Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g075280 Medicago truncatula HOM05D005259 ORTHO05D006402 0.0e+00 1097.8 562 100.0
TPR.G27199 Trifolium pratense HOM05D005259 ORTHO05D006402 1.2e-186 657.1 636 62.7
Ca_09836_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 1.3e-161 573.9 669 53.2
Psat4g092760 Pisum sativum HOM05D005259 ORTHO05D006402 9.2e-131 471.5 568 53.9
Glyma.10G185100 Glycine max HOM05D005259 ORTHO05D006402 3.3e-128 463.0 774 43.9
Lj5g0013708 Lotus japonicus HOM05D005259 ORTHO05D006402 1.0e-121 441.4 727 44.3
VMungo0720G1316 Vigna mungo HOM05D005259 ORTHO05D006402 2.1e-103 380.6 750 39.2
Phvul.007G125900 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 1.1e-91 341.7 731 37.6
Glyma.01G234600 Glycine max HOM05D005259 ORTHO05D006402 8.2e-87 325.5 517 43.1
Glyma.11G008300 Glycine max HOM05D005259 ORTHO05D006402 4.1e-86 323.2 506 43.1
Lalb_Chr02g0150411 Lupinus albus HOM05D005259 ORTHO05D006402 7.4e-72 275.8 737 33.6
VMungo1215G2763 Vigna mungo HOM05D005259 ORTHO05D006402 2.2e-71 274.2 517 39.1
arahy.Tifrunner.gnm1.ann1.SM0BS0 Arachis hypogaea HOM05D005259 ORTHO05D006402 4.1e-70 270.0 503 41.4
Phvul.002G042000 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 5.9e-69 266.2 666 34.2
Lalb_Chr06g0169311 Lupinus albus HOM05D005259 ORTHO05D006402 1.1e-62 245.4 517 39.7
LjContig00222g0005017 Lotus japonicus HOM05D005259 ORTHO05D006402 2.0e-61 241.1 515 37.3
Lalb_Chr09g0320051 Lupinus albus HOM05D005259 ORTHO05D006402 9.7e-56 222.2 506 37.7
Ca_24427_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 2.5e-51 207.6 524 37.6
arahy.Tifrunner.gnm1.ann1.7CP98C Arachis hypogaea HOM05D005259 ORTHO05D006402 9.8e-48 195.7 307 44.0
TPR.G37888 Trifolium pratense HOM05D005259 ORTHO05D006402 4.8e-47 193.4 572 33.9
arahy.Tifrunner.gnm1.ann1.TEF2FC Arachis hypogaea HOM05D005259 ORTHO05D006402 5.2e-41 173.3 646 29.3
arahy.Tifrunner.gnm1.ann1.YIX0R7 Arachis hypogaea HOM05D005259 ORTHO05D006402 1.3e-39 168.7 646 29.1
Atru.chr4.2229 Acer truncatum HOM05D005259 ORTHO05D006402 4.9e-39 166.8 518 32.4
Medtr5g007040 Medicago truncatula HOM05D005259 ORTHO05D006402 1.1e-38 165.6 513 29.4
QL06p015741 Quercus lobata HOM05D005259 ORTHO05D006402 4.1e-38 163.7 525 31.6
Cfa008379 Carpinus fangiana HOM05D005259 ORTHO05D006402 4.7e-34 150.2 600 28.2
Glyma.20G205301 Glycine max HOM05D005259 ORTHO05D006402 4.7e-34 150.2 185 49.7
GSVIVG01018119001 Vitis vinifera HOM05D005259 ORTHO05D006402 4.7e-34 150.2 703 28.0
CSS0043582 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 4.0e-33 147.1 556 29.0
CSS0027429 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 2.6e-32 144.4 564 29.4
Cpa.g.sc58.48 Carica papaya HOM05D005259 ORTHO05D006402 2.6e-32 144.4 505 27.1
Ciclev10004215m.g Citrus clementina HOM05D005259 ORTHO05D006402 4.4e-32 143.7 509 29.9
