Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g089920 Medicago truncatula HOM05D003358 ORTHO05D003864 9.2e-159 563.5 291 100.0
Glyma.10G024100 Glycine max HOM05D003358 ORTHO05D003864 1.2e-57 227.6 265 50.6
VMungo0720G0236 Vigna mungo HOM05D003358 ORTHO05D003864 1.2e-57 227.6 265 50.2
Ca_10402_v3 Cicer arietinum L. HOM05D003358 ORTHO05D003864 2.0e-57 226.9 261 49.8
Glyma.02G149800 Glycine max HOM05D003358 ORTHO05D003864 2.0e-57 226.9 265 50.2
Phvul.007G169100 Phaseolus vulgaris HOM05D003358 ORTHO05D003864 3.5e-57 226.1 265 49.8
Ciclev10020955m.g Citrus clementina HOM05D003358 ORTHO05D003864 2.3e-56 223.4 272 47.8
Lalb_Chr06g0163131 Lupinus albus HOM05D003358 ORTHO05D003864 3.0e-56 223.0 265 49.4
CiPaw.07G095400 Carya illinoinensis HOM05D003358 ORTHO05D003864 1.1e-55 221.1 266 49.2
arahy.Tifrunner.gnm1.ann1.KX9J6A Arachis hypogaea HOM05D003358 ORTHO05D003864 1.9e-55 220.3 265 49.1
arahy.Tifrunner.gnm1.ann1.N9ZP1U Arachis hypogaea HOM05D003358 ORTHO05D003864 1.9e-55 220.3 265 49.1
Haze_04760 Corylus avellana HOM05D003358 ORTHO05D003864 1.9e-55 220.3 266 49.2
Lj5g0011221 Lotus japonicus HOM05D003358 ORTHO05D003864 3.3e-55 219.5 265 48.7
Ciclev10020957m.g Citrus clementina HOM05D003358 ORTHO05D003864 5.6e-55 218.8 267 47.6
Prupe.8G246900 Prunus persica HOM05D003358 ORTHO05D003864 7.3e-55 218.4 268 48.5
QL12p022545 Quercus lobata HOM05D003358 ORTHO05D003864 7.3e-55 218.4 266 49.2
Psat6g168920 Pisum sativum HOM05D003358 ORTHO05D003864 1.2e-54 217.6 261 48.7
CSS0003095 Camellia sinensis var. sinensis HOM05D003358 ORTHO05D003864 1.6e-54 217.2 288 45.1
Medtr1g089940 Medicago truncatula HOM05D003358 ORTHO05D003864 2.1e-54 216.9 270 47.0
Manes.05G072700 Manihot esculenta HOM05D003358 ORTHO05D003864 4.7e-54 215.7 269 48.7
Dinv11261 Davidia involucrata HOM05D003358 ORTHO05D003864 6.2e-54 215.3 267 48.7
Nn1g02094 Nelumbo nucifera HOM05D003358 ORTHO05D003864 8.0e-54 214.9 269 48.0
Cfa006095 Carpinus fangiana HOM05D003358 ORTHO05D003864 1.4e-53 214.2 260 48.5
Nitab4.5_0007767g0030 Nicotiana tabacum HOM05D003358 ORTHO05D003864 1.4e-53 214.2 266 47.0
TPR.G13400 Trifolium pratense HOM05D003358 ORTHO05D003864 1.4e-53 214.2 265 46.8
TAR633G1108 Trochodendron aralioides HOM05D003358 ORTHO05D003864 1.8e-53 213.8 269 48.7
Medtr1g089900 Medicago truncatula HOM05D003358 ORTHO05D003864 3.1e-53 213.0 261 47.5
RcHm_v2.0_Chr6g0291861 Rosa chinensis HOM05D003358 ORTHO05D003864 3.1e-53 213.0 273 46.9
FvH4_2g24080 Fragaria vesca HOM05D003358 ORTHO05D003864 4.0e-53 212.6 273 47.3
