Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g108290 Medicago truncatula HOM05D004585 ORTHO05D005640 9.0e-119 430.3 214 100.0
TPR.G4853 Trifolium pratense HOM05D004585 ORTHO05D005640 3.1e-103 378.6 214 89.7
Psat6g221600 Pisum sativum HOM05D004585 ORTHO05D005640 1.5e-102 376.3 214 89.7
Ca_04982_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 2.2e-101 372.5 214 87.9
Ca_11096_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 2.2e-101 372.5 214 87.9
Phvul.005G089300 Phaseolus vulgaris HOM05D004585 ORTHO05D005640 1.1e-92 343.6 214 79.9
Glyma.02G173000 Glycine max HOM05D004585 ORTHO05D005640 1.2e-91 340.1 216 78.7
Glyma.09G111400 Glycine max HOM05D004585 ORTHO05D005640 7.9e-91 337.4 218 77.5
Lalb_Chr14g0365991 Lupinus albus HOM05D004585 ORTHO05D005640 2.5e-89 332.4 215 76.7
Lj6g0005217 Lotus japonicus HOM05D004585 ORTHO05D005640 7.4e-89 330.9 213 77.9
VMungo1080G1669 Vigna mungo HOM05D004585 ORTHO05D005640 9.7e-89 330.5 214 76.6
Lalb_Chr22g0354511 Lupinus albus HOM05D004585 ORTHO05D005640 3.7e-88 328.6 215 75.8
arahy.Tifrunner.gnm1.ann1.48LUDE Arachis hypogaea HOM05D004585 ORTHO05D005640 1.2e-86 323.6 220 71.8
arahy.Tifrunner.gnm1.ann1.CB8VHN Arachis hypogaea HOM05D004585 ORTHO05D005640 5.9e-86 321.2 220 71.4
Eucgr.G02711 Eucalyptus grandis HOM05D004585 ORTHO05D005640 7.7e-86 320.9 217 71.9
Cfa011225 Carpinus fangiana HOM05D004585 ORTHO05D005640 2.2e-85 319.3 215 71.6
Sed0016970 Sechium edule HOM05D004585 ORTHO05D005640 2.2e-85 319.3 213 71.8
Potri.010G234800 Populus trichocarpa HOM05D004585 ORTHO05D005640 5.0e-85 318.2 216 71.3
Sed0007729 Sechium edule HOM05D004585 ORTHO05D005640 5.0e-85 318.2 213 69.5
Manes.05G202500 Manihot esculenta HOM05D004585 ORTHO05D005640 6.5e-85 317.8 213 70.9
Haze_02611 Corylus avellana HOM05D004585 ORTHO05D005640 1.1e-84 317.0 215 71.2
Gorai.013G013300 Gossypium raimondii HOM05D004585 ORTHO05D005640 2.5e-84 315.8 214 72.0
Sabra10G0182000 Salix brachista HOM05D004585 ORTHO05D005640 2.5e-84 315.8 218 71.1
Cfa013557 Carpinus fangiana HOM05D004585 ORTHO05D005640 7.2e-84 314.3 215 70.7
ClCG08G008100 Citrullus lanatus HOM05D004585 ORTHO05D005640 2.1e-83 312.8 213 68.5
MELO3C019883.2 Cucumis melo HOM05D004585 ORTHO05D005640 2.1e-83 312.8 213 70.0
Gohir.D13G012100 Gossypium hirsutum HOM05D004585 ORTHO05D005640 2.1e-83 312.8 214 71.5
Peaxi162Scf00150g00411 Petunia axillaris HOM05D004585 ORTHO05D005640 2.1e-83 312.8 214 72.0
THA.LOC104816458 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 2.7e-83 312.4 220 69.1
