Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 1.5e-273 945.7 522 100.0
TPR.G14322 Trifolium pratense HOM05D004189 ORTHO05D004092 2.4e-173 612.8 598 63.5
Ca_10770_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 6.8e-128 461.8 556 57.2
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 6.2e-113 412.1 536 53.7
Medtr1g100623 Medicago truncatula HOM05D004189 ORTHO05D004092 7.5e-103 378.6 838 38.4
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 4.6e-100 369.4 533 51.2
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 1.1e-90 338.2 762 39.5
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 3.3e-82 310.1 524 46.0
Psat6g199400 Pisum sativum HOM05D004189 ORTHO05D004092 7.6e-79 298.9 533 42.8
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 6.0e-76 289.3 530 45.5
TPR.G14317 Trifolium pratense HOM05D004189 ORTHO05D017062 4.8e-73 279.6 651 38.6
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 9.3e-61 238.8 680 33.7
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 1.3e-57 228.4 682 33.4
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 2.2e-46 191.0 627 32.9
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 1.1e-45 188.7 647 31.7
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 6.5e-38 162.9 582 33.3
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 5.5e-37 159.8 288 44.1
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 1.6e-36 158.3 554 33.9
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 8.8e-35 152.5 572 32.7
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 8.8e-35 152.5 582 33.5
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 7.0e-32 142.9 587 31.3
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 9.1e-32 142.5 557 32.7
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 1.5e-29 135.2 613 29.0
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 1.2e-28 132.1 593 31.7
Lalb_Chr21g0305031 Lupinus albus HOM05D004189 ORTHO05D004092 1.2e-28 132.1 174 52.3
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 3.6e-28 130.6 594 31.6
Phvul.004G117100 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 2.3e-27 127.9 295 38.0
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 4.0e-27 127.1 462 32.7
Medtr1g100607 Medicago truncatula HOM05D004189 ORTHO05D004092 8.8e-27 125.9 135 61.5
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 2.0e-26 124.8 214 43.5
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 2.6e-26 124.4 546 31.5
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 1.4e-24 118.6 379 34.6
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 1.8e-24 118.2 453 31.6
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 3.1e-24 117.5 564 30.1
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 7.0e-24 116.3 545 30.1
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 9.1e-24 115.9 558 30.8
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 1.2e-23 115.5 464 31.5
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 2.0e-23 114.8 597 30.0
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 1.0e-22 112.5 561 29.1
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.7e-22 111.7 622 29.1
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 2.9e-22 110.9 331 34.7
Medtr6g045273 Medicago truncatula HOM05D004189 ORTHO05D004092 3.8e-22 110.5 281 38.4
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 3.8e-22 110.5 631 30.7
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 1.5e-21 108.6 907 25.7
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 8.0e-20 102.8 407 31.9
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 8.0e-20 102.8 362 34.8
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 1.4e-19 102.1 383 34.2
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 1.4e-19 102.1 526 29.1
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 1.5e-18 98.6 377 34.7
TPR.G10748 Trifolium pratense HOM05D004189 ORTHO05D004092 1.5e-18 98.6 209 43.1
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 3.4e-18 97.4 279 36.6
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 4.4e-18 97.1 361 34.1
Cfa008320 Carpinus fangiana HOM05D004189 ORTHO05D004092 5.7e-18 96.7 519 28.9
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 7.5e-18 96.3 588 28.2
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 7.5e-18 96.3 380 33.2
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 9.8e-18 95.9 355 33.2
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 4.9e-17 93.6 511 30.9
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 6.3e-17 93.2 525 29.3
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 6.3e-17 93.2 656 27.9
arahy.Tifrunner.gnm1.ann1.UM41MD Arachis hypogaea HOM05D004189 ORTHO05D004092 8.3e-17 92.8 142 46.5
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 2.4e-16 91.3 643 28.6
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 2.4e-16 91.3 371 31.0
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 3.1e-16 90.9 641 26.7
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 4.1e-16 90.5 509 29.5
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 5.4e-16 90.1 585 26.3
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 5.4e-16 90.1 447 30.2
Psat6g041200 Pisum sativum HOM05D049253 ORTHO05D004092 9.1e-16 89.4 77 61.0
Psat0s1958g0360 Pisum sativum HOM05D049253 ORTHO05D004092 1.6e-15 88.6 77 59.7