FAN15G0418 Fragaria x ananassa HOM05D003358 ORTHO05D003864 4.0e-53 212.6 273 47.3
FAN24G0501 Fragaria x ananassa HOM05D003358 ORTHO05D003864 4.0e-53 212.6 273 47.3
Sabra14G0104100 Salix brachista HOM05D003358 ORTHO05D003864 4.0e-53 212.6 267 47.2
FAN20G3017 Fragaria x ananassa HOM05D003358 ORTHO05D003864 6.8e-53 211.8 273 47.3
Potri.014G138000 Populus trichocarpa HOM05D003358 ORTHO05D003864 8.9e-53 211.5 266 47.4
TWI23G0223 Tripterygium wilfordii HOM05D003358 ORTHO05D003864 8.9e-53 211.5 266 46.6
MELO3C015867.2 Cucumis melo HOM05D003358 ORTHO05D003864 1.2e-52 211.1 267 46.8
MD03G1270200 Malus domestica HOM05D003358 ORTHO05D003864 1.2e-52 211.1 268 46.3
Sopen06g035750 Solanum pennellii HOM05D003358 ORTHO05D003864 1.2e-52 211.1 267 45.7
CsaV3_7G028540 Cucumis sativus L. HOM05D003358 ORTHO05D003864 1.5e-52 210.7 267 46.8
Lj1C44G0 Lonicera japonica HOM05D003358 ORTHO05D003864 1.5e-52 210.7 267 46.1
MD11G1291200 Malus domestica HOM05D003358 ORTHO05D003864 2.6e-52 209.9 268 46.6
GSVIVG01011070001 Vitis vinifera HOM05D003358 ORTHO05D003864 2.6e-52 209.9 269 46.5
MSTRG.21581 Avicennia marina HOM05D003358 ORTHO05D003864 4.4e-52 209.1 266 47.0
AUR62036783 Chenopodium quinoa HOM05D003358 ORTHO05D003864 4.4e-52 209.1 269 46.5
Peaxi162Scf00783g00337 Petunia axillaris HOM05D003358 ORTHO05D003864 4.4e-52 209.1 272 46.3
CAN.G1682.13 Capsicum annuum HOM05D003358 ORTHO05D003864 5.8e-52 208.8 272 45.6
AUR62033697 Chenopodium quinoa HOM05D003358 ORTHO05D003864 5.8e-52 208.8 269 46.5
Cc01_g19840 Coffea canephora HOM05D003358 ORTHO05D003864 5.8e-52 208.8 267 46.8
Eucgr.H01525 Eucalyptus grandis HOM05D003358 ORTHO05D003864 5.8e-52 208.8 267 46.1
Hma1.2p1_0257F.1_g103860 Hydrangea macrophylla HOM05D003358 ORTHO05D003864 7.5e-52 208.4 267 46.8
ClCG09G006810 Citrullus lanatus HOM05D003358 ORTHO05D003864 9.8e-52 208.0 267 46.4
Solyc06g084360.4 Solanum lycopersicum HOM05D003358 ORTHO05D003864 9.8e-52 208.0 267 45.3
EL10Ac7g17196 Beta vulgaris HOM05D003358 ORTHO05D003864 1.3e-51 207.6 269 46.1
CDE05G1806 Ceratophyllum demersum HOM05D003358 ORTHO05D003864 1.3e-51 207.6 265 46.0
CDE07G0407 Ceratophyllum demersum HOM05D003358 ORTHO05D003864 1.7e-51 207.2 265 45.3
CANSAT25G0133 Cannabis sativa HOM05D003358 ORTHO05D003864 2.2e-51 206.8 268 46.6
CSS0018318 Camellia sinensis var. sinensis HOM05D003358 ORTHO05D003864 2.9e-51 206.5 272 46.0
PSO170G4489 Papaver somniferum HOM05D003358 ORTHO05D003864 2.9e-51 206.5 267 46.8
