 166.8 224 50.0
TWI23G0644 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 1.9e-39 166.8 213 51.2
unitig_26.g9556 Utricularia gibba HOM05D004799 ORTHO05D005500 4.2e-39 165.6 224 48.7
AT1G11400 Arabidopsis thaliana HOM05D004799 ORTHO05D005500 5.5e-39 165.2 204 53.9
Zm00001eb011470 Zea mays HOM05D004799 ORTHO05D005500 1.6e-38 163.7 219 52.1
Lsat_1_v5_gn_7_77960 Lactuca sativa HOM05D004799 ORTHO05D005500 2.1e-38 163.3 203 53.2
Rhsim11G0131600 Rhododendron simsii HOM05D004799 ORTHO05D005500 2.1e-38 163.3 326 38.7
Actinidia39055 Actinidia chinensis HOM05D004799 ORTHO05D005500 3.3e-36 156.0 185 54.6
COL.COLO4_17895 Corchorus olitorius HOM05D004799 ORTHO05D005500 5.7e-36 155.2 205 52.2
A06p08020 Brassica napus HOM05D004799 ORTHO05D005500 1.7e-35 153.7 221 49.3
BraA06t24001Z Brassica rapa HOM05D004799 ORTHO05D005500 1.7e-35 153.7 221 49.3
PSO528G0257 Papaver somniferum HOM05D004799 ORTHO05D005500 1.7e-35 153.7 227 48.0
CSS0024882 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 2.2e-35 153.3 163 58.3
CSS0037217 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 2.2e-35 153.3 163 58.3
BcaC05g25015 Brassica carinata HOM05D004799 ORTHO05D005500 9.1e-34 147.9 223 48.9
C05p09620 Brassica napus HOM05D004799 ORTHO05D005500 9.1e-34 147.9 223 48.9
BolC5t29704H Brassica oleracea HOM05D004799 ORTHO05D005500 9.1e-34 147.9 223 48.9
Nn5g28066 Nelumbo nucifera HOM05D004799 ORTHO05D005500 9.1e-34 147.9 168 55.4
CDE02G4357 Ceratophyllum demersum HOM05D004799 ORTHO05D005500 1.6e-33 147.1 225 45.8
SalBow6G1776 Salvia bowleyana HOM05D004799 ORTHO05D005500 7.7e-33 144.8 216 45.8
SalBow6G5744 Salvia bowleyana HOM05D004799 ORTHO05D005500 7.7e-33 144.8 216 45.8
Thhalv10008698m.g Eutrema salsugineum HOM05D004799 ORTHO05D005500 1.0e-32 144.4 221 46.2
Nn1g08619 Nelumbo nucifera HOM05D004799 ORTHO05D005500 2.9e-32 142.9 170 54.7
Prupe.1G562800 Prunus persica HOM05D004799 ORTHO05D005500 1.6e-30 137.1 167 56.3
ECA240G2283 Erigeron canadensis HOM05D004799 ORTHO05D005500 3.0e-29 132.9 198 45.5
MBI03_g11149_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 4.0e-29 132.5 304 38.2
PSO170G0171 Papaver somniferum HOM05D004799 ORTHO05D005500 6.7e-29 131.7 227 43.6
MSTRG.16532 Avicennia marina HOM05D004799 ORTHO05D005500 2.6e-28 129.8 152 53.9
Mapoly0065s0027 Marchantia polymorpha HOM05D004799 ORTHO05D005500 1.7e-27 127.1 207 45.9
Glyma.14G170300 Glycine max HOM05D004799 ORTHO05D005500 6.3e-27 125.2 193 46.6
HPP92_009361 Vanilla planifolia HOM05D004799 ORTHO05D005500 1.8e-26 123.6 203 44.3
SEGI_10500 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 1.3e-24 117.5 88 70.5
Atru.chr6.1045 Acer truncatum HOM05D004799 ORTHO05D005500 1.4e-21 107.5 127 50.4
Zm00001eb398170 Zea mays HOM05D004799 ORTHO05D005500 2.2e-19 100.1 158 49.4
Lj9C308T7 Lonicera japonica HOM05D004799 ORTHO05D005500 4.1e-18 95.9 144 51.4
CBR_g22015 Chara braunii HOM05D004799 ORTHO05D005500 3.5e-17 92.8 237 33.3
Ah.13g077920 Amaranthus hybridus HOM05D004799 ORTHO05D005500 4.2e-15 85.9 197 36.0
MBI03_g11127_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 5.5e-15 85.5 121 52.1
AagrBONN_evm.TU.Sc2ySwM_344.2060 Anthoceros agrestis HOM05D004799 ORTHO05D005500 4.7e-14 82.4 74 62.2
arahy.Tifrunner.gnm1.ann1.DUW5WJ Arachis hypogaea HOM05D004799 ORTHO05D005500 1.8e-13 80.5 106 52.8
GSVIVG01013911001 Vitis vinifera HOM05D004799 ORTHO05D005500 2.6e-12 76.6 79 54.4
BcaB03g13258 Brassica carinata HOM05D004799 ORTHO05D005500 9.2e-10 68.2 91 49.5
A09p63310 Brassica napus HOM05D004799 ORTHO05D005500 9.2e-10 68.2 59 61.0
BraA09t41682Z Brassica rapa HOM05D004799 ORTHO05D005500 9.2e-10 68.2 59 61.0
CSS0012117 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 2.0e-09 67.0 45 77.8
CSS0018254 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 4.5e-09 65.9 45 77.8
Pp3c4_27250 Physcomitrium patens HOM05D004799 ORTHO05D005500 1.7e-08 63.9 143 39.9
SMO367G0479 Selaginella moellendorffii HOM05D004799 ORTHO05D005500 2.5e-07 60.1 40 75.0
SEGI_00858 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 4.3e-07 59.3 127 37.0
arahy.Tifrunner.gnm1.ann1.T74HR0 Arachis hypogaea HOM05D004799 ORTHO05D005500 9.5e-07 58.2 40 77.5


User provided reference genes

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