Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g096890 Medicago truncatula HOM05D005561 ORTHO05D006834 3.1e-55 218.8 162 100.0
TPR.G28384 Trifolium pratense HOM05D005561 ORTHO05D006834 1.0e-18 97.4 102 58.8
Medtr3g032780 Medicago truncatula HOM05D005561 ORTHO05D006834 3.4e-17 92.4 95 51.6
Lalb_Chr23g0265661 Lupinus albus HOM05D005561 ORTHO05D006834 8.3e-16 87.8 98 49.0
TPR.G38189 Trifolium pratense HOM05D005561 ORTHO05D006834 8.3e-16 87.8 99 49.5
Duzib093G0247 Durio zibethinus HOM05D005561 ORTHO05D006834 1.4e-15 87.0 92 48.9
Phvul.009G012500 Phaseolus vulgaris HOM05D005561 ORTHO05D006834 1.8e-15 86.7 98 49.0
Lj1g0007073 Lotus japonicus HOM05D005561 ORTHO05D006834 2.4e-15 86.3 99 50.5
Thecc.08G062600 Theobroma cacao HOM05D005561 ORTHO05D006834 3.1e-15 85.9 97 45.4
Psat5g009720 Pisum sativum HOM05D005561 ORTHO05D006834 4.1e-15 85.5 100 46.0
Rhsim06G0005100 Rhododendron simsii HOM05D005561 ORTHO05D006834 4.1e-15 85.5 99 47.5
VMungo1309G3038 Vigna mungo HOM05D005561 ORTHO05D006834 4.1e-15 85.5 98 48.0
Eucgr.F01790 Eucalyptus grandis HOM05D005561 ORTHO05D006834 5.4e-15 85.1 99 46.5
Glyma.04G016300 Glycine max HOM05D005561 ORTHO05D006834 7.0e-15 84.7 100 47.0
THA.LOC104801947 Tarenaya hassleriana HOM05D005561 ORTHO05D006834 7.0e-15 84.7 100 45.0
arahy.Tifrunner.gnm1.ann1.NG9QQJ Arachis hypogaea HOM05D005561 ORTHO05D006834 9.1e-15 84.3 98 46.9
Glyma.06G016400 Glycine max HOM05D005561 ORTHO05D006834 9.1e-15 84.3 100 47.0
Medtr3g115870 Medicago truncatula HOM05D005561 ORTHO05D006834 9.1e-15 84.3 99 46.5
Duzib116G0146 Durio zibethinus HOM05D005561 ORTHO05D006834 1.6e-14 83.6 97 44.3
vmacro21786 Vaccinium macrocarpon HOM05D005561 ORTHO05D006834 1.6e-14 83.6 99 46.5
EL10Ac1g01911 Beta vulgaris HOM05D005561 ORTHO05D006834 2.0e-14 83.2 102 46.1
Cfa014114 Carpinus fangiana HOM05D005561 ORTHO05D006834 2.0e-14 83.2 99 46.5
Ca_15401_v3 Cicer arietinum L. HOM05D005561 ORTHO05D006834 2.0e-14 83.2 87 49.4
Haze_22832 Corylus avellana HOM05D005561 ORTHO05D006834 2.0e-14 83.2 99 46.5
Duzib041G0482 Durio zibethinus HOM05D005561 ORTHO05D006834 2.0e-14 83.2 92 45.7
PGR083G0762 Punica granatum HOM05D005561 ORTHO05D006834 2.0e-14 83.2 84 50.0
Lalb_Chr11g0061481 Lupinus albus HOM05D005561 ORTHO05D006834 2.7e-14 82.8 105 47.6
Cpa.g.sc26.163 Carica papaya HOM05D005561 ORTHO05D006834 3.5e-14 82.4 97 45.4
COL.COLO4_35541 Corchorus olitorius HOM05D005561 ORTHO05D006834 3.5e-14 82.4 97 43.3
Nn5g31005 Nelumbo nucifera HOM05D005561 ORTHO05D006834 3.5e-14 82.4 97 49.5
