Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g086585 Medicago truncatula HOM05D007717 ORTHO05D009694 2.6e-141 505.4 252 100.0
TPR.G31750 Trifolium pratense HOM05D004146 ORTHO05D004843 8.3e-124 447.2 255 87.5
Psat6g160600 Pisum sativum HOM05D007717 ORTHO05D009694 1.4e-110 403.3 228 86.8
Lj5g0017185 Lotus japonicus HOM05D007717 ORTHO05D009694 1.8e-102 376.3 252 75.4
Glyma.02G010200 Glycine max HOM05D007717 ORTHO05D009694 2.4e-102 375.9 254 73.6
Lalb_Chr06g0167011 Lupinus albus HOM05D007717 ORTHO05D009694 1.0e-97 360.5 252 73.0
Phvul.007G212300 Phaseolus vulgaris HOM05D007717 ORTHO05D009694 2.5e-96 355.9 252 71.0
VMungo0720G1298 Vigna mungo HOM05D007717 ORTHO05D009694 7.4e-96 354.4 254 69.3
arahy.Tifrunner.gnm1.ann1.P1ZICW Arachis hypogaea HOM05D007717 ORTHO05D009694 3.2e-91 339.0 264 66.3
CiPaw.08G086800 Carya illinoinensis HOM05D007717 ORTHO05D009694 8.7e-89 330.9 230 68.3
Haze_17022 Corylus avellana HOM05D007717 ORTHO05D009694 4.0e-86 322.0 227 68.7
Actinidia17924 Actinidia chinensis HOM05D007717 ORTHO05D009694 9.0e-86 320.9 219 66.7
Thecc.01G318800 Theobroma cacao HOM05D007717 ORTHO05D009694 2.6e-85 319.3 236 67.4
FvH4_1g26780 Fragaria vesca HOM05D007717 ORTHO05D009694 7.6e-85 317.8 251 61.4
RcHm_v2.0_Chr3g0487001 Rosa chinensis HOM05D007717 ORTHO05D009694 7.6e-85 317.8 207 71.0
QL12p018825 Quercus lobata HOM05D007717 ORTHO05D009694 1.0e-84 317.4 245 63.7
Cfa001519 Carpinus fangiana HOM05D007717 ORTHO05D009694 1.7e-84 316.6 223 69.5
Duzib138G0230 Durio zibethinus HOM05D007717 ORTHO05D009694 1.7e-84 316.6 215 68.8
Hma1.2p1_0408F.1_g146470 Hydrangea macrophylla HOM05D007717 ORTHO05D009694 1.7e-84 316.6 212 67.9
GSVIVG01028159001 Vitis vinifera HOM05D007717 ORTHO05D009694 1.7e-84 316.6 210 69.5
FAN19G0412 Fragaria x ananassa HOM05D007717 ORTHO05D009694 8.4e-84 314.3 253 61.3
TAR362G0991 Trochodendron aralioides HOM05D007717 ORTHO05D009694 8.4e-84 314.3 244 63.1
Manes.05G012500 Manihot esculenta HOM05D007717 ORTHO05D009694 1.9e-83 313.2 247 62.8
Atru.chr5.944 Acer truncatum HOM05D007717 ORTHO05D009694 2.5e-83 312.8 250 62.8
Potri.014G117500 Populus trichocarpa HOM05D007717 ORTHO05D009694 2.5e-83 312.8 242 64.0
EL10As5g23606 Beta vulgaris HOM05D007717 ORTHO05D009694 4.2e-83 312.0 218 67.9
Sp6g01810 Schrenkiella parvula HOM05D007717 ORTHO05D009694 1.6e-82 310.1 214 70.6
Prupe.3G006900 Prunus persica HOM05D007717 ORTHO05D009694 4.6e-82 308.5 259 61.0
CSS0048227 Camellia sinensis var. sinensis HOM05D007717 ORTHO05D009694 7.9e-82 307.8 253 59.3
CsaV3_3G026540 Cucumis sativus L. HOM05D007717 ORTHO05D009694 3.0e-81 305.8 254 58.3
A07p34270 Brassica napus HOM05D007717 ORTHO05D009694 2.5e-80 302.8 204 70.6
C06p42310 Brassica napus HOM05D007717 ORTHO05D009694 3.3e-80 302.4 217 67.3
