Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g089960 Medicago truncatula HOM05D003358 ORTHO05D003864 8.6e-249 863.2 443 100.0
arahy.Tifrunner.gnm1.ann1.KX9J6A Arachis hypogaea HOM05D003358 ORTHO05D003864 9.7e-59 231.9 315 47.9
arahy.Tifrunner.gnm1.ann1.N9ZP1U Arachis hypogaea HOM05D003358 ORTHO05D003864 1.7e-58 231.1 306 48.7
Glyma.10G024100 Glycine max HOM05D003358 ORTHO05D003864 3.7e-58 229.9 269 50.9
VMungo0720G0236 Vigna mungo HOM05D003358 ORTHO05D003864 8.2e-58 228.8 273 49.8
Phvul.007G169100 Phaseolus vulgaris HOM05D003358 ORTHO05D003864 2.4e-57 227.3 278 50.0
Glyma.02G149800 Glycine max HOM05D003358 ORTHO05D003864 4.1e-57 226.5 273 49.8
Lalb_Chr06g0163131 Lupinus albus HOM05D003358 ORTHO05D003864 3.4e-56 223.4 271 49.4
Lj5g0011221 Lotus japonicus HOM05D003358 ORTHO05D003864 7.7e-56 222.2 269 49.4
Ca_10402_v3 Cicer arietinum L. HOM05D003358 ORTHO05D003864 2.2e-55 220.7 259 51.0
Manes.05G072700 Manihot esculenta HOM05D003358 ORTHO05D003864 4.2e-54 216.5 277 48.7
CsaV3_7G028540 Cucumis sativus L. HOM05D003358 ORTHO05D003864 9.4e-54 215.3 279 46.6
Medtr1g089940 Medicago truncatula HOM05D003358 ORTHO05D003864 1.6e-53 214.5 278 46.8
Prupe.8G246900 Prunus persica HOM05D003358 ORTHO05D003864 2.7e-53 213.8 276 47.1
CANSAT25G0133 Cannabis sativa HOM05D003358 ORTHO05D003864 3.6e-53 213.4 271 48.3
ECA247G2569 Erigeron canadensis HOM05D003358 ORTHO05D003864 3.6e-53 213.4 271 49.1
Haze_04760 Corylus avellana HOM05D003358 ORTHO05D003864 4.7e-53 213.0 313 46.3
MELO3C015867.2 Cucumis melo HOM05D003358 ORTHO05D003864 6.1e-53 212.6 279 46.2
Dinv11261 Davidia involucrata HOM05D003358 ORTHO05D003864 7.9e-53 212.2 271 48.3
Nn1g02094 Nelumbo nucifera HOM05D003358 ORTHO05D003864 7.9e-53 212.2 277 47.3
Nitab4.5_0007767g0030 Nicotiana tabacum HOM05D003358 ORTHO05D003864 7.9e-53 212.2 294 44.9
Psat6g168920 Pisum sativum HOM05D003358 ORTHO05D003864 7.9e-53 212.2 261 49.4
QL12p022545 Quercus lobata HOM05D003358 ORTHO05D003864 7.9e-53 212.2 274 48.2
ClCG09G006810 Citrullus lanatus HOM05D003358 ORTHO05D003864 1.0e-52 211.8 279 46.2
HanXRQChr10g0282971 Helianthus annuus HOM05D003358 ORTHO05D003864 1.0e-52 211.8 271 49.1
TPR.G13403 Trifolium pratense HOM05D003358 ORTHO05D003864 1.0e-52 211.8 235 53.2
SalBow4G3039 Salvia bowleyana HOM05D003358 ORTHO05D003864 1.4e-52 211.5 270 48.1
CiPaw.07G095400 Carya illinoinensis HOM05D003358 ORTHO05D003864 1.8e-52 211.1 264 50.0
MD11G1291200 Malus domestica HOM05D003358 ORTHO05D003864 2.3e-52 210.7 274 46.4
Potri.014G138000 Populus trichocarpa HOM05D003358 ORTHO05D003864 2.3e-52 210.7 275 47.3
