Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g096230 Medicago truncatula HOM05D006403 ORTHO05D008130 3.3e-184 648.3 337 100.0
Lj5g0000123 Lotus japonicus HOM05D006403 ORTHO05D008130 6.8e-129 464.5 348 73.3
Glyma.20G176400 Glycine max HOM05D006403 ORTHO05D008130 3.4e-128 462.2 347 72.0
Ca_10605_v3 Cicer arietinum L. HOM05D006403 ORTHO05D008130 7.5e-128 461.1 260 90.0
Glyma.10G215300 Glycine max HOM05D006403 ORTHO05D008130 5.4e-126 454.9 355 70.4
Phvul.007G090400 Phaseolus vulgaris HOM05D006403 ORTHO05D008130 3.5e-125 452.2 333 73.9
Psat6g186640 Pisum sativum HOM05D006403 ORTHO05D008130 4.5e-125 451.8 252 90.9
arahy.Tifrunner.gnm1.ann1.RC57KJ Arachis hypogaea HOM05D006403 ORTHO05D008130 6.3e-119 431.4 339 69.0
arahy.Tifrunner.gnm1.ann1.3A12IQ Arachis hypogaea HOM05D006403 ORTHO05D008130 1.6e-117 426.8 331 69.8
Lalb_Chr19g0129801 Lupinus albus HOM05D006403 ORTHO05D008130 6.8e-113 411.4 341 65.1
Lalb_Chr01g0010051 Lupinus albus HOM05D006403 ORTHO05D008130 6.2e-106 388.3 336 64.6
Haze_17907 Corylus avellana HOM05D006403 ORTHO05D008130 8.3e-95 351.3 238 73.5
Gohir.A13G121700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 8.3e-95 351.3 275 67.3
Duzib177G0036 Durio zibethinus HOM05D006403 ORTHO05D008130 1.4e-94 350.5 271 67.5
ClCG09G010420 Citrullus lanatus HOM05D006403 ORTHO05D008130 2.1e-93 346.7 333 60.7
QL02p034075 Quercus lobata HOM05D006403 ORTHO05D008130 2.1e-93 346.7 236 72.5
Cfa018202 Carpinus fangiana HOM05D006403 ORTHO05D008130 2.7e-93 346.3 246 71.1
CsaV3_7G024130 Cucumis sativus L. HOM05D006403 ORTHO05D008130 3.5e-93 345.9 258 69.8
MELO3C023667.2 Cucumis melo HOM05D006403 ORTHO05D008130 6.0e-93 345.1 333 59.2
Gohir.D13G125700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 1.3e-92 344.0 275 66.9
Gorai.013G140800 Gossypium raimondii HOM05D006403 ORTHO05D008130 1.3e-92 344.0 275 66.9
COL.COLO4_36653 Corchorus olitorius HOM05D006403 ORTHO05D008130 3.9e-92 342.4 315 58.7
CANSAT78G0580 Cannabis sativa HOM05D006403 ORTHO05D008130 5.1e-92 342.0 243 72.4
CiPaw.16G062500 Carya illinoinensis HOM05D006403 ORTHO05D008130 1.1e-91 340.9 237 72.2
Thecc.08G202600 Theobroma cacao HOM05D006403 ORTHO05D008130 1.9e-91 340.1 262 68.7
Dinv41688 Davidia involucrata HOM05D006403 ORTHO05D008130 3.3e-91 339.3 265 68.3
AUR62013765 Chenopodium quinoa HOM05D006403 ORTHO05D008130 1.2e-90 337.4 326 59.8
GSVIVG01034503001 Vitis vinifera HOM05D006403 ORTHO05D008130 1.2e-90 337.4 267 68.2
Sed0020052 Sechium edule HOM05D006403 ORTHO05D008130 2.8e-90 336.3 260 67.7
Nn8g40759 Nelumbo nucifera HOM05D006403 ORTHO05D008130 3.6e-90 335.9 233 71.7
TWI32G0485 Tripterygium wilfordii HOM05D006403 ORTHO05D008130 1.1e-89 334.3 318 57.2