CiPaw.01G204400 Carya illinoinensis HOM05D004585 ORTHO05D005640 3.6e-83 312.0 214 72.0
TWI38G0710 Tripterygium wilfordii HOM05D004585 ORTHO05D005640 3.6e-83 312.0 213 70.4
Gohir.A13G011400 Gossypium hirsutum HOM05D004585 ORTHO05D005640 6.1e-83 311.2 214 70.6
Hma1.2p1_0567F.1_g180100 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 1.0e-82 310.5 215 71.2
Dinv20840 Davidia involucrata HOM05D004585 ORTHO05D005640 1.8e-82 309.7 211 73.0
PSO675G5749 Papaver somniferum HOM05D004585 ORTHO05D005640 1.8e-82 309.7 224 70.5
Thecc.10G109700 Theobroma cacao HOM05D004585 ORTHO05D005640 1.8e-82 309.7 214 71.0
Thecc.K0008500 Theobroma cacao HOM05D004585 ORTHO05D005640 1.8e-82 309.7 214 71.0
CsaV3_6G004080 Cucumis sativus L. HOM05D004585 ORTHO05D005640 3.0e-82 308.9 213 68.5
PSO717G0039 Papaver somniferum HOM05D004585 ORTHO05D005640 6.7e-82 307.8 226 69.9
PGR142G4346 Punica granatum HOM05D004585 ORTHO05D005640 8.8e-82 307.4 216 69.9
Prupe.1G580700 Prunus persica HOM05D004585 ORTHO05D005640 1.1e-81 307.0 216 71.3
Nitab4.5_0000442g0080 Nicotiana tabacum HOM05D004585 ORTHO05D005640 1.5e-81 306.6 213 70.4
Actinidia18578 Actinidia chinensis HOM05D004585 ORTHO05D005640 2.0e-81 306.2 216 69.4
Medtr4g127330 Medicago truncatula HOM05D004585 ORTHO05D005640 5.7e-81 304.7 183 86.3
PSO173G0033 Papaver somniferum HOM05D004585 ORTHO05D005640 5.7e-81 304.7 226 68.6
Sopen11g026360 Solanum pennellii HOM05D004585 ORTHO05D005640 5.7e-81 304.7 217 70.0
ECA238G4124 Erigeron canadensis HOM05D004585 ORTHO05D005640 1.3e-80 303.5 214 70.6
THA.LOC104823192 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 1.3e-80 303.5 221 67.4
CANSAT56G4487 Cannabis sativa HOM05D004585 ORTHO05D005640 1.7e-80 303.1 212 70.8
Duzib128G1105 Durio zibethinus HOM05D004585 ORTHO05D005640 1.7e-80 303.1 219 68.5
Cc02_g10240 Coffea canephora HOM05D004585 ORTHO05D005640 2.8e-80 302.4 217 69.1
Sopen06g031130 Solanum pennellii HOM05D004585 ORTHO05D005640 3.7e-80 302.0 215 68.8
Rhsim03G0106100 Rhododendron simsii HOM05D004585 ORTHO05D005640 4.8e-80 301.6 215 69.3
vmacro21510 Vaccinium macrocarpon HOM05D004585 ORTHO05D005640 4.8e-80 301.6 214 69.2
Oeu027977.1 Olea europaea HOM05D004585 ORTHO05D005640 6.3e-80 301.2 212 68.4
PGSC0003DMG400000462 Solanum tuberosum HOM05D004585 ORTHO05D005640 8.2e-80 300.8 217 68.2
TAR633G2635 Trochodendron aralioides HOM05D004585 ORTHO05D005640 4.1e-79 298.5 214 67.3
HanXRQChr10g0319081 Helianthus annuus HOM05D004585 ORTHO05D005640 1.2e-78 297.0 192 75.0
