Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g073920 Medicago truncatula HOM05D006440 ORTHO05D003987 0.0e+00 1206.0 593 100.0
Ca_09816_v3 Cicer arietinum L. HOM05D006440 ORTHO05D003987 0.0e+00 1093.2 595 89.6
Lalb_Chr02g0150571 Lupinus albus HOM05D006440 ORTHO05D003987 4.3e-304 1047.3 595 85.5
Lj5g0005322 Lotus japonicus HOM05D006440 ORTHO05D003987 2.2e-300 1035.0 596 85.2
Phvul.007G129000 Phaseolus vulgaris HOM05D006440 ORTHO05D003987 2.4e-286 988.4 595 81.5
VMungo0720G1034 Vigna mungo HOM05D006440 ORTHO05D003987 5.3e-286 987.3 595 81.5
Glyma.10G188100 Glycine max HOM05D006440 ORTHO05D003987 9.0e-286 986.5 595 80.8
Glyma.20G202700 Glycine max HOM05D006440 ORTHO05D003987 2.6e-285 984.9 594 81.3
arahy.Tifrunner.gnm1.ann1.WJ3SQN Arachis hypogaea HOM05D006440 ORTHO05D003987 7.6e-285 983.4 583 82.0
arahy.Tifrunner.gnm1.ann1.A0C0SS Arachis hypogaea HOM05D006440 ORTHO05D003987 7.4e-280 966.8 594 80.1
QL06p016694 Quercus lobata HOM05D006440 ORTHO05D003987 5.5e-275 950.7 594 76.9
Psat6g132960 Pisum sativum HOM05D006440 ORTHO05D003987 1.8e-273 945.7 595 79.7
Ciclev10004596m.g Citrus clementina HOM05D006440 ORTHO05D003987 1.5e-272 942.6 596 75.7
CiPaw.02G114500 Carya illinoinensis HOM05D006440 ORTHO05D003987 2.4e-270 935.3 595 75.5
GSVIVG01027730001 Vitis vinifera HOM05D006440 ORTHO05D003987 3.8e-268 927.9 598 75.1
Manes.03G166900 Manihot esculenta HOM05D006440 ORTHO05D003987 1.1e-267 926.4 597 75.2
Eucgr.H03137 Eucalyptus grandis HOM05D006440 ORTHO05D003987 2.5e-267 925.2 596 74.7
CsaV3_3G012320 Cucumis sativus L. HOM05D006440 ORTHO05D003987 7.2e-267 923.7 595 75.1
Duzib212G0326 Durio zibethinus HOM05D006440 ORTHO05D003987 2.7e-266 921.8 595 75.1
Potri.010G073600 Populus trichocarpa HOM05D006440 ORTHO05D003987 6.1e-266 920.6 594 75.4
CSS0026181 Camellia sinensis var. sinensis HOM05D006440 ORTHO05D003987 6.7e-265 917.1 600 75.0
MELO3C006441.2 Cucumis melo HOM05D006440 ORTHO05D003987 6.7e-265 917.1 595 74.6
CANSAT78G1511 Cannabis sativa HOM05D006440 ORTHO05D003987 1.5e-264 916.0 596 73.8
Potri.008G165000 Populus trichocarpa HOM05D006440 ORTHO05D003987 1.9e-264 915.6 594 75.4
Atru.chr4.2134 Acer truncatum HOM05D006440 ORTHO05D003987 5.7e-264 914.1 597 74.2
TWI09G0180 Tripterygium wilfordii HOM05D006440 ORTHO05D003987 1.4e-262 909.4 595 73.4
Gohir.A09G225400 Gossypium hirsutum HOM05D006440 ORTHO05D003987 3.1e-262 908.3 595 74.5
Sed0013572 Sechium edule HOM05D006440 ORTHO05D003987 5.0e-260 901.0 595 74.3
MD13G1210600 Malus domestica HOM05D006440 ORTHO05D003987 1.9e-259 899.0 596 73.7
Nn1g02707 Nelumbo nucifera HOM05D006440 ORTHO05D003987 4.2e-259 897.9 601 73.2
Prupe.1G035000 Prunus persica HOM05D006440 ORTHO05D003987 4.2e-259 897.9 595 73.3
Gohir.D09G227100 Gossypium hirsutum HOM05D006440 ORTHO05D003987 9.4e-259 896.7 595 73.4
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 2.3e-257 892.1 485 90.5
TAR365G0504 Trochodendron aralioides HOM05D006440 ORTHO05D003987 5.1e-257 891.0 598 72.2