RcHm_v2.0_Chr3g0495761 Rosa chinensis HOM05D006403 ORTHO05D008130 1.4e-89 334.0 229 72.5
CSS0028864 Camellia sinensis var. sinensis HOM05D006403 ORTHO05D008130 1.8e-89 333.6 217 77.9
Manes.18G099900 Manihot esculenta HOM05D006403 ORTHO05D008130 2.3e-89 333.2 220 76.8
A09p42040 Brassica napus HOM05D006403 ORTHO05D008130 4.0e-89 332.4 239 72.8
Ciclev10001887m.g Citrus clementina HOM05D006403 ORTHO05D008130 4.0e-89 332.4 218 76.1
Hund27413 Selenicereus undatus HOM05D006403 ORTHO05D008130 8.9e-89 331.3 240 71.2
Sc23g0004870 Simmondsia chinensis HOM05D006403 ORTHO05D008130 1.2e-88 330.9 261 68.2
BraA09t39690Z Brassica rapa HOM05D006403 ORTHO05D008130 2.0e-88 330.1 239 72.4
Eucgr.F02626 Eucalyptus grandis HOM05D006403 ORTHO05D008130 2.0e-88 330.1 274 64.2
C05p21830 Brassica napus HOM05D006403 ORTHO05D008130 3.4e-88 329.3 239 72.0
HanXRQChr02g0040151 Helianthus annuus HOM05D006403 ORTHO05D008130 4.4e-88 328.9 238 71.4
EL10Ac1g00740 Beta vulgaris HOM05D006403 ORTHO05D008130 5.8e-88 328.6 294 60.9
BolC5t30876H Brassica oleracea HOM05D006403 ORTHO05D008130 5.8e-88 328.6 239 71.5
FvH4_1g29740 Fragaria vesca HOM05D006403 ORTHO05D008130 7.6e-88 328.2 228 71.9
FAN19G1279 Fragaria x ananassa HOM05D006403 ORTHO05D008130 7.6e-88 328.2 228 71.9
Potri.013G114500 Populus trichocarpa HOM05D006403 ORTHO05D008130 9.9e-88 327.8 242 69.0
PGR042G3834 Punica granatum HOM05D006403 ORTHO05D008130 1.3e-87 327.4 258 65.9
Potri.019G085200 Populus trichocarpa HOM05D006403 ORTHO05D008130 1.7e-87 327.0 242 68.2
Oeu017876.2 Olea europaea HOM05D006403 ORTHO05D008130 2.9e-87 326.2 275 64.4
BcaB03g14190 Brassica carinata HOM05D006403 ORTHO05D008130 3.7e-87 325.9 220 76.4
AUR62023390 Chenopodium quinoa HOM05D006403 ORTHO05D008130 3.7e-87 325.9 206 78.6
FAN28G0939 Fragaria x ananassa HOM05D006403 ORTHO05D008130 3.7e-87 325.9 228 71.5
BraA07t29182Z Brassica rapa HOM05D006403 ORTHO05D008130 4.9e-87 325.5 281 65.1
ECA233G3842 Erigeron canadensis HOM05D006403 ORTHO05D008130 6.4e-87 325.1 200 80.5
Rhsim08G0049700 Rhododendron simsii HOM05D006403 ORTHO05D008130 6.4e-87 325.1 206 79.1
FAN26G2688 Fragaria x ananassa HOM05D006403 ORTHO05D008130 8.4e-87 324.7 228 71.5
SGA_v2.0_scaffold24G10549 Striga asiatica HOM05D006403 ORTHO05D008130 8.4e-87 324.7 302 59.3
Sp1g20210 Schrenkiella parvula HOM05D006403 ORTHO05D008130 1.1e-86 324.3 222 76.1
Solyc11g017200.2 Solanum lycopersicum HOM05D006403 ORTHO05D008130 1.4e-86 323.9 218 74.8
Sopen11g009110 Solanum pennellii HOM05D006403 ORTHO05D008130 1.4e-86 323.9 218 74.8
A07p14250 Brassica napus HOM05D006403 ORTHO05D008130 1.9e-86 323.6 280 64.3
Peaxi162Scf00495g00011 Petunia axillaris HOM05D006403 ORTHO05D008130 2.4e-86 323.2 218 75.2