Gohir.D07G134000 Gossypium hirsutum HOM05D007717 ORTHO05D009694 4.3e-80 302.0 215 65.6
Gorai.001G145600 Gossypium raimondii HOM05D007717 ORTHO05D009694 4.3e-80 302.0 215 65.6
BraA07t31055Z Brassica rapa HOM05D007717 ORTHO05D009694 5.7e-80 301.6 204 70.6
MD09G1286700 Malus domestica HOM05D007717 ORTHO05D009694 5.7e-80 301.6 212 66.5
ClCG10G011620 Citrullus lanatus HOM05D007717 ORTHO05D009694 7.4e-80 301.2 236 61.9
TWI14G0584 Tripterygium wilfordii HOM05D007717 ORTHO05D009694 7.4e-80 301.2 242 61.6
BolC6t39198H Brassica oleracea HOM05D007717 ORTHO05D009694 1.3e-79 300.4 213 66.2
Ciclev10021685m.g Citrus clementina HOM05D007717 ORTHO05D009694 1.3e-79 300.4 254 59.1
AT4G01935 Arabidopsis thaliana HOM05D007717 ORTHO05D009694 1.6e-79 300.1 213 69.0
Rhsim13G0002400 Rhododendron simsii HOM05D007717 ORTHO05D009694 1.6e-79 300.1 201 67.2
Carub.0006s3530 Capsella rubella HOM05D007717 ORTHO05D009694 2.8e-79 299.3 254 60.2
Thhalv10028874m.g Eutrema salsugineum HOM05D007717 ORTHO05D009694 8.2e-79 297.7 252 60.7
PSO210G2166 Papaver somniferum HOM05D007717 ORTHO05D009694 8.2e-79 297.7 239 60.3
MELO3C012927.2 Cucumis melo HOM05D007717 ORTHO05D009694 9.0e-78 294.3 260 57.7
AUR62024600 Chenopodium quinoa HOM05D007717 ORTHO05D009694 1.2e-77 293.9 218 61.0
Eucgr.K03559 Eucalyptus grandis HOM05D007717 ORTHO05D009694 1.2e-77 293.9 205 70.2
THA.LOC104825934 Tarenaya hassleriana HOM05D007717 ORTHO05D009694 2.0e-77 293.1 214 66.8
ATR0693G230 Amborella trichopoda HOM05D007717 ORTHO05D009694 1.7e-76 290.0 229 61.6
ECA236G3512 Erigeron canadensis HOM05D007717 ORTHO05D009694 2.2e-76 289.7 227 62.1
Oeu038956.1 Olea europaea HOM05D007717 ORTHO05D009694 2.9e-76 289.3 248 58.5
Sed0016465 Sechium edule HOM05D007717 ORTHO05D009694 3.8e-76 288.9 213 63.4
Migut.N00924 Erythranthe guttata HOM05D007717 ORTHO05D009694 1.4e-75 287.0 212 65.1
HanXRQChr04g0106271 Helianthus annuus HOM05D007717 ORTHO05D009694 2.5e-75 286.2 201 66.2
Aa31LG5G1580 Aethionema arabicum HOM05D007717 ORTHO05D009694 3.0e-73 279.3 211 64.0
Nitab4.5_0004006g0040 Nicotiana tabacum HOM05D007717 ORTHO05D009694 3.0e-73 279.3 226 60.2
SalBow2G0697 Salvia bowleyana HOM05D007717 ORTHO05D009694 5.1e-73 278.5 212 62.3
unitig_748.g7768 Utricularia gibba HOM05D007717 ORTHO05D009694 5.1e-73 278.5 224 61.2
MSTRG.15592 Avicennia marina HOM05D007717 ORTHO05D009694 1.5e-72 276.9 190 67.9
Sabra14G0087200 Salix brachista HOM05D007717 ORTHO05D009694 2.5e-72 276.2 216 63.9
Aqoxy2G02636 Aquilegia oxysepala HOM05D007717 ORTHO05D009694 3.3e-72 275.8 191 65.4
Nitab4.5_0002828g0050 Nicotiana tabacum HOM05D007717 ORTHO05D009694 4.3e-72 275.4 213 61.0
SGA_v2.0_scaffold198G41108 Striga asiatica HOM05D007717 ORTHO05D009694 8.2e-71 271.2 195 63.6