AL8G19230 Arabidopsis lyrata HOM05D005561 ORTHO05D006834 5.9e-14 81.6 95 47.4
CSS0019163 Camellia sinensis var. sinensis HOM05D005561 ORTHO05D006834 7.7e-14 81.3 100 46.0
CANSAT78G2155 Cannabis sativa HOM05D005561 ORTHO05D006834 1.0e-13 80.9 97 46.4
CiPaw.07G135900 Carya illinoinensis HOM05D005561 ORTHO05D006834 1.0e-13 80.9 99 44.4
AUR62035143 Chenopodium quinoa HOM05D005561 ORTHO05D006834 1.0e-13 80.9 97 48.5
AUR62042576 Chenopodium quinoa HOM05D005561 ORTHO05D006834 1.0e-13 80.9 97 48.5
Dinv31967 Davidia involucrata HOM05D005561 ORTHO05D006834 1.0e-13 80.9 97 47.4
AL8G19220 Arabidopsis lyrata HOM05D005561 ORTHO05D006834 1.3e-13 80.5 95 47.4
Ciclev10000678m.g Citrus clementina HOM05D005561 ORTHO05D006834 1.3e-13 80.5 98 45.9
Medtr3g032830 Medicago truncatula HOM05D005561 ORTHO05D006834 1.3e-13 80.5 67 58.2
Cc10_g00480 Coffea canephora HOM05D005561 ORTHO05D006834 2.2e-13 79.7 98 44.9
Manes.05G124800 Manihot esculenta HOM05D005561 ORTHO05D006834 2.2e-13 79.7 99 42.4
Gohir.A01G103500 Gossypium hirsutum HOM05D005561 ORTHO05D006834 5.0e-13 78.6 92 43.5
Lj4C7T6 Lonicera japonica HOM05D005561 ORTHO05D006834 5.0e-13 78.6 100 44.0
Potri.002G007700 Populus trichocarpa HOM05D005561 ORTHO05D006834 5.0e-13 78.6 92 43.5
Ah.11g041760 Amaranthus hybridus HOM05D005561 ORTHO05D006834 6.5e-13 78.2 102 43.1
Lsat_1_v5_gn_2_1901 Lactuca sativa HOM05D005561 ORTHO05D006834 6.5e-13 78.2 95 45.3
Potri.005G253500 Populus trichocarpa HOM05D005561 ORTHO05D006834 6.5e-13 78.2 92 43.5
Prupe.5G009000 Prunus persica HOM05D005561 ORTHO05D006834 6.5e-13 78.2 85 45.9
Sabra02G0006100 Salix brachista HOM05D005561 ORTHO05D006834 6.5e-13 78.2 93 43.0
Sabra05G0196600 Salix brachista HOM05D005561 ORTHO05D006834 6.5e-13 78.2 92 44.6
Actinidia17061 Actinidia chinensis HOM05D005561 ORTHO05D006834 8.5e-13 77.8 87 46.0
Gohir.D01G088800 Gossypium hirsutum HOM05D005561 ORTHO05D006834 8.5e-13 77.8 92 43.5
Gorai.002G114500 Gossypium raimondii HOM05D005561 ORTHO05D006834 8.5e-13 77.8 92 43.5
ECA232G0027 Erigeron canadensis HOM05D005561 ORTHO05D006834 1.1e-12 77.4 93 44.1
TWI56G0057 Tripterygium wilfordii HOM05D005561 ORTHO05D006834 1.1e-12 77.4 100 45.0
Solyc04g082580.3 Solanum lycopersicum HOM05D005561 ORTHO05D006834 1.9e-12 76.6 97 42.3
Sopen04g036210 Solanum pennellii HOM05D005561 ORTHO05D006834 1.9e-12 76.6 97 42.3
ClCG08G009280 Citrullus lanatus HOM05D005561 ORTHO05D006834 2.5e-12 76.3 99 45.5
DCAR_016786 Daucus carota HOM05D005561 ORTHO05D006834 2.5e-12 76.3 99 42.4