Aa31LG7G6600 Aethionema arabicum HOM05D006403 ORTHO05D008130 4.1e-86 322.4 250 68.8
AL1G36240 Arabidopsis lyrata HOM05D006403 ORTHO05D008130 4.1e-86 322.4 221 76.0
PGSC0003DMG400009235 Solanum tuberosum HOM05D006403 ORTHO05D008130 4.1e-86 322.4 218 74.8
Lsat_1_v5_gn_1_12940 Lactuca sativa HOM05D006403 ORTHO05D008130 5.4e-86 322.0 224 76.8
PSO675G8117 Papaver somniferum HOM05D006403 ORTHO05D008130 5.4e-86 322.0 278 62.6
Actinidia29416 Actinidia chinensis HOM05D006403 ORTHO05D008130 7.1e-86 321.6 246 69.1
MD12G1013600 Malus domestica HOM05D006403 ORTHO05D008130 7.1e-86 321.6 220 73.2
Nitab4.5_0000159g0220 Nicotiana tabacum HOM05D006403 ORTHO05D008130 7.1e-86 321.6 218 74.8
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 9.2e-86 321.2 323 57.9
C07p20970 Brassica napus HOM05D006403 ORTHO05D008130 1.6e-85 320.5 223 74.9
Duzib116G0580 Durio zibethinus HOM05D006403 ORTHO05D008130 1.6e-85 320.5 220 75.5
Thhalv10008318m.g Eutrema salsugineum HOM05D006403 ORTHO05D008130 1.6e-85 320.5 208 77.9
PSO732G0029 Papaver somniferum HOM05D006403 ORTHO05D008130 1.6e-85 320.5 208 76.4
AT1G22700 Arabidopsis thaliana HOM05D006403 ORTHO05D008130 2.1e-85 320.1 222 74.3
Carub.0001s2222 Capsella rubella HOM05D006403 ORTHO05D008130 2.7e-85 319.7 207 78.7
CAN.G61.29 Capsicum annuum HOM05D006403 ORTHO05D008130 2.7e-85 319.7 266 65.0
MD14G1011000 Malus domestica HOM05D006403 ORTHO05D008130 2.7e-85 319.7 220 72.3
SalBow7G4031 Salvia bowleyana HOM05D006403 ORTHO05D008130 2.7e-85 319.7 204 78.9
FAN23G0108 Fragaria x ananassa HOM05D006403 ORTHO05D008130 4.6e-85 318.9 228 70.6
Prupe.7G018000 Prunus persica HOM05D006403 ORTHO05D008130 1.0e-84 317.8 219 72.6
Cc00_g04840 Coffea canephora HOM05D006403 ORTHO05D008130 1.3e-84 317.4 230 68.7
Atru.chr13.1807 Acer truncatum HOM05D006403 ORTHO05D008130 3.9e-84 315.8 259 62.9
Atru.chr13.1815 Acer truncatum HOM05D006403 ORTHO05D008130 3.9e-84 315.8 259 62.9
MSTRG.25437 Avicennia marina HOM05D006403 ORTHO05D008130 3.9e-84 315.8 220 73.6
Hma1.2p1_0072F.1_g038220 Hydrangea macrophylla HOM05D006403 ORTHO05D008130 5.1e-84 315.5 231 69.7
Lj7A297T43 Lonicera japonica HOM05D006403 ORTHO05D008130 6.6e-84 315.1 244 67.6
Sabra13G0096800 Salix brachista HOM05D005981 ORTHO05D008130 6.6e-84 315.1 321 57.0
CARHR023070 Cardamine hirsuta HOM05D006403 ORTHO05D008130 1.1e-83 314.3 222 73.9
THA.LOC104800111 Tarenaya hassleriana HOM05D006403 ORTHO05D008130 3.3e-83 312.8 271 61.6
Aqoxy7G00855 Aquilegia oxysepala HOM05D006403 ORTHO05D008130 9.6e-83 311.2 316 55.1
Migut.C01242 Erythranthe guttata HOM05D006403 ORTHO05D008130 4.7e-82 308.9 226 69.9
Oeu000555.1 Olea europaea HOM05D006403 ORTHO05D008130 8.1e-82 308.1 258 64.0
BolC7t42628H Brassica oleracea HOM05D006403 ORTHO05D008130 1.8e-81 307.0 268 63.1