Cc01_g21670 Coffea canephora HOM05D007717 ORTHO05D009694 3.1e-70 269.2 201 64.2
COL.COLO4_23187 Corchorus olitorius HOM05D004146 ORTHO05D004843 2.6e-69 266.2 186 67.7
CAN.G1209.17 Capsicum annuum HOM05D007717 ORTHO05D009694 3.8e-68 262.3 209 60.8
PGR044G1932 Punica granatum HOM05D007717 ORTHO05D009694 1.6e-66 256.9 190 64.7
BcaB04g18936 Brassica carinata HOM05D007717 ORTHO05D009694 2.1e-66 256.5 225 59.1
Lj2C1210T5 Lonicera japonica HOM05D007717 ORTHO05D009694 3.6e-66 255.8 228 57.5
Os01g0252600 Oryza sativa ssp. japonica HOM05D007717 ORTHO05D009694 2.0e-64 250.0 199 58.3
Zm00001eb127510 Zea mays HOM05D007717 ORTHO05D009694 1.1e-62 244.2 210 56.2
Nn3g21819 Nelumbo nucifera HOM05D007717 ORTHO05D009694 1.8e-57 226.9 163 66.9
Mapoly0015s0128 Marchantia polymorpha HOM05D007717 ORTHO05D009694 1.1e-56 224.2 192 55.2
AagrBONN_evm.TU.Sc2ySwM_344.3558 Anthoceros agrestis HOM05D007717 ORTHO05D009694 1.5e-56 223.8 203 54.7
Ah.11g049130 Amaranthus hybridus HOM05D007717 ORTHO05D009694 1.3e-55 220.7 217 49.8
Pp3c5_22240 Physcomitrium patens HOM05D007717 ORTHO05D009694 4.1e-54 215.7 195 54.9
arahy.Tifrunner.gnm1.ann1.259I69 Arachis hypogaea HOM05D007717 ORTHO05D009694 3.8e-52 209.1 264 47.3
AUR62011755 Chenopodium quinoa HOM05D004146 ORTHO05D004843 1.5e-51 207.2 159 61.0
Hund02948 Selenicereus undatus HOM05D007717 ORTHO05D009694 9.4e-51 204.5 169 62.7
SMO117G0327 Selaginella moellendorffii HOM05D007717 ORTHO05D009694 1.4e-49 200.7 198 50.0
MBI18_g27382_MAGBIO Magnolia biondii HOM05D007717 ORTHO05D009694 1.1e-46 191.0 242 45.9
Dinv00087 Davidia involucrata HOM05D007717 ORTHO05D009694 7.0e-46 188.3 149 60.4
Gohir.A07G129700 Gossypium hirsutum HOM05D007717 ORTHO05D009694 6.5e-44 181.8 132 65.9
BcaC08g46194 Brassica carinata HOM05D007717 ORTHO05D009694 1.1e-38 164.5 96 75.0
vmacro02381 Vaccinium macrocarpon HOM05D007717 ORTHO05D009694 2.8e-34 149.8 121 61.2
Actinidia37701 Actinidia chinensis HOM05D007717 ORTHO05D009694 4.7e-34 149.1 172 47.1
Cpa.g.sc18.99 Carica papaya HOM05D007717 ORTHO05D009694 2.2e-31 140.2 115 62.6
FAN28G2335 Fragaria x ananassa HOM05D007717 ORTHO05D009694 3.2e-30 136.3 99 59.6
FAN23G2736 Fragaria x ananassa HOM05D007717 ORTHO05D009694 4.1e-30 136.0 79 78.5
BcaC08g46195 Brassica carinata HOM05D007717 ORTHO05D009694 5.9e-29 132.1 101 66.3
Sc17g0000260 Simmondsia chinensis HOM05D007717 ORTHO05D009694 9.5e-27 124.8 141 48.9
Cre17.g729900 Chlamydomonas reinhardtii HOM05D007717 ORTHO05D009694 2.4e-22 110.2 195 34.4
CARHR249750 Cardamine hirsuta HOM05D007717 ORTHO05D009694 2.6e-16 90.1 59 72.9
CBR_g40482 Chara braunii HOM05D001161 ORTHO05D000497 1.9e-11 73.9 92 40.2


User provided reference genes

Program Settings