Rhsim04G0187900 Rhododendron simsii HOM05D006440 ORTHO05D003987 1.3e-255 886.3 632 69.8
vmacro08450 Vaccinium macrocarpon HOM05D006440 ORTHO05D003987 4.8e-255 884.4 670 66.9
ClCG05G004420 Citrullus lanatus HOM05D006440 ORTHO05D003987 6.9e-254 880.6 634 69.1
HanXRQChr13g0418761 Helianthus annuus HOM05D006440 ORTHO05D003987 1.4e-251 872.8 599 71.0
COL.COLO4_15832 Corchorus olitorius HOM05D006440 ORTHO05D003987 4.2e-251 871.3 595 72.1
PGR004G0512 Punica granatum HOM05D006440 ORTHO05D003987 7.2e-251 870.5 594 70.2
Sopen09g032600 Solanum pennellii HOM05D006440 ORTHO05D003987 2.7e-250 868.6 595 70.4
Dinv29887 Davidia involucrata HOM05D006440 ORTHO05D003188 1.8e-249 865.9 556 76.3
Cc03_g05160 Coffea canephora HOM05D006440 ORTHO05D003987 3.9e-249 864.8 605 69.9
Sabra10G0034700 Salix brachista HOM05D006440 ORTHO05D003987 8.8e-249 863.6 634 68.8
SalBow2G2218 Salvia bowleyana HOM05D006440 ORTHO05D003987 3.3e-248 861.7 615 68.9
CAN.G793.7 Capsicum annuum HOM05D006440 ORTHO05D003987 7.4e-248 860.5 596 69.8
DCAR_027296 Daucus carota HOM05D006440 ORTHO05D003987 1.4e-246 856.3 598 69.4
MSTRG.9914 Avicennia marina HOM05D006440 ORTHO05D003987 2.6e-245 852.0 598 69.9
RcHm_v2.0_Chr4g0391871 Rosa chinensis HOM05D006440 ORTHO05D003987 7.7e-245 850.5 597 69.3
FAN17G2886 Fragaria x ananassa HOM05D006440 ORTHO05D003987 1.7e-244 849.4 596 69.5
Migut.G00449 Erythranthe guttata HOM05D006440 ORTHO05D003987 2.2e-244 849.0 597 69.0
FvH4_4g03210 Fragaria vesca HOM05D006440 ORTHO05D003987 1.4e-241 839.7 596 69.1
SGA_v2.0_scaffold88G27269 Striga asiatica HOM05D006440 ORTHO05D003987 2.4e-238 828.9 592 69.3
Aqoxy2G03617 Aquilegia oxysepala HOM05D006440 ORTHO05D003987 1.5e-235 819.7 599 68.8
Gorai.006G249000 Gossypium raimondii HOM05D006440 ORTHO05D003987 4.2e-235 818.1 549 74.0
ECA240G3037 Erigeron canadensis HOM05D006440 ORTHO05D003987 1.8e-233 812.8 571 69.0
FAN12G1575 Fragaria x ananassa HOM05D006440 ORTHO05D003987 4.4e-232 808.1 596 67.6
FAN22G0224 Fragaria x ananassa HOM05D006440 ORTHO05D003987 4.4e-232 808.1 596 67.8
MBI18_g37356_MAGBIO Magnolia biondii HOM05D006440 ORTHO05D003987 4.4e-232 808.1 647 63.7
EL10Ac3g05914 Beta vulgaris HOM05D006440 ORTHO05D003987 7.5e-232 807.4 598 66.7
Oeu025570.2 Olea europaea HOM05D006440 ORTHO05D000397 4.1e-230 801.6 536 72.4
THA.LOC104815988 Tarenaya hassleriana HOM05D006440 ORTHO05D003987 4.1e-230 801.6 595 65.4
Lsat_1_v5_gn_3_121341 Lactuca sativa HOM05D006440 ORTHO05D003987 6.5e-228 794.3 597 67.2
PSO017G7287 Papaver somniferum HOM05D006440 ORTHO05D003987 1.5e-224 783.1 597 64.2
PSO063G3815 Papaver somniferum HOM05D006440 ORTHO05D003987 4.4e-224 781.6 597 63.7
Solyc09g089660.4 Solanum lycopersicum HOM05D006440 ORTHO05D003987 7.5e-224 780.8 548 69.7
Hund04543 Selenicereus undatus HOM05D006440 ORTHO05D003987 9.8e-224 780.4 598 65.4
AUR62015479 Chenopodium quinoa HOM05D006440 ORTHO05D003987 5.4e-222 774.6 599 65.3
Thhalv10003170m.g Eutrema salsugineum HOM05D006440 ORTHO05D003987 5.0e-220 768.1 597 62.3