MBI17_g12885_MAGBIO Magnolia biondii HOM05D006403 ORTHO05D008130 2.4e-81 306.6 359 50.4
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 1.5e-80 303.9 269 59.9
BcaC06g34984 Brassica carinata HOM05D006403 ORTHO05D008130 4.4e-80 302.4 202 76.7
ATR1127G194 Amborella trichopoda HOM05D006403 ORTHO05D008130 4.9e-79 298.9 203 70.9
CDE07G1616 Ceratophyllum demersum HOM05D006403 ORTHO05D008130 4.9e-79 298.9 191 78.5
vmacro18286 Vaccinium macrocarpon HOM05D006403 ORTHO05D008130 4.6e-77 292.4 289 57.1
HPP92_025360 Vanilla planifolia HOM05D006403 ORTHO05D008130 1.3e-76 290.8 203 71.9
Cpa.g.sc66.55 Carica papaya HOM05D006403 ORTHO05D008130 1.1e-73 281.2 164 83.5
TPR.G1762 Trifolium pratense HOM05D006403 ORTHO05D008130 6.4e-71 271.9 144 92.4
SEGI_04324 Sequoiadendron giganteum HOM05D006403 ORTHO05D008130 2.7e-69 266.5 217 60.8
unitig_747.g21467 Utricularia gibba HOM05D006403 ORTHO05D008130 4.6e-69 265.8 193 71.0
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 5.1e-68 262.3 220 64.5
BcaB03g14188 Brassica carinata HOM05D006403 ORTHO05D008130 1.6e-66 257.3 220 65.0
Zm00001eb320270 Zea mays HOM05D006403 ORTHO05D008130 4.0e-65 252.7 203 64.5
AagrBONN_evm.TU.Sc2ySwM_362.2277 Anthoceros agrestis HOM05D006403 ORTHO05D008130 5.6e-59 232.3 187 62.0
Pp3c2_18600 Physcomitrium patens HOM05D006403 ORTHO05D008130 3.7e-58 229.6 205 56.6
Mapoly0015s0041 Marchantia polymorpha HOM05D006403 ORTHO05D008130 3.3e-51 206.5 227 50.7
Pp3c1_20680 Physcomitrium patens HOM05D006403 ORTHO05D008130 1.5e-48 197.6 156 62.2
CBR_g38402 Chara braunii HOM05D006403 ORTHO05D008130 2.0e-48 197.2 203 51.2
Cre12.g524300 Chlamydomonas reinhardtii HOM05D006403 ORTHO05D008130 7.9e-45 185.3 180 51.7
SMO118G0451 Selaginella moellendorffii HOM05D006403 ORTHO05D008130 2.5e-43 180.3 205 44.4
MCO16G319 Micromonas commoda HOM05D006403 ORTHO05D008130 4.3e-43 179.5 177 48.6
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 1.0e-39 168.3 128 72.7
TPR.G20530 Trifolium pratense HOM05D006403 ORTHO05D008130 2.9e-39 166.8 94 91.5
RcHm_v2.0_Chr7g0219671 Rosa chinensis HOM05D006403 ORTHO05D008130 1.4e-36 157.9 142 59.9
RcHm_v2.0_Chr2g0092511 Rosa chinensis HOM05D006403 ORTHO05D008130 3.8e-31 139.8 157 52.2
PRCOL_00002033 Prasinoderma coloniale HOM05D006403 ORTHO05D008130 1.3e-23 114.8 142 39.4
RcHm_v2.0_Chr7g0199541 Rosa chinensis HOM05D006403 ORTHO05D008130 7.2e-22 109.0 65 83.1
Os08g0347500 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 2.9e-15 87.0 53 81.1
Hma1.2p1_0072F.1_g038240 Hydrangea macrophylla HOM05D006403 ORTHO05D228046 8.5e-15 85.5 89 56.2
Lalb_Chr05g0214601 Lupinus albus HOM05D002462 ORTHO05D002893 4.2e-06 56.6 126 25.4


User provided reference genes

Program Settings