PSO407G0137 Papaver somniferum HOM05D003358 ORTHO05D003864 2.9e-51 206.5 267 46.8
PGSC0003DMG402020120 Solanum tuberosum HOM05D003358 ORTHO05D003864 2.9e-51 206.5 272 45.2
Ah.08g212910 Amaranthus hybridus HOM05D003358 ORTHO05D003864 6.4e-51 205.3 269 46.1
Oeu001439.1 Olea europaea HOM05D003358 ORTHO05D003864 1.9e-50 203.8 266 46.6
HPP92_000042 Vanilla planifolia HOM05D003358 ORTHO05D003864 1.9e-50 203.8 261 44.4
Gohir.A08G044700 Gossypium hirsutum HOM05D003358 ORTHO05D003864 2.4e-50 203.4 266 45.9
Gohir.D08G054400 Gossypium hirsutum HOM05D003358 ORTHO05D003864 2.4e-50 203.4 266 45.9
Gorai.004G054800 Gossypium raimondii HOM05D003358 ORTHO05D003864 2.4e-50 203.4 266 45.9
Thecc.01G284800 Theobroma cacao HOM05D003358 ORTHO05D003864 2.4e-50 203.4 266 45.9
Gohir.A11G120000 Gossypium hirsutum HOM05D003358 ORTHO05D003864 4.1e-50 202.6 272 44.1
Sc17g0003900 Simmondsia chinensis HOM05D003358 ORTHO05D003864 4.1e-50 202.6 269 45.0
TPR.G13299 Trifolium pratense HOM05D003358 ORTHO05D003864 4.1e-50 202.6 265 45.7
Migut.D00256 Erythranthe guttata HOM05D003358 ORTHO05D003864 5.4e-50 202.2 266 46.2
SalBow4G3039 Salvia bowleyana HOM05D003358 ORTHO05D003864 9.2e-50 201.4 266 45.9
Sed0023278 Sechium edule HOM05D003358 ORTHO05D003864 9.2e-50 201.4 268 45.5
ECA247G2569 Erigeron canadensis HOM05D003358 ORTHO05D003864 1.2e-49 201.1 267 44.6
HanXRQChr10g0282971 Helianthus annuus HOM05D003358 ORTHO05D003864 1.6e-49 200.7 267 45.3
Aa31LG1G29500 Aethionema arabicum HOM05D003358 ORTHO05D003864 7.8e-49 198.4 266 44.0
ATR0626G053 Amborella trichopoda HOM05D003358 ORTHO05D003864 7.8e-49 198.4 267 43.8
Rhsim01G0276900 Rhododendron simsii HOM05D003358 ORTHO05D003864 1.0e-48 198.0 269 44.2
CARHR047070 Cardamine hirsuta HOM05D003358 ORTHO05D003864 1.3e-48 197.6 266 43.6
Actinidia24873 Actinidia chinensis HOM05D003358 ORTHO05D003864 3.0e-48 196.4 273 44.0
BcaB07g31539 Brassica carinata HOM05D003358 ORTHO05D003864 3.0e-48 196.4 277 42.2
Os07g0647800 Oryza sativa ssp. japonica HOM05D003358 ORTHO05D003864 3.0e-48 196.4 276 43.1
BolC9t54582H Brassica oleracea HOM05D003358 ORTHO05D003864 5.1e-48 195.7 277 42.2
BcaC04g22672 Brassica carinata HOM05D003358 ORTHO05D003864 6.6e-48 195.3 277 42.2
C09p16810 Brassica napus HOM05D003358 ORTHO05D003864 6.6e-48 195.3 277 42.2
Thhalv10008106m.g Eutrema salsugineum HOM05D003358 ORTHO05D003864 6.6e-48 195.3 267 43.1
Lsat_1_v5_gn_9_4540 Lactuca sativa HOM05D003358 ORTHO05D003864 6.6e-48 195.3 271 43.5
A09p13990 Brassica napus HOM05D003358 ORTHO05D003864 8.6e-48 194.9 277 41.9