Hma1.2p1_0650F.1_g195420 Hydrangea macrophylla HOM05D005259 ORTHO05D006402 2.2e-31 141.4 497 29.4
Duzib151G0402 Durio zibethinus HOM05D005259 ORTHO05D006402 4.1e-30 137.1 533 29.5
Prupe.1G030800 Prunus persica HOM05D005259 ORTHO05D006402 4.1e-30 137.1 523 29.8
Thecc.04G246200 Theobroma cacao HOM05D005259 ORTHO05D006402 4.1e-30 137.1 537 29.2
Psat2g189680 Pisum sativum HOM05D005259 ORTHO05D006402 7.0e-30 136.3 512 29.7
Duzib052G0218 Durio zibethinus HOM05D005259 ORTHO05D006402 2.0e-29 134.8 528 29.5
CiPaw.02G116300 Carya illinoinensis HOM05D005259 ORTHO05D006402 4.6e-29 133.7 476 29.6
TAR633G1135 Trochodendron aralioides HOM05D005259 ORTHO05D006402 5.9e-29 133.3 557 27.6
Medtr6g046940 Medicago truncatula HOM05D005259 ORTHO05D006402 1.1e-27 129.0 611 26.2
Duzib212G1015 Durio zibethinus HOM05D005259 ORTHO05D006402 1.9e-27 128.3 532 28.8
Manes.03G168800 Manihot esculenta HOM05D005259 ORTHO05D006402 2.8e-26 124.4 514 27.8
Potri.008G162500 Populus trichocarpa HOM05D005259 ORTHO05D006402 4.7e-26 123.6 502 27.3
TAR362G0225 Trochodendron aralioides HOM05D005259 ORTHO05D006402 4.7e-26 123.6 531 30.5
COL.COLO4_15792 Corchorus olitorius HOM05D005259 ORTHO05D006402 8.0e-26 122.9 529 27.8
MD16G1208700 Malus domestica HOM05D005259 ORTHO05D006402 2.3e-25 121.3 605 27.3
TWI73G0531 Tripterygium wilfordii HOM05D005259 ORTHO05D006402 1.2e-24 119.0 525 28.4
Dinv44635 Davidia involucrata HOM05D005259 ORTHO05D006402 3.2e-22 110.9 522 28.0
FvH4_4g02690 Fragaria vesca HOM05D005259 ORTHO05D006402 1.6e-21 108.6 532 26.9
FAN12G0451 Fragaria x ananassa HOM05D005259 ORTHO05D006402 2.0e-21 108.2 532 26.7
CiPaw.01G190300 Carya illinoinensis HOM05D005259 ORTHO05D001287 3.5e-21 107.5 505 28.1
FAN17G1158 Fragaria x ananassa HOM05D005259 ORTHO05D006402 3.5e-21 107.5 611 25.5
MD13G1207300 Malus domestica HOM05D005259 ORTHO05D006402 7.8e-21 106.3 522 27.4
Potri.010G076700 Populus trichocarpa HOM05D005259 ORTHO05D006402 3.9e-20 104.0 525 25.5
Sabra08G0123900 Salix brachista HOM05D005259 ORTHO05D006402 5.0e-20 103.6 509 27.3
Haze_11300 Corylus avellana HOM05D005259 ORTHO05D006402 7.3e-19 99.8 261 34.1
vmacro08412 Vaccinium macrocarpon HOM05D005259 ORTHO05D006402 9.5e-19 99.4 505 28.3
RcHm_v2.0_Chr4g0390511 Rosa chinensis HOM05D005259 ORTHO05D006402 2.1e-18 98.2 525 25.5
Actinidia04478 Actinidia chinensis HOM05D005259 ORTHO05D002253 4.7e-18 97.1 564 27.1
FAN22G1888 Fragaria x ananassa HOM05D005259 ORTHO05D006402 6.2e-18 96.7 611 24.1
Nn1g02609 Nelumbo nucifera HOM05D005259 ORTHO05D006402 8.1e-18 96.3 477 27.9
Manes.15G037000 Manihot esculenta HOM05D005259 ORTHO05D006402 4.0e-17 94.0 465 26.5
Rhsim04G0190300 Rhododendron simsii HOM05D005259 ORTHO05D006402 5.2e-17 93.6 655 25.2
Actinidia40086 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.5e-16 92.0 434 27.6