PGSC0003DMG400007128 Solanum tuberosum HOM05D004585 ORTHO05D005640 2.0e-78 296.2 215 67.9
CSS0035600 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D000484 5.9e-78 294.7 213 67.1
Hma1.2p1_0026F.1_g016750 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 7.7e-78 294.3 215 69.3
GSVIVG01021851001 Vitis vinifera HOM05D004585 ORTHO05D005640 7.7e-78 294.3 214 69.2
Aa31LG3G3420 Aethionema arabicum HOM05D004585 ORTHO05D005640 1.0e-77 293.9 218 65.1
Thhalv10014607m.g Eutrema salsugineum HOM05D004585 ORTHO05D005640 1.0e-77 293.9 225 64.9
Actinidia06707 Actinidia chinensis HOM05D004585 ORTHO05D005640 1.7e-77 293.1 216 67.1
HanXRQChr14g0456901 Helianthus annuus HOM05D004585 ORTHO05D005640 2.2e-77 292.7 206 68.9
SGA_v2.0_scaffold154G37190 Striga asiatica HOM05D004585 ORTHO05D005640 3.8e-77 292.0 211 66.4
SGA_v2.0_scaffold113G31721 Striga asiatica HOM05D004585 ORTHO05D005640 1.1e-76 290.4 212 65.6
QL04p041242 Quercus lobata HOM05D004585 ORTHO05D005640 2.5e-76 289.3 214 65.9
SGA_v2.0_scaffold10G05319 Striga asiatica HOM05D004585 ORTHO05D005640 2.5e-76 289.3 212 67.0
RcHm_v2.0_Chr4g0433501 Rosa chinensis HOM05D004585 ORTHO05D005640 4.2e-76 288.5 214 68.7
Lj3A931T47 Lonicera japonica HOM05D004585 ORTHO05D005640 5.5e-76 288.1 199 71.4
Atru.chr12.969 Acer truncatum HOM05D004585 ORTHO05D005640 7.2e-76 287.7 215 66.0
MSTRG.412 Avicennia marina HOM05D004585 ORTHO05D005640 1.2e-75 287.0 212 65.6
Lsat_1_v5_gn_2_86220 Lactuca sativa HOM05D004585 ORTHO05D005640 1.6e-75 286.6 215 66.0
Ciclev10013752m.g Citrus clementina HOM05D004585 ORTHO05D005640 2.1e-75 286.2 214 67.8
Sp6g38180 Schrenkiella parvula HOM05D004585 ORTHO05D005640 2.1e-75 286.2 225 62.7
TAR633G1318 Trochodendron aralioides HOM05D004585 ORTHO05D005640 2.1e-75 286.2 216 64.4
C02p02000 Brassica napus HOM05D004585 ORTHO05D005640 2.7e-75 285.8 226 62.4
A10p31500 Brassica napus HOM05D004585 ORTHO05D005640 3.6e-75 285.4 226 62.4
BraA10t45196Z Brassica rapa HOM05D004585 ORTHO05D005640 3.6e-75 285.4 226 62.4
MD08G1243300 Malus domestica HOM05D004585 ORTHO05D005640 3.6e-75 285.4 184 72.8
BcaC06g32168 Brassica carinata HOM05D004585 ORTHO05D005640 4.7e-75 285.0 226 62.4
C09p72190 Brassica napus HOM05D004585 ORTHO05D005640 4.7e-75 285.0 226 62.4
BolC9t59963H Brassica oleracea HOM05D004585 ORTHO05D005640 4.7e-75 285.0 226 62.4
Solyc06g074720.4 Solanum lycopersicum HOM05D004585 ORTHO05D005640 6.1e-75 284.6 217 66.4
BcaC03g12939 Brassica carinata HOM05D004585 ORTHO05D005640 7.9e-75 284.3 226 61.9
BraA02t04819Z Brassica rapa HOM05D004585 ORTHO05D005640 7.9e-75 284.3 222 63.1