FvH4_2g24080 Fragaria vesca HOM05D003358 ORTHO05D003864 3.9e-52 209.9 276 46.4
FAN15G0418 Fragaria x ananassa HOM05D003358 ORTHO05D003864 3.9e-52 209.9 276 46.4
FAN24G0501 Fragaria x ananassa HOM05D003358 ORTHO05D003864 3.9e-52 209.9 276 46.4
Sabra14G0104100 Salix brachista HOM05D003358 ORTHO05D003864 3.9e-52 209.9 275 46.9
Oeu001439.1 Olea europaea HOM05D003358 ORTHO05D003864 5.1e-52 209.5 270 48.5
Peaxi162Scf00783g00337 Petunia axillaris HOM05D003358 ORTHO05D003864 5.1e-52 209.5 274 48.5
FAN20G3017 Fragaria x ananassa HOM05D003358 ORTHO05D003864 6.7e-52 209.1 276 46.4
RcHm_v2.0_Chr6g0291861 Rosa chinensis HOM05D003358 ORTHO05D003864 6.7e-52 209.1 276 45.7
Migut.D00256 Erythranthe guttata HOM05D003358 ORTHO05D003864 8.8e-52 208.8 270 47.8
Medtr1g089910 Medicago truncatula HOM05D003358 ORTHO05D003864 8.8e-52 208.8 290 45.2
Lj1C44G0 Lonicera japonica HOM05D003358 ORTHO05D003864 1.1e-51 208.4 271 46.9
TPR.G13400 Trifolium pratense HOM05D003358 ORTHO05D003864 1.1e-51 208.4 260 48.1
Medtr1g089900 Medicago truncatula HOM05D003358 ORTHO05D003864 1.5e-51 208.0 269 47.2
Sed0023278 Sechium edule HOM05D003358 ORTHO05D003864 1.5e-51 208.0 276 46.7
CSS0018318 Camellia sinensis var. sinensis HOM05D003358 ORTHO05D003864 2.0e-51 207.6 271 48.3
CAN.G1682.13 Capsicum annuum HOM05D003358 ORTHO05D003864 2.0e-51 207.6 274 47.4
Hma1.2p1_0257F.1_g103860 Hydrangea macrophylla HOM05D003358 ORTHO05D003864 2.0e-51 207.6 271 48.0
Lsat_1_v5_gn_9_4540 Lactuca sativa HOM05D003358 ORTHO05D003864 2.0e-51 207.6 321 44.2
Cfa006095 Carpinus fangiana HOM05D003358 ORTHO05D003864 2.6e-51 207.2 267 48.3
Cc01_g19840 Coffea canephora HOM05D003358 ORTHO05D003864 2.6e-51 207.2 271 46.9
MD03G1270200 Malus domestica HOM05D003358 ORTHO05D003864 2.6e-51 207.2 274 45.6
PGSC0003DMG402020120 Solanum tuberosum HOM05D003358 ORTHO05D003864 3.3e-51 206.8 274 47.4
Solyc06g084360.4 Solanum lycopersicum HOM05D003358 ORTHO05D003864 4.4e-51 206.5 268 47.4
Eucgr.H01525 Eucalyptus grandis HOM05D003358 ORTHO05D003864 5.7e-51 206.1 275 45.8
MSTRG.21581 Avicennia marina HOM05D003358 ORTHO05D003864 7.4e-51 205.7 275 46.2
EL10Ac7g17196 Beta vulgaris HOM05D003358 ORTHO05D003864 1.7e-50 204.5 282 46.8
PSO170G4489 Papaver somniferum HOM05D003358 ORTHO05D003864 1.7e-50 204.5 275 45.5
PSO407G0137 Papaver somniferum HOM05D003358 ORTHO05D003864 1.7e-50 204.5 275 45.5
Sopen06g035750 Solanum pennellii HOM05D003358 ORTHO05D003864 1.7e-50 204.5 268 47.0
Hund05356 Selenicereus undatus HOM05D003358 ORTHO05D003864 2.2e-50 204.1 282 46.8
TWI23G0223 Tripterygium wilfordii HOM05D003358 ORTHO05D003864 2.8e-50 203.8 275 45.1