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 2.7e-15 87.8 621 27.5
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 2.7e-15 87.8 178 39.9
CANSAT21G0752 Cannabis sativa HOM05D004189 ORTHO05D004092 1.3e-14 85.5 390 26.7
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.3e-14 85.5 383 29.0
CANSAT21G0725 Cannabis sativa HOM05D004189 ORTHO05D004092 2.3e-14 84.7 414 28.0
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 3.8e-14 84.0 634 28.1
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 5.0e-14 83.6 599 27.5
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 6.6e-14 83.2 634 26.2
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 1.1e-13 82.4 506 27.7
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 1.5e-13 82.0 505 27.7
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 2.5e-13 81.3 615 24.9
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 2.5e-13 81.3 597 27.1
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 3.3e-13 80.9 592 27.4
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 5.5e-13 80.1 554 26.7
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 9.5e-13 79.3 578 27.0
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 9.5e-13 79.3 578 27.0
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 9.5e-13 79.3 601 27.1
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.6e-12 78.6 388 28.9
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 2.8e-12 77.8 562 25.6
Glyma.16G183700 Glycine max HOM05D004189 ORTHO05D004092 3.6e-12 77.4 170 37.6
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 6.1e-12 76.6 562 26.9
Ca_25745_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 6.1e-12 76.6 161 42.9
Glyma.16G192732 Glycine max HOM05D004189 ORTHO05D004092 6.1e-12 76.6 170 37.6
Aa31LG3G8720 Aethionema arabicum HOM05D004189 ORTHO05D004092 8.0e-12 76.3 196 36.2
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 8.0e-12 76.3 568 27.1
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 1.0e-11 75.9 569 27.9
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 1.4e-11 75.5 476 27.5
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 2.3e-11 74.7 376 29.3
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 5.2e-11 73.6 570 25.3
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 8.9e-11 72.8 416 26.9
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 1.2e-10 72.4 324 29.3
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 2.0e-10 71.6 423 27.9
ECA233G5127 Erigeron canadensis HOM05D004189 ORTHO05D004092 2.0e-10 71.6 278 27.0
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 2.6e-10 71.2 572 28.3
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.6e-10 71.2 631 26.6
Glyma.16G192000 Glycine max HOM05D004189 ORTHO05D004092 3.4e-10 70.9 154 38.3
Glyma.16G192200 Glycine max HOM05D004189 ORTHO05D004092 3.4e-10 70.9 154 37.7
Nn1g01463 Nelumbo nucifera HOM05D004189 ORTHO05D004092 4.4e-10 70.5 456 27.6
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 7.5e-10 69.7 599 27.7
PSO782G0005 Papaver somniferum HOM05D004189 ORTHO05D004092 7.5e-10 69.7 613 28.5
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 9.8e-10 69.3 424 29.2
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 9.8e-10 69.3 212 34.4
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.7e-09 68.6 620 25.5
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 1.7e-09 68.6 570 23.5
Lj8A24G36 Lonicera japonica HOM05D004189 ORTHO05D004092 2.2e-09 68.2 356 27.5
Ah.07g207200 Amaranthus hybridus HOM05D032681 ORTHO05D004092 2.9e-09 67.8 179 35.8
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 2.9e-09 67.8 151 39.7
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 4.9e-09 67.0 171 36.3
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 6.3e-09 66.6 560 26.8
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 6.3e-09 66.6 272 33.1
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 1.1e-08 65.9 476 26.1
Nitab4.5_0003242g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 1.1e-08 65.9 170 34.1
Psat0s2227g0040 Pisum sativum HOM05D004189 ORTHO05D004092 1.4e-08 65.5 196 35.7
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 1.4e-08 65.5 401 26.9
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 4.1e-08 63.9 400 27.0
ClCG09G012920 Citrullus lanatus HOM05D004189 ORTHO05D004092 2.7e-07 61.2 203 32.0
CiPaw.03G106300 Carya illinoinensis HOM05D004189 ORTHO05D004092 5.9e-07 60.1 398 27.6
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 5.9e-07 60.1 400 26.8
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 7.8e-07 59.7 547 26.0
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 1.0e-06 59.3 484 24.8
Medtr5g052190 Medicago truncatula HOM05D023930 ORTHO05D018030 1.3e-06 58.9 54 61.1
PSO478G0985 Papaver somniferum HOM05D004189 ORTHO05D004092 2.9e-06 57.8 671 24.9
GSVIVG01028976001 Vitis vinifera HOM05D004189 ORTHO05D004092 2.9e-06 57.8 215 30.7
BcaB03g12476 Brassica carinata HOM05D002154 ORTHO05D002362 3.9e-06 57.4 67 50.7
A08p21090 Brassica napus HOM05D002154 ORTHO05D002362 3.9e-06 57.4 84 41.7
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 5.0e-06 57.0 546 27.1
GSVIVG01031399001 Vitis vinifera HOM05D006297 ORTHO05D007873 8.6e-06 56.2 104 38.5


User provided reference genes

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