CARHR208690 Cardamine hirsuta HOM05D004585 ORTHO05D005640 1.0e-74 283.9 225 63.1
Nitab4.5_0003470g0110 Nicotiana tabacum HOM05D004585 ORTHO05D005640 5.1e-74 281.6 202 70.8
AL6G14230 Arabidopsis lyrata HOM05D004585 ORTHO05D005640 1.1e-73 280.4 224 62.9
Cpa.g.sc128.48 Carica papaya HOM05D004585 ORTHO05D005640 3.3e-73 278.9 198 67.7
PSO210G0756 Papaver somniferum HOM05D004585 ORTHO05D005640 3.3e-73 278.9 205 70.7
Carub.0006s0352 Capsella rubella HOM05D004585 ORTHO05D005640 5.7e-73 278.1 223 61.9
Dinv30656 Davidia involucrata HOM05D004585 ORTHO05D005640 7.4e-73 277.7 214 66.4
Sc09g0005570 Simmondsia chinensis HOM05D004585 ORTHO05D005640 7.4e-73 277.7 207 64.7
Nn3g20167 Nelumbo nucifera HOM05D004585 ORTHO05D005640 2.2e-72 276.2 217 63.6
COL.COLO4_33895 Corchorus olitorius HOM05D004585 ORTHO05D005640 2.8e-72 275.8 183 71.0
Ah.16g102420 Amaranthus hybridus HOM05D004585 ORTHO05D005640 1.4e-71 273.5 193 68.4
Atru.chr10.1244 Acer truncatum HOM05D004585 ORTHO05D005640 4.1e-71 271.9 182 71.4
Ah.03g136890 Amaranthus hybridus HOM05D004585 ORTHO05D005640 4.1e-71 271.9 192 67.2
FAN26G1691 Fragaria x ananassa HOM05D004585 ORTHO05D005640 7.0e-71 271.2 223 64.6
FvH4_5g27351 Fragaria vesca HOM05D004585 ORTHO05D005640 9.1e-71 270.8 223 63.2
Hund06922 Selenicereus undatus HOM05D004585 ORTHO05D005640 3.5e-70 268.9 184 69.0
AT5G04600 Arabidopsis thaliana HOM05D004585 ORTHO05D005640 4.5e-70 268.5 224 60.3
Migut.F01706 Erythranthe guttata HOM05D004585 ORTHO05D005640 4.5e-70 268.5 217 61.8
SalBow6G2458 Salvia bowleyana HOM05D004585 ORTHO05D005640 4.5e-70 268.5 249 57.8
Hund13887 Selenicereus undatus HOM05D004585 ORTHO05D005640 1.0e-69 267.3 186 67.7
ATR0068G115 Amborella trichopoda HOM05D004585 ORTHO05D005640 3.8e-69 265.4 214 59.3
CDE04G0123 Ceratophyllum demersum HOM05D004585 ORTHO05D005640 3.8e-69 265.4 214 60.3
CDE02G2408 Ceratophyllum demersum HOM05D000251 ORTHO05D002506 2.5e-68 262.7 214 60.7
EL10Ac2g03709 Beta vulgaris HOM05D004585 ORTHO05D005640 2.7e-67 259.2 191 65.4
Haze_22178 Corylus avellana HOM05D004585 ORTHO05D005640 3.6e-67 258.8 218 63.3
Os08g0412200 Oryza sativa ssp. japonica HOM05D004585 ORTHO05D005640 4.7e-67 258.5 217 59.0
AUR62003699 Chenopodium quinoa HOM05D004585 ORTHO05D005640 5.2e-66 255.0 199 62.3
FAN13G1680 Fragaria x ananassa HOM05D005925 ORTHO05D007270 1.1e-65 253.8 256 55.1
FAN18G1621 Fragaria x ananassa HOM05D005925 ORTHO05D007270 1.1e-65 253.8 256 55.1
EL10Ac4g08678 Beta vulgaris HOM05D004585 ORTHO05D005640 1.1e-63 247.3 177 67.2