TAR633G1108 Trochodendron aralioides HOM05D003358 ORTHO05D003864 2.8e-50 203.8 328 43.0
Sc17g0003900 Simmondsia chinensis HOM05D003358 ORTHO05D003864 3.7e-50 203.4 277 45.5
CSS0003095 Camellia sinensis var. sinensis HOM05D003358 ORTHO05D003864 4.8e-50 203.0 290 44.8
Gohir.A08G044700 Gossypium hirsutum HOM05D003358 ORTHO05D003864 4.8e-50 203.0 274 45.6
Gohir.D08G054400 Gossypium hirsutum HOM05D003358 ORTHO05D003864 4.8e-50 203.0 274 45.6
Gorai.004G054800 Gossypium raimondii HOM05D003358 ORTHO05D003864 4.8e-50 203.0 274 45.6
ATR0626G053 Amborella trichopoda HOM05D003358 ORTHO05D003864 8.2e-50 202.2 309 42.4
Gohir.A11G120000 Gossypium hirsutum HOM05D003358 ORTHO05D003864 8.2e-50 202.2 273 45.1
Thecc.01G284800 Theobroma cacao HOM05D003358 ORTHO05D003864 8.2e-50 202.2 273 45.4
GSVIVG01011070001 Vitis vinifera HOM05D003358 ORTHO05D003864 1.4e-49 201.4 275 45.1
Ciclev10020955m.g Citrus clementina HOM05D003358 ORTHO05D003864 1.8e-49 201.1 273 45.8
Ciclev10020957m.g Citrus clementina HOM05D003358 ORTHO05D003864 1.8e-49 201.1 275 45.8
AUR62036783 Chenopodium quinoa HOM05D003358 ORTHO05D003864 2.4e-49 200.7 282 46.1
AUR62033697 Chenopodium quinoa HOM05D003358 ORTHO05D003864 7.0e-49 199.1 282 45.7
CDE07G0407 Ceratophyllum demersum HOM05D003358 ORTHO05D003864 1.2e-48 198.4 329 41.3
CDE05G1806 Ceratophyllum demersum HOM05D003358 ORTHO05D003864 1.5e-48 198.0 308 42.5
Nn4g26144 Nelumbo nucifera HOM05D003358 ORTHO05D003864 7.7e-48 195.7 277 45.1
CAN.G1682.14 Capsicum annuum HOM05D003358 ORTHO05D003864 1.3e-47 194.9 260 46.9
Aa31LG1G29500 Aethionema arabicum HOM05D003358 ORTHO05D003864 2.2e-47 194.1 273 42.9
BcaB07g31539 Brassica carinata HOM05D003358 ORTHO05D003864 5.0e-47 193.0 274 42.0
CARHR047070 Cardamine hirsuta HOM05D003358 ORTHO05D003864 5.0e-47 193.0 268 43.3
DCAR_012453 Daucus carota HOM05D003358 ORTHO05D003864 5.0e-47 193.0 256 45.3
TPR.G13299 Trifolium pratense HOM05D003358 ORTHO05D003864 5.0e-47 193.0 261 44.4
AL2G11230 Arabidopsis lyrata HOM05D003358 ORTHO05D003864 6.5e-47 192.6 273 42.1
Rhsim01G0276900 Rhododendron simsii HOM05D003358 ORTHO05D003864 8.5e-47 192.2 269 46.1
Sp2g00790 Schrenkiella parvula HOM05D003358 ORTHO05D003864 8.5e-47 192.2 274 42.0
BolC9t54582H Brassica oleracea HOM05D003358 ORTHO05D003864 1.1e-46 191.8 274 42.0
AT1G63900 Arabidopsis thaliana HOM05D003358 ORTHO05D003864 1.5e-46 191.4 273 41.8
Carub.0002s0094 Capsella rubella HOM05D003358 ORTHO05D003864 1.5e-46 191.4 273 42.1
Ah.08g212910 Amaranthus hybridus HOM05D003358 ORTHO05D003864 1.9e-46 191.0 261 46.0
BcaC04g22672 Brassica carinata HOM05D003358 ORTHO05D003864 2.5e-46 190.7 274 41.6