ClCG05G004600 Citrullus lanatus HOM05D005259 ORTHO05D006402 1.5e-16 92.0 442 26.2
Sabra10G0032100 Salix brachista HOM05D005259 ORTHO05D006402 2.0e-16 91.7 448 27.2
Sed0017180 Sechium edule HOM05D005259 ORTHO05D006402 7.5e-16 89.7 432 25.2
Sed0002321 Sechium edule HOM05D005259 ORTHO05D006402 9.8e-16 89.4 449 26.3
Cc03_g04860 Coffea canephora HOM05D005259 ORTHO05D006402 2.9e-15 87.8 450 24.9
Glyma.20G205250 Glycine max HOM05D005259 ORTHO05D006402 3.7e-15 87.4 86 58.1
Nitab4.5_0004798g0010 Nicotiana tabacum HOM05D005259 ORTHO05D006402 4.9e-15 87.0 499 25.1
MELO3C006469.2 Cucumis melo HOM05D005259 ORTHO05D006402 3.2e-14 84.3 451 25.9
PSO210G6035 Papaver somniferum HOM05D005259 ORTHO05D006402 7.1e-14 83.2 525 25.0
Oeu049793.2 Olea europaea HOM05D005259 ORTHO05D006402 1.0e-12 79.3 491 25.7
CsaV3_3G012580 Cucumis sativus L. HOM05D005259 ORTHO05D006402 1.3e-12 79.0 447 24.6
CAN.G1007.13 Capsicum annuum HOM05D005259 ORTHO05D006402 1.7e-12 78.6 501 24.4
Sc13g0005040 Simmondsia chinensis HOM05D005259 ORTHO05D006402 1.7e-12 78.6 492 26.2
PSO832G3620 Papaver somniferum HOM05D005259 ORTHO05D006402 3.0e-12 77.8 516 24.2
Sopen09g032310 Solanum pennellii HOM05D005259 ORTHO05D006402 5.1e-12 77.0 482 23.2
Solyc09g083390.3 Solanum lycopersicum HOM05D005259 ORTHO05D006402 1.9e-11 75.1 482 22.8
PGSC0003DMG400001126 Solanum tuberosum HOM05D005259 ORTHO05D006402 5.6e-11 73.6 481 23.7
Gohir.D09G225300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 2.1e-10 71.6 240 31.2
MSTRG.9924 Avicennia marina HOM05D005259 ORTHO05D006402 3.6e-10 70.9 496 26.4
Gorai.006G246800 Gossypium raimondii HOM05D005259 ORTHO05D006402 6.2e-10 70.1 240 30.8
Peaxi162Scf00813g00016 Petunia axillaris HOM05D005259 ORTHO05D006402 8.1e-10 69.7 492 25.4
MBI04_g45851_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 1.1e-09 69.3 80 45.0
Gohir.A09G223300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 8.9e-09 66.2 215 29.3
MBI04_g07579_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 1.2e-08 65.9 550 22.5
Nitab4.5_0000525g0240 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.5e-08 65.5 457 23.6
Migut.G00437 Erythranthe guttata HOM05D005259 ORTHO05D006402 2.6e-08 64.7 441 23.8
Lj6A656T72 Lonicera japonica HOM05D005259 ORTHO05D006402 2.6e-08 64.7 178 30.3
Nn3g19539 Nelumbo nucifera HOM05D005259 ORTHO05D006402 3.4e-08 64.3 505 25.5
MSTRG.24702 Avicennia marina HOM05D005259 ORTHO05D006402 5.8e-08 63.5 512 24.6
Actinidia08442 Actinidia chinensis HOM05D005259 ORTHO05D006402 3.2e-06 57.8 343 25.4
ATR0665G554 Amborella trichopoda HOM05D005259 ORTHO05D006402 4.1e-06 57.4 60 43.3
BraA06t27646Z Brassica rapa HOM05D005259 ORTHO05D006402 4.1e-06 57.4 588 23.0
BcaC06g34639 Brassica carinata HOM05D005259 ORTHO05D006402 9.2e-06 56.2 298 26.2


User provided reference genes

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