BraA09t37046Z Brassica rapa HOM05D003358 ORTHO05D003864 8.6e-48 194.9 277 41.9
AL2G11230 Arabidopsis lyrata HOM05D003358 ORTHO05D003864 1.1e-47 194.5 266 43.2
Medtr1g089960 Medicago truncatula HOM05D003358 ORTHO05D003864 1.5e-47 194.1 299 42.1
Sp2g00790 Schrenkiella parvula HOM05D003358 ORTHO05D003864 1.5e-47 194.1 267 43.1
Hund05356 Selenicereus undatus HOM05D003358 ORTHO05D003864 1.9e-47 193.7 269 44.6
Carub.0002s0094 Capsella rubella HOM05D003358 ORTHO05D003864 2.5e-47 193.4 266 43.2
Nn4g26144 Nelumbo nucifera HOM05D003358 ORTHO05D003864 2.5e-47 193.4 269 45.0
DCAR_012453 Daucus carota HOM05D003358 ORTHO05D003864 9.5e-47 191.4 254 43.7
Actinidia00727 Actinidia chinensis HOM05D003358 ORTHO05D003864 2.1e-46 190.3 267 43.8
SEGI_02468 Sequoiadendron giganteum HOM05D003358 ORTHO05D003864 4.7e-46 189.1 276 41.3
AT1G63900 Arabidopsis thaliana HOM05D003358 ORTHO05D003864 1.1e-45 188.0 266 42.5
CAN.G1682.14 Capsicum annuum HOM05D003358 ORTHO05D003864 1.8e-45 187.2 250 44.8
Zm00001eb110530 Zea mays HOM05D003358 ORTHO05D003864 1.8e-45 187.2 276 40.9
MBI17_g17897_MAGBIO Magnolia biondii HOM05D003358 ORTHO05D003864 2.3e-45 186.8 272 44.9
unitig_0.g80 Utricularia gibba HOM05D003358 ORTHO05D003864 2.3e-45 186.8 271 42.4
Medtr1g089910 Medicago truncatula HOM05D003358 ORTHO05D003864 8.9e-45 184.9 287 42.9
SMO116G0196 Selaginella moellendorffii HOM05D003358 ORTHO05D003864 2.6e-44 183.3 275 39.3
Mapoly0009s0167 Marchantia polymorpha HOM05D003358 ORTHO05D003864 3.4e-44 183.0 278 40.6
THA.LOC104823098 Tarenaya hassleriana HOM05D003358 ORTHO05D003864 2.2e-43 180.3 246 44.7
vmacro02543 Vaccinium macrocarpon HOM05D003358 ORTHO05D003864 2.2e-43 180.3 269 43.1
vmacro14942 Vaccinium macrocarpon HOM05D003358 ORTHO05D003864 2.2e-43 180.3 284 39.8
Nitab4.5_0002093g0030 Nicotiana tabacum HOM05D003358 ORTHO05D003864 2.9e-43 179.9 335 36.7
Sed0022837 Sechium edule HOM05D003358 ORTHO05D003864 2.9e-43 179.9 227 46.7
Duzib211G0202 Durio zibethinus HOM05D003358 ORTHO05D003864 8.3e-43 178.3 272 41.9
Thhalv10024073m.g Eutrema salsugineum HOM05D003358 ORTHO05D003864 8.3e-43 178.3 266 41.4
Pp3c19_9460 Physcomitrium patens HOM05D003358 ORTHO05D003864 8.3e-43 178.3 278 39.6
Pp3c22_7850 Physcomitrium patens HOM05D003358 ORTHO05D003864 1.6e-41 174.1 278 38.1
SGA_v2.0_scaffold1G00442 Striga asiatica HOM05D003358 ORTHO05D003864 2.7e-41 173.3 266 42.9
TPR.G13403 Trifolium pratense HOM05D003358 ORTHO05D003864 1.7e-40 170.6 240 47.1