C09p16810 Brassica napus HOM05D003358 ORTHO05D003864 2.5e-46 190.7 274 41.6
Thhalv10008106m.g Eutrema salsugineum HOM05D003358 ORTHO05D003864 2.5e-46 190.7 274 41.6
Actinidia24873 Actinidia chinensis HOM05D003358 ORTHO05D003864 3.2e-46 190.3 271 43.9
A09p13990 Brassica napus HOM05D003358 ORTHO05D003864 4.2e-46 189.9 274 41.2
BraA09t37046Z Brassica rapa HOM05D003358 ORTHO05D003864 4.2e-46 189.9 274 41.2
HPP92_000042 Vanilla planifolia HOM05D003358 ORTHO05D003864 4.2e-46 189.9 268 42.9
MBI17_g17897_MAGBIO Magnolia biondii HOM05D003358 ORTHO05D003864 5.5e-46 189.5 260 46.5
Medtr1g089920 Medicago truncatula HOM05D003358 ORTHO05D003864 1.2e-45 188.3 299 42.1
Actinidia00727 Actinidia chinensis HOM05D003358 ORTHO05D003864 2.1e-45 187.6 266 43.6
SGA_v2.0_scaffold1G00442 Striga asiatica HOM05D003358 ORTHO05D003864 6.1e-45 186.0 273 44.7
THA.LOC104823098 Tarenaya hassleriana HOM05D003358 ORTHO05D003864 1.0e-44 185.3 252 44.4
unitig_0.g80 Utricularia gibba HOM05D003358 ORTHO05D003864 1.0e-44 185.3 269 44.2
Zm00001eb110530 Zea mays HOM05D003358 ORTHO05D003864 3.0e-44 183.7 275 40.7
Medtr7g094290 Medicago truncatula HOM05D003358 ORTHO05D003864 5.2e-44 183.0 276 43.5
Pp3c22_7850 Physcomitrium patens HOM05D003358 ORTHO05D003864 6.7e-44 182.6 277 39.4
Mapoly0009s0167 Marchantia polymorpha HOM05D003358 ORTHO05D003864 8.8e-44 182.2 277 41.2
Os07g0647800 Oryza sativa ssp. japonica HOM05D003358 ORTHO05D003864 8.8e-44 182.2 271 41.7
vmacro14942 Vaccinium macrocarpon HOM05D003358 ORTHO05D003864 8.8e-44 182.2 289 42.2
vmacro02543 Vaccinium macrocarpon HOM05D003358 ORTHO05D003864 2.6e-43 180.6 268 44.4
SMO116G0196 Selaginella moellendorffii HOM05D003358 ORTHO05D003864 3.3e-43 180.3 277 40.8
Nitab4.5_0002093g0030 Nicotiana tabacum HOM05D003358 ORTHO05D003864 4.4e-43 179.9 360 35.8
Aa31LG10G16880 Aethionema arabicum HOM05D003358 ORTHO05D003864 1.1e-41 175.3 272 39.7
Pp3c19_9460 Physcomitrium patens HOM05D003358 ORTHO05D003864 2.4e-41 174.1 277 39.0
AagrBONN_evm.TU.Sc2ySwM_368.2570 Anthoceros agrestis HOM05D003358 ORTHO05D003864 3.1e-41 173.7 276 39.1
Sed0022837 Sechium edule HOM05D003358 ORTHO05D003864 4.5e-40 169.9 238 44.5
Duzib138G0559 Durio zibethinus HOM05D003358 ORTHO05D003864 5.9e-40 169.5 271 41.0
Thhalv10024073m.g Eutrema salsugineum HOM05D003358 ORTHO05D003864 1.7e-39 167.9 272 40.1
SEGI_02468 Sequoiadendron giganteum HOM05D003358 ORTHO05D003864 5.0e-39 166.4 270 39.6
Zm00001eb329440 Zea mays HOM05D003358 ORTHO05D003864 1.4e-36 158.3 271 38.4
TPR.G32824 Trifolium pratense HOM05D003358 ORTHO05D003864 2.3e-36 157.5 248 37.9