Nitab4.5_0001208g0070 Nicotiana tabacum HOM05D005561 ORTHO05D006834 2.5e-12 76.3 97 42.3
Peaxi162Scf00680g00110 Petunia axillaris HOM05D005561 ORTHO05D006834 2.5e-12 76.3 99 42.4
QL02p015136 Quercus lobata HOM05D005561 ORTHO05D006834 2.5e-12 76.3 99 43.4
PGSC0003DMG400009989 Solanum tuberosum HOM05D005561 ORTHO05D006834 2.5e-12 76.3 97 42.3
CsaV3_6G031410 Cucumis sativus L. HOM05D005561 ORTHO05D006834 3.2e-12 75.9 98 44.9
Sed0010562 Sechium edule HOM05D005561 ORTHO05D006834 3.2e-12 75.9 99 45.5
CSS0027936 Camellia sinensis var. sinensis HOM05D005561 ORTHO05D006834 4.2e-12 75.5 99 44.4
HanXRQChr06g0185211 Helianthus annuus HOM05D005561 ORTHO05D006834 4.2e-12 75.5 106 43.4
CAN.G311.134 Capsicum annuum HOM05D005561 ORTHO05D006834 5.5e-12 75.1 97 41.2
Thhalv10003171m.g Eutrema salsugineum HOM05D005561 ORTHO05D006834 5.5e-12 75.1 96 41.7
TWI36G1622 Tripterygium wilfordii HOM05D005561 ORTHO05D006834 5.5e-12 75.1 100 44.0
AT5G42350 Arabidopsis thaliana HOM05D005561 ORTHO05D006834 7.2e-12 74.7 95 42.1
MELO3C026526.2 Cucumis melo HOM05D005561 ORTHO05D006834 7.2e-12 74.7 99 44.4
HanXRQChr15g0492491 Helianthus annuus HOM05D005561 ORTHO05D006834 7.2e-12 74.7 93 44.1
MD06G1007100 Malus domestica HOM05D005561 ORTHO05D006834 7.2e-12 74.7 97 41.2
SalBow1G8439 Salvia bowleyana HOM05D005561 ORTHO05D006834 7.2e-12 74.7 85 45.9
SalBow7G4605 Salvia bowleyana HOM05D005561 ORTHO05D006834 7.2e-12 74.7 85 45.9
Sc02g0009190 Simmondsia chinensis HOM05D005561 ORTHO05D006834 7.2e-12 74.7 97 43.3
MD00G1113700 Malus domestica HOM05D005561 ORTHO05D006834 9.5e-12 74.3 85 45.9
Carub.0008s0680 Capsella rubella HOM05D005561 ORTHO05D006834 1.2e-11 73.9 94 43.6
FvH4_5g25640 Fragaria vesca HOM05D005561 ORTHO05D006834 1.2e-11 73.9 85 43.5
FAN18G1577 Fragaria x ananassa HOM05D005561 ORTHO05D006834 1.2e-11 73.9 85 43.5
FAN04G1314 Fragaria x ananassa HOM05D005561 ORTHO05D006834 1.6e-11 73.6 85 43.5
RcHm_v2.0_Chr7g0215931 Rosa chinensis HOM05D005561 ORTHO05D006834 1.6e-11 73.6 97 42.3
AT5G42360 Arabidopsis thaliana HOM05D005561 ORTHO05D006834 2.1e-11 73.2 83 43.4
Nitab4.5_0000383g0380 Nicotiana tabacum HOM05D005561 ORTHO05D006834 2.1e-11 73.2 97 41.2
Oeu016877.1 Olea europaea HOM05D005561 ORTHO05D006834 2.1e-11 73.2 95 40.0
HanXRQChr05g0144831 Helianthus annuus HOM05D005561 ORTHO05D006834 2.7e-11 72.8 82 46.3
FAN08G1213 Fragaria x ananassa HOM05D005561 ORTHO05D006834 3.6e-11 72.4 85 42.4
FAN13G3253 Fragaria x ananassa HOM05D005561 ORTHO05D006834 3.6e-11 72.4 85 42.4