Manes.15G038500 Manihot esculenta HOM05D006440 ORTHO05D003987 2.5e-219 765.8 587 66.6
Sp2g08350 Schrenkiella parvula HOM05D006440 ORTHO05D003987 2.1e-218 762.7 597 62.0
CDE06G0279 Ceratophyllum demersum HOM05D006440 ORTHO05D003987 3.4e-216 755.4 606 63.7
Lj6A660T45 Lonicera japonica HOM05D006440 ORTHO05D003987 4.4e-216 755.0 611 65.0
Haze_11338 Corylus avellana HOM05D006440 ORTHO05D003987 7.5e-216 754.2 653 60.2
Actinidia04464 Actinidia chinensis HOM05D006440 ORTHO05D003987 2.2e-215 752.7 520 70.8
BcaB07g30569 Brassica carinata HOM05D006440 ORTHO05D003987 6.4e-215 751.1 597 60.5
Aa31LG5G3660 Aethionema arabicum HOM05D006440 ORTHO05D003987 1.1e-214 750.4 595 62.4
Peaxi162Scf00024g01821 Petunia axillaris HOM05D006440 ORTHO05D003987 1.1e-214 750.4 530 68.9
Ah.07g207430 Amaranthus hybridus HOM05D006440 ORTHO05D003987 7.8e-213 744.2 581 65.1
Sc25g0004030 Simmondsia chinensis HOM05D006440 ORTHO05D003987 7.8e-213 744.2 532 68.0
AL8G16820 Arabidopsis lyrata HOM05D006440 ORTHO05D003987 2.3e-212 742.7 594 61.8
AUR62002263 Chenopodium quinoa HOM05D006440 ORTHO05D003987 5.0e-212 741.5 686 57.3
Thecc.04G250600 Theobroma cacao HOM05D006440 ORTHO05D003987 1.8e-209 733.0 595 63.0
C02p44000 Brassica napus HOM05D006440 ORTHO05D003987 2.3e-209 732.6 597 59.8
BcaC03g16584 Brassica carinata HOM05D006440 ORTHO05D003987 1.5e-208 729.9 599 59.8
Nitab4.5_0008345g0020 Nicotiana tabacum HOM05D006440 ORTHO05D003987 3.4e-208 728.8 511 70.3
BolC2t10447H Brassica oleracea HOM05D006440 ORTHO05D003987 7.5e-208 727.6 597 59.6
BraA02t07826Z Brassica rapa HOM05D006440 ORTHO05D003987 3.7e-207 725.3 599 59.1
unitig_748.g7321 Utricularia gibba HOM05D006440 ORTHO05D003987 8.3e-207 724.2 617 59.5
AT5G43500 Arabidopsis thaliana HOM05D006440 ORTHO05D003987 1.4e-206 723.4 594 60.1
A02p27870 Brassica napus HOM05D006440 ORTHO05D003987 1.4e-206 723.4 598 59.0
Os04g0177600 Oryza sativa ssp. japonica HOM05D006440 ORTHO05D003987 9.2e-206 720.7 602 59.5
ATR0680G034 Amborella trichopoda HOM05D006440 ORTHO05D003987 1.1e-201 707.2 581 63.5
CARHR180120 Cardamine hirsuta HOM05D006440 ORTHO05D003987 1.4e-198 696.8 597 58.8
Psat2g067040 Pisum sativum HOM05D006440 ORTHO05D003987 5.1e-196 688.3 380 88.4
Carub.0008s0511 Capsella rubella HOM05D006440 ORTHO05D003987 7.3e-195 684.5 558 60.6
Nitab4.5_0000342g0190 Nicotiana tabacum HOM05D006440 ORTHO05D003987 6.7e-164 581.6 533 56.8
HPP92_008424 Vanilla planifolia HOM05D006440 ORTHO05D003987 1.4e-137 494.2 395 63.5
Pp3c3_14850 Physcomitrium patens HOM05D006440 ORTHO05D003987 1.1e-134 484.6 607 44.8
Mapoly0028s0034 Marchantia polymorpha HOM05D006440 ORTHO05D003987 2.5e-118 430.3 433 50.3
MD16G1213700 Malus domestica HOM05D006440 ORTHO05D003987 6.1e-117 425.6 531 48.0
SMO117G0008 Selaginella moellendorffii HOM05D006440 ORTHO05D003987 7.5e-115 418.7 599 39.9
PGSC0003DMG400017256 Solanum tuberosum HOM05D006440 ORTHO05D003987 1.0e-103 381.7 245 72.7
Cpa.g.sc44.85 Carica papaya HOM05D006440 ORTHO05D003987 7.0e-89 332.4 205 77.1