EL10Ac4g08675 Beta vulgaris HOM05D004585 ORTHO05D005640 9.1e-63 244.2 183 65.0
CSS0012030 Camellia sinensis var. sinensis HOM05D004585 ORTHO05D005640 2.2e-61 239.6 219 58.0
TPR.G31410 Trifolium pratense HOM05D004585 ORTHO05D005640 9.4e-60 234.2 137 87.6
HPP92_008213 Vanilla planifolia HOM05D004585 ORTHO05D005640 9.4e-60 234.2 214 53.7
COL.COLO4_27310 Corchorus olitorius HOM05D004585 ORTHO05D005640 1.6e-59 233.4 144 75.0
Ciclev10033004m.g Citrus clementina HOM05D004585 ORTHO05D005640 6.1e-59 231.5 145 71.7
DCAR_012470 Daucus carota HOM05D004585 ORTHO05D005640 1.9e-52 209.9 146 69.9
Zm00001eb178930 Zea mays HOM05D004585 ORTHO05D005640 3.2e-52 209.1 192 56.2
Oeu046197.1 Olea europaea HOM05D004585 ORTHO05D005640 1.0e-50 204.1 142 67.6
BolC2t06157H Brassica oleracea HOM05D004585 ORTHO05D005640 4.4e-49 198.7 142 64.8
Pp3c8_3240 Physcomitrium patens HOM05D004585 ORTHO05D005640 1.1e-47 194.1 212 48.6
Pp3c3_32540 Physcomitrium patens HOM05D004585 ORTHO05D005640 1.4e-47 193.7 197 50.3
Lj6g0027575 Lotus japonicus HOM05D004585 ORTHO05D005640 1.8e-47 193.4 123 82.1
Lj9A82T44 Lonicera japonica HOM05D004585 ORTHO05D005640 5.4e-47 191.8 151 65.6
Mapoly0059s0023 Marchantia polymorpha HOM05D004585 ORTHO05D005640 6.6e-45 184.9 162 54.9
AagrBONN_evm.TU.Sc2ySwM_228.827 Anthoceros agrestis HOM05D004585 ORTHO05D005640 1.6e-43 180.3 142 61.3
DCAR_001331 Daucus carota HOM05D004585 ORTHO05D005640 1.5e-41 173.7 146 61.6
AUR62018007 Chenopodium quinoa HOM05D004585 ORTHO05D005640 2.2e-40 169.9 126 65.9
SMO117G0347 Selaginella moellendorffii HOM05D004585 ORTHO05D005640 2.2e-40 169.9 198 46.0
MCO05G308 Micromonas commoda HOM05D004585 ORTHO05D005640 4.3e-36 155.6 143 49.7
Aqoxy1G00240 Aquilegia oxysepala HOM05D004585 ORTHO05D005640 1.2e-35 154.1 107 67.3
CBR_g11154 Chara braunii HOM05D004585 ORTHO05D005640 1.0e-34 151.0 198 41.9
Cre08.g368500 Chlamydomonas reinhardtii HOM05D004585 ORTHO05D005640 2.3e-34 149.8 179 42.5
TPR.G32073 Trifolium pratense HOM05D004585 ORTHO05D005640 1.4e-31 140.6 76 86.8
PRCOL_00003387 Prasinoderma coloniale HOM05D004585 ORTHO05D005640 2.4e-31 139.8 141 48.2
unitig_26.g9455 Utricularia gibba HOM05D004585 ORTHO05D005640 7.8e-30 134.8 212 41.0
Cfa021710 Carpinus fangiana HOM05D004585 ORTHO05D005640 1.7e-29 133.7 181 42.0
BcaC06g32170 Brassica carinata HOM05D004585 ORTHO05D005640 1.9e-23 113.6 75 66.7
Oeu060262.1 Olea europaea HOM05D004585 ORTHO05D005640 5.1e-21 105.5 89 57.3
Haze_26093 Corylus avellana HOM05D004585 ORTHO05D005640 5.6e-20 102.1 145 39.3