Lsat_1_v5_gn_9_45721 Lactuca sativa HOM05D005561 ORTHO05D006834 3.6e-11 72.4 101 37.6
MSTRG.992 Avicennia marina HOM05D005561 ORTHO05D006834 1.0e-10 70.9 85 43.5
BcaC04g22001 Brassica carinata HOM05D005561 ORTHO05D006834 1.8e-10 70.1 92 40.2
C09p24980 Brassica napus HOM05D005561 ORTHO05D006834 1.8e-10 70.1 92 40.2
CARHR284980 Cardamine hirsuta HOM05D005561 ORTHO05D006834 1.8e-10 70.1 94 40.4
BolC9t55390H Brassica oleracea HOM05D005561 ORTHO05D006834 2.3e-10 69.7 92 40.2
ECA238G1647 Erigeron canadensis HOM05D005561 ORTHO05D006834 4.0e-10 68.9 102 41.2
Sp7g08210 Schrenkiella parvula HOM05D005561 ORTHO05D006834 4.0e-10 68.9 96 39.6
ATR0807G210 Amborella trichopoda HOM05D005561 ORTHO05D006834 5.2e-10 68.6 95 34.7
Aqoxy5G00977 Aquilegia oxysepala HOM05D005561 ORTHO05D006834 5.2e-10 68.6 97 39.2
Aa31LG9G12500 Aethionema arabicum HOM05D005561 ORTHO05D006834 6.8e-10 68.2 94 43.6
Migut.N02971 Erythranthe guttata HOM05D005561 ORTHO05D006834 6.8e-10 68.2 85 42.4
BcaB07g31083 Brassica carinata HOM05D005561 ORTHO05D006834 8.8e-10 67.8 97 40.2
MSTRG.22092 Avicennia marina HOM05D005561 ORTHO05D006834 1.2e-09 67.4 84 41.7
SEGI_19604 Sequoiadendron giganteum HOM05D005561 ORTHO05D006834 5.7e-09 65.1 103 33.0
SEGI_32322 Sequoiadendron giganteum HOM05D005561 ORTHO05D006834 5.7e-09 65.1 103 33.0
SalBow6G7068 Salvia bowleyana HOM05D005561 ORTHO05D006834 2.2e-08 63.2 93 39.8
TPR.G26790 Trifolium pratense HOM05D005561 ORTHO05D006834 2.2e-08 63.2 84 41.7
unitig_22.g5815 Utricularia gibba HOM05D005561 ORTHO05D006834 2.2e-08 63.2 96 35.4
MBI05_g33302_MAGBIO Magnolia biondii HOM05D005561 ORTHO05D006834 8.3e-08 61.2 51 52.9
Nitab4.5_0009646g0070 Nicotiana tabacum HOM05D005561 ORTHO05D006834 8.3e-08 61.2 85 40.0
TAR376G1058 Trochodendron aralioides HOM05D005561 ORTHO05D006834 8.3e-08 61.2 87 40.2
Atru.chr13.102 Acer truncatum HOM05D005561 ORTHO05D006834 1.4e-07 60.5 52 55.8
SGA_v2.0_scaffold54G19641 Striga asiatica HOM05D005561 ORTHO05D006834 1.8e-07 60.1 55 49.1
CARHR284990 Cardamine hirsuta HOM05D005561 ORTHO05D006834 3.1e-07 59.3 76 38.2
BcaNung05251 Brassica carinata HOM05D005561 ORTHO05D006834 7.0e-07 58.2 97 38.1
A09p19610 Brassica napus HOM05D005561 ORTHO05D006834 7.0e-07 58.2 54 48.1
BraA09t37572Z Brassica rapa HOM05D005561 ORTHO05D006834 7.0e-07 58.2 54 48.1
SMO270G0041 Selaginella moellendorffii HOM05D005561 ORTHO05D006834 7.7e-06 54.7 56 48.2


User provided reference genes

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