Zm00001eb087470 Zea mays HOM05D006440 ORTHO05D003987 2.1e-80 304.3 291 55.3
Zm00001eb087460 Zea mays HOM05D006440 ORTHO05D003987 3.5e-80 303.5 251 56.6
CBR_g37544 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-68 265.4 625 32.0
HPP92_027995 Vanilla planifolia HOM05D006440 ORTHO05D003987 5.1e-63 246.5 175 65.1
HanXRQChr13g0422471 Helianthus annuus HOM05D006440 ORTHO05D003987 4.0e-44 183.7 158 61.4
HPP92_008423 Vanilla planifolia HOM05D006440 ORTHO05D003987 1.1e-38 165.6 147 57.1
SEGI_34555 Sequoiadendron giganteum HOM05D006440 ORTHO05D003987 5.9e-35 153.3 114 60.5
Dinv44661 Davidia involucrata HOM05D006440 ORTHO05D003987 4.6e-32 143.7 110 68.2
HanXRQChr13g0422461 Helianthus annuus HOM05D006440 ORTHO05D003987 1.4e-31 142.1 81 80.2
Hma1.2p1_1716F.1_g299120 Hydrangea macrophylla HOM05D006440 ORTHO05D003987 7.0e-20 103.2 69 65.2
SHI00694 Sapria himalayana HOM05D006440 ORTHO05D003987 3.8e-18 97.4 101 50.5
Cfa026271 Carpinus fangiana HOM05D006440 ORTHO05D003987 3.6e-16 90.9 315 25.7
SHI00689 Sapria himalayana HOM05D006440 ORTHO05D003987 5.2e-15 87.0 57 77.2
Nn5g28601 Nelumbo nucifera HOM05D006440 ORTHO05D003987 4.4e-14 84.0 55 69.1
MD16G1213300 Malus domestica HOM05D006440 ORTHO05D003987 3.2e-09 67.8 35 80.0
SHI00691 Sapria himalayana HOM05D000023 ORTHO05D000014 7.2e-09 66.6 63 54.0
Haze_11337 Corylus avellana HOM05D006440 ORTHO05D003987 9.4e-09 66.2 32 93.8
SHI00693 Sapria himalayana HOM05D006440 ORTHO05D003987 1.2e-08 65.9 56 57.1
arahy.Tifrunner.gnm1.ann1.IPBD8F Arachis hypogaea HOM05D002333 ORTHO05D003987 8.0e-08 63.2 62 58.1
BolC7t44124H Brassica oleracea HOM05D000173 ORTHO05D006747 8.8e-07 59.7 386 19.9
Lalb_Chr07g0195271 Lupinus albus HOM05D000173 ORTHO05D004400 8.8e-07 59.7 377 21.5
AL5G16020 Arabidopsis lyrata HOM05D000173 ORTHO05D006747 1.2e-06 59.3 395 20.5
A06p41560 Brassica napus HOM05D000173 ORTHO05D006747 1.2e-06 59.3 386 19.7
C07p36100 Brassica napus HOM05D000173 ORTHO05D006747 1.2e-06 59.3 386 19.7
BraA06t27081Z Brassica rapa HOM05D000173 ORTHO05D006747 1.2e-06 59.3 386 19.7
BcaC06g33869 Brassica carinata HOM05D000173 ORTHO05D006747 2.0e-06 58.5 386 19.7
Sp2g16120 Schrenkiella parvula HOM05D000173 ORTHO05D006747 2.6e-06 58.2 394 20.6
AT3G27000 Arabidopsis thaliana HOM05D000173 ORTHO05D006747 4.4e-06 57.4 395 20.0
Thhalv10004377m.g Eutrema salsugineum HOM05D000173 ORTHO05D006747 4.4e-06 57.4 394 20.3
BcaB04g19422 Brassica carinata HOM05D000173 ORTHO05D006747 5.7e-06 57.0 394 20.3
A09p03230 Brassica napus HOM05D000173 ORTHO05D006747 5.7e-06 57.0 394 20.3
C09p03430 Brassica napus HOM05D000173 ORTHO05D006747 5.7e-06 57.0 394 20.3
BolC9t53264H Brassica oleracea HOM05D000173 ORTHO05D006747 5.7e-06 57.0 394 20.3
BcaC06g31028 Brassica carinata HOM05D000173 ORTHO05D006747 7.5e-06 56.6 386 19.4
BraA09t35961Z Brassica rapa HOM05D000173 ORTHO05D006747 7.5e-06 56.6 394 20.3


User provided reference genes

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