AagrBONN_evm.TU.Sc2ySwM_368.2570 Anthoceros agrestis HOM05D003358 ORTHO05D003864 2.3e-40 170.2 277 38.3
Duzib138G0559 Durio zibethinus HOM05D003358 ORTHO05D003864 1.1e-39 167.9 272 39.3
Zm00001eb329440 Zea mays HOM05D003358 ORTHO05D003864 1.9e-39 167.2 276 39.9
Aa31LG10G16880 Aethionema arabicum HOM05D003358 ORTHO05D003864 1.2e-38 164.5 272 38.2
Medtr7g094290 Medicago truncatula HOM05D003358 ORTHO05D003864 4.7e-38 162.5 267 40.1
Cpa.g.sc9.121 Carica papaya HOM05D003358 ORTHO05D003864 6.2e-38 162.2 267 41.9
BcaC02g10340 Brassica carinata HOM05D003358 ORTHO05D003864 3.4e-36 156.4 263 35.7
A04p00330 Brassica napus HOM05D003358 ORTHO05D003864 9.9e-36 154.8 267 36.3
MD11G1291000 Malus domestica HOM05D003358 ORTHO05D003864 1.3e-35 154.5 247 38.5
C04p30150 Brassica napus HOM05D003358 ORTHO05D003864 3.8e-35 152.9 267 35.6
Gorai.007G133700 Gossypium raimondii HOM05D003358 ORTHO05D003864 1.1e-34 151.4 286 36.7
BraA04t15751Z Brassica rapa HOM05D003358 ORTHO05D003864 1.9e-34 150.6 264 35.6
Rhsim13G0022000 Rhododendron simsii HOM05D003358 ORTHO05D003864 1.9e-34 150.6 265 40.0
BolC4t24547H Brassica oleracea HOM05D003358 ORTHO05D003864 2.4e-34 150.2 270 35.9
Migut.N02149 Erythranthe guttata HOM05D003358 ORTHO05D003864 7.8e-33 145.2 275 37.8
FAN27G2094 Fragaria x ananassa HOM05D003358 ORTHO05D003864 2.3e-32 143.7 145 54.5
CSS0028362 Camellia sinensis var. sinensis HOM05D003358 ORTHO05D003864 5.1e-32 142.5 211 43.1
Migut.N02147 Erythranthe guttata HOM05D003358 ORTHO05D003864 7.3e-31 138.7 276 38.0
TAR362G0768 Trochodendron aralioides HOM05D003358 ORTHO05D003864 9.6e-31 138.3 140 52.9
AT1G59560 Arabidopsis thaliana HOM05D003358 ORTHO05D003864 1.6e-30 137.5 263 33.8
Prupe.8G246200 Prunus persica HOM05D003358 ORTHO05D003864 2.1e-30 137.1 221 41.6
Gohir.D11G124766 Gossypium hirsutum HOM05D003358 ORTHO05D003864 1.8e-29 134.0 211 41.2
Prupe.8G246300 Prunus persica HOM05D003358 ORTHO05D003864 7.6e-28 128.6 259 37.8
TPR.G32824 Trifolium pratense HOM05D003358 ORTHO05D003864 1.9e-26 124.0 255 33.7
Migut.N02146 Erythranthe guttata HOM05D003358 ORTHO05D003864 9.3e-26 121.7 256 36.3
Carub.0002s0588 Capsella rubella HOM05D003358 ORTHO05D003864 4.3e-23 112.8 140 43.6
BcaC07g42712 Brassica carinata HOM05D003358 ORTHO05D003864 9.6e-23 111.7 230 33.9
A09p54880 Brassica napus HOM05D003358 ORTHO05D003864 6.2e-22 109.0 251 30.3
Atru.chr9.1958 Acer truncatum HOM05D003358 ORTHO05D003864 1.4e-21 107.8 215 35.8
Atru.chr5.1347 Acer truncatum HOM05D003358 ORTHO05D003864 6.9e-21 105.5 83 62.7