MD15G1436900 Malus domestica HOM05D004585 ORTHO05D005640 1.8e-18 97.1 73 64.4
COL.COLO4_14104 Corchorus olitorius HOM05D004585 ORTHO05D005736 6.4e-16 88.6 75 56.0
Glyma.09G232800 Glycine max HOM05D004585 ORTHO05D005640 7.1e-15 85.1 86 60.5
Oeu053518.1 Olea europaea HOM05D004585 ORTHO05D005640 9.2e-15 84.7 49 75.5
COL.COLO4_17533 Corchorus olitorius HOM05D001240 ORTHO05D002450 3.5e-14 82.8 136 36.0
EL10Ac7g17659 Beta vulgaris HOM05D004585 ORTHO05D005640 4.6e-14 82.4 69 53.6
BcaB01g05909 Brassica carinata HOM05D004585 ORTHO05D005640 1.7e-13 80.5 54 64.8
MD15G1437000 Malus domestica HOM05D004585 ORTHO05D005640 2.3e-13 80.1 49 71.4
MD15G1437100 Malus domestica HOM05D004585 ORTHO05D005640 5.6e-12 75.5 43 81.4
SalBow3G2087 Salvia bowleyana HOM05D004585 ORTHO05D005640 2.0e-09 67.0 41 75.6
Psat1g082200 Pisum sativum HOM05D004585 ORTHO05D005640 3.4e-09 66.2 46 67.4
EL10Ac2g02998 Beta vulgaris HOM05D000461 ORTHO05D005640 3.8e-08 62.8 55 56.4
DCAR_009360 Daucus carota HOM05D003145 ORTHO05D003586 9.3e-07 58.2 72 36.1
CANSAT21G2006 Cannabis sativa HOM05D000285 ORTHO05D000241 1.6e-06 57.4 63 41.3
CANSAT21G0794 Cannabis sativa HOM05D000285 ORTHO05D000241 2.1e-06 57.0 63 41.3
CANSAT21G1045 Cannabis sativa HOM05D000285 ORTHO05D000241 2.1e-06 57.0 63 41.3
BcaC09g47949 Brassica carinata HOM05D000285 ORTHO05D000241 2.7e-06 56.6 85 32.9
Os07g0124600 Oryza sativa ssp. japonica HOM05D000285 ORTHO05D000241 2.7e-06 56.6 62 40.3
ECA234G0091 Erigeron canadensis HOM05D000561 ORTHO05D000514 3.5e-06 56.2 108 35.2
PSO478G2622 Papaver somniferum HOM05D004585 ORTHO05D037280 3.5e-06 56.2 33 78.8
CANSAT21G0705 Cannabis sativa HOM05D000285 ORTHO05D000241 4.6e-06 55.8 63 39.7
Prupe.6G216700 Prunus persica HOM05D000285 ORTHO05D000241 4.6e-06 55.8 87 34.5
vmacro07224 Vaccinium macrocarpon HOM05D004585 ORTHO05D037280 4.6e-06 55.8 44 59.1
CANSAT21G0598 Cannabis sativa HOM05D000285 ORTHO05D000241 6.0e-06 55.5 63 39.7
Carub.0003s0739 Capsella rubella HOM05D000285 ORTHO05D000241 6.0e-06 55.5 69 36.2
Psat2g004080 Pisum sativum HOM05D000285 ORTHO05D000241 6.0e-06 55.5 69 36.2
CBR_g23080 Chara braunii HOM05D005565 ORTHO05D006950 7.8e-06 55.1 72 34.7
Medtr5g097580 Medicago truncatula HOM05D000285 ORTHO05D000241 7.8e-06 55.1 69 36.2
QL01p012181 Quercus lobata HOM05D001873 ORTHO05D001976 7.8e-06 55.1 77 32.5
Rhsim08G0090200 Rhododendron simsii HOM05D000285 ORTHO05D000241 7.8e-06 55.1 155 29.0


User provided reference genes

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