A04p00330 Brassica napus HOM05D003358 ORTHO05D003864 8.8e-36 155.6 277 38.3
Cpa.g.sc9.121 Carica papaya HOM05D003358 ORTHO05D003864 3.4e-35 153.7 280 39.6
BraA04t15751Z Brassica rapa HOM05D003358 ORTHO05D003864 9.8e-35 152.1 287 37.6
MD11G1291000 Malus domestica HOM05D003358 ORTHO05D003864 2.2e-34 151.0 252 36.1
BcaC02g10340 Brassica carinata HOM05D003358 ORTHO05D003864 2.8e-34 150.6 304 35.5
Duzib211G0202 Durio zibethinus HOM05D003358 ORTHO05D003864 3.7e-34 150.2 273 38.5
Rhsim13G0022000 Rhododendron simsii HOM05D003358 ORTHO05D003864 6.3e-34 149.4 259 40.5
AT1G59560 Arabidopsis thaliana HOM05D003358 ORTHO05D003864 2.4e-33 147.5 268 35.1
C04p30150 Brassica napus HOM05D003358 ORTHO05D003864 7.0e-33 146.0 305 35.4
Prupe.8G246300 Prunus persica HOM05D003358 ORTHO05D003864 2.7e-32 144.1 272 36.0
BolC4t24547H Brassica oleracea HOM05D003358 ORTHO05D003864 1.3e-31 141.7 312 34.9
Gohir.D11G124766 Gossypium hirsutum HOM05D003358 ORTHO05D003864 1.3e-31 141.7 213 43.2
CSS0028362 Camellia sinensis var. sinensis HOM05D003358 ORTHO05D003864 2.9e-31 140.6 215 42.3
Migut.N02147 Erythranthe guttata HOM05D003358 ORTHO05D003864 3.8e-31 140.2 295 35.3
Gorai.007G133700 Gossypium raimondii HOM05D003358 ORTHO05D003864 8.5e-31 139.0 285 34.4
Migut.N02149 Erythranthe guttata HOM05D003358 ORTHO05D003864 2.5e-30 137.5 300 32.3
Migut.N02146 Erythranthe guttata HOM05D003358 ORTHO05D003864 8.0e-29 132.5 246 35.8
BcaC07g42712 Brassica carinata HOM05D003358 ORTHO05D003864 6.3e-26 122.9 246 34.1
Prupe.8G246200 Prunus persica HOM05D003358 ORTHO05D003864 3.1e-25 120.6 228 35.1
A09p54880 Brassica napus HOM05D003358 ORTHO05D003864 7.0e-25 119.4 255 35.3
FAN27G2094 Fragaria x ananassa HOM05D003358 ORTHO05D003864 2.0e-24 117.9 146 48.6
Atru.chr9.1958 Acer truncatum HOM05D003358 ORTHO05D003864 5.9e-24 116.3 223 37.7
TAR362G0768 Trochodendron aralioides HOM05D003358 ORTHO05D003864 7.7e-24 115.9 153 45.1
Aqoxy2G03211 Aquilegia oxysepala HOM05D003358 ORTHO05D003864 7.2e-22 109.4 261 33.3
TPR.G36026 Trifolium pratense HOM05D003358 ORTHO05D003864 1.3e-18 98.6 135 43.0
Sp5g00470 Schrenkiella parvula HOM05D003358 ORTHO05D003864 4.1e-17 93.6 307 26.4
Atru.chr5.1347 Acer truncatum HOM05D003358 ORTHO05D003864 5.4e-17 93.2 82 58.5
Oeu011175.1 Olea europaea HOM05D000273 ORTHO05D000198 9.2e-17 92.4 195 36.4
Atru.chr5.1348 Acer truncatum HOM05D003358 ORTHO05D003864 2.7e-16 90.9 110 47.3
Carub.0002s0588 Capsella rubella HOM05D003358 ORTHO05D003864 4.6e-16 90.1 147 40.8
AL1G26420 Arabidopsis lyrata HOM05D003358 ORTHO05D003864 7.8e-16 89.4 266 27.8