Aqoxy2G03211 Aquilegia oxysepala HOM05D003358 ORTHO05D003864 9.0e-21 105.1 251 34.7
TPR.G36026 Trifolium pratense HOM05D003358 ORTHO05D003864 4.9e-19 99.4 126 43.7
Oeu011175.1 Olea europaea HOM05D000273 ORTHO05D000198 1.4e-18 97.8 190 37.4
AL1G26420 Arabidopsis lyrata HOM05D003358 ORTHO05D003864 6.7e-16 89.0 262 31.3
Sp5g00470 Schrenkiella parvula HOM05D003358 ORTHO05D003864 8.7e-16 88.6 270 28.5
Aqoxy4G02508 Aquilegia oxysepala HOM05D003358 ORTHO05D003864 2.1e-14 84.0 152 33.6
Migut.N02166 Erythranthe guttata HOM05D003358 ORTHO05D003864 2.1e-14 84.0 175 36.0
Atru.chr5.1348 Acer truncatum HOM05D003358 ORTHO05D003864 3.4e-12 76.6 113 42.5
Carub.0001s1424 Capsella rubella HOM05D003358 ORTHO05D003864 3.4e-12 76.6 278 28.8
C03p05670 Brassica napus HOM05D003358 ORTHO05D003864 5.8e-12 75.9 273 28.2
BolC3t13079H Brassica oleracea HOM05D003358 ORTHO05D003864 5.8e-12 75.9 273 28.2
Psat6g168880 Pisum sativum HOM05D003358 ORTHO05D003864 5.8e-12 75.9 101 45.5
AL1G26440 Arabidopsis lyrata HOM05D003358 ORTHO05D003864 2.2e-11 73.9 240 27.5
BcaB01g06302 Brassica carinata HOM05D003358 ORTHO05D003864 1.9e-10 70.9 266 25.9
AL5G45870 Arabidopsis lyrata HOM05D003358 ORTHO05D003864 3.2e-10 70.1 205 30.7
BcaC07g42715 Brassica carinata HOM05D003358 ORTHO05D003864 5.5e-10 69.3 82 42.7
BolC8t51358H Brassica oleracea HOM05D003358 ORTHO05D003864 1.2e-09 68.2 86 44.2
C03p05710 Brassica napus HOM05D003358 ORTHO05D003864 1.6e-09 67.8 226 27.4
Carub.0005s1267 Capsella rubella HOM05D003358 ORTHO05D003864 2.1e-09 67.4 140 32.1
THA.LOC104820691 Tarenaya hassleriana HOM05D003358 ORTHO05D003864 2.7e-09 67.0 138 31.2
BraA03t09834Z Brassica rapa HOM05D003358 ORTHO05D003864 6.0e-09 65.9 165 29.7
DCAR_018399 Daucus carota HOM05D000027 ORTHO05D003864 2.3e-08 63.9 252 27.0
Lj2C1179T8 Lonicera japonica HOM05D003358 ORTHO05D003864 2.3e-08 63.9 165 32.7
C03p05700 Brassica napus HOM05D011503 ORTHO05D013743 5.1e-08 62.8 279 25.8
BolC3t13082H Brassica oleracea HOM05D011503 ORTHO05D013743 5.1e-08 62.8 279 25.8
BcaB01g05487 Brassica carinata HOM05D011503 ORTHO05D003864 1.5e-07 61.2 139 31.7
BcaB01g05486 Brassica carinata HOM05D026960 ORTHO05D031882 9.6e-07 58.5 200 32.0
BolC3t13084H Brassica oleracea HOM05D003358 ORTHO05D003864 2.1e-06 57.4 185 28.6
A03p04950 Brassica napus HOM05D011503 ORTHO05D013743 4.8e-06 56.2 279 22.9
BraA03t09833Z Brassica rapa HOM05D011503 ORTHO05D013743 4.8e-06 56.2 279 22.9


User provided reference genes

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