Migut.N02166 Erythranthe guttata HOM05D003358 ORTHO05D003864 2.3e-15 87.8 149 38.3
AL5G45870 Arabidopsis lyrata HOM05D003358 ORTHO05D003864 5.0e-15 86.7 267 28.5
AL1G26440 Arabidopsis lyrata HOM05D003358 ORTHO05D003864 1.9e-14 84.7 249 30.5
Aqoxy4G02508 Aquilegia oxysepala HOM05D003358 ORTHO05D003864 2.8e-13 80.9 147 38.1
Carub.0005s1267 Capsella rubella HOM05D003358 ORTHO05D003864 2.3e-12 77.8 205 30.2
BolC8t49311H Brassica oleracea HOM05D003358 ORTHO05D003864 2.6e-11 74.3 243 31.7
BolC8t49309H Brassica oleracea HOM05D003358 ORTHO05D003864 7.5e-11 72.8 243 31.3
DCAR_018399 Daucus carota HOM05D000027 ORTHO05D003864 7.5e-11 72.8 191 30.4
Psat6g168880 Pisum sativum HOM05D003358 ORTHO05D003864 2.2e-10 71.2 95 47.4
BcaC07g42715 Brassica carinata HOM05D003358 ORTHO05D003864 8.3e-10 69.3 87 44.8
A08p31850 Brassica napus HOM05D003358 ORTHO05D003864 8.3e-10 69.3 232 31.0
C03p05670 Brassica napus HOM05D003358 ORTHO05D003864 8.3e-10 69.3 255 28.6
BolC3t13079H Brassica oleracea HOM05D003358 ORTHO05D003864 8.3e-10 69.3 255 28.6
Prupe.8G246600 Prunus persica HOM05D003358 ORTHO05D003864 1.1e-09 68.9 134 31.3
BraA03t09834Z Brassica rapa HOM05D003358 ORTHO05D003864 1.4e-09 68.6 256 25.4
Carub.0001s1424 Capsella rubella HOM05D003358 ORTHO05D003864 4.1e-09 67.0 227 30.4
C03p05680 Brassica napus HOM05D026960 ORTHO05D031882 7.0e-09 66.2 245 29.8
BcaB03g13087 Brassica carinata HOM05D003358 ORTHO05D003864 1.6e-08 65.1 267 25.5
BolC8t51358H Brassica oleracea HOM05D003358 ORTHO05D003864 1.6e-08 65.1 60 51.7
Lj2C1179T8 Lonicera japonica HOM05D003358 ORTHO05D003864 4.6e-08 63.5 178 30.9
BolC8t49305H Brassica oleracea HOM05D003358 ORTHO05D003864 1.0e-07 62.4 228 28.9
BcaB01g06302 Brassica carinata HOM05D003358 ORTHO05D003864 1.3e-07 62.0 272 25.0
C08p16850 Brassica napus HOM05D003358 ORTHO05D003864 1.3e-07 62.0 219 29.7
THA.LOC104820691 Tarenaya hassleriana HOM05D003358 ORTHO05D003864 1.7e-07 61.6 124 32.3
BcaB01g06301 Brassica carinata HOM05D011503 ORTHO05D013743 3.9e-07 60.5 239 26.4
CARHR173350 Cardamine hirsuta HOM05D003358 ORTHO05D003864 5.0e-07 60.1 81 43.2
Medtr3g103470 Medicago truncatula HOM05D003358 ORTHO05D264877 6.6e-07 59.7 59 49.2
BolC3t13080H Brassica oleracea HOM05D026960 ORTHO05D031882 1.9e-06 58.2 265 26.8
MELO3C029935.2 Cucumis melo HOM05D003358 ORTHO05D003864 2.5e-06 57.8 55 52.7
BcaC07g38753 Brassica carinata HOM05D003358 ORTHO05D003864 4.3e-06 57.0 241 27.8
C08p16840 Brassica napus HOM05D003358 ORTHO05D003864 4.3e-06 57.0 241 27.8
AL1G26480 Arabidopsis lyrata HOM05D003358 ORTHO05D013743 5.6e-06 56.6 263 25.1


User provided reference genes

Program Settings