Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g070515 Medicago truncatula HOM05D004045 ORTHO05D004923 0.0e+00 1086.2 610 100.0
TPR.G35731 Trifolium pratense HOM05D004045 ORTHO05D004923 1.1e-281 973.0 620 84.7
Ca_09715_v3 Cicer arietinum L. HOM05D004045 ORTHO05D004923 1.2e-277 959.5 611 86.4
Psat6g057800 Pisum sativum HOM05D004045 ORTHO05D004923 4.6e-277 957.6 661 80.5
Lj5g0016746 Lotus japonicus HOM05D004045 ORTHO05D004923 3.4e-240 835.1 610 77.2
Lalb_Chr02g0142411 Lupinus albus HOM05D004045 ORTHO05D004923 4.5e-240 834.7 611 71.8
Phvul.007G176500 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 9.4e-238 827.0 603 72.8
VMungo0720G0425 Vigna mungo HOM05D004045 ORTHO05D004923 6.7e-236 820.8 606 72.4
Glyma.02G142300 Glycine max HOM05D004045 ORTHO05D004923 4.4e-235 818.1 604 75.3
arahy.Tifrunner.gnm1.ann1.CU0E1J Arachis hypogaea HOM05D004045 ORTHO05D004923 2.0e-232 809.3 617 74.1
arahy.Tifrunner.gnm1.ann1.M5F7QZ Arachis hypogaea HOM05D004045 ORTHO05D004923 5.9e-232 807.7 617 74.6
Glyma.10G032000 Glycine max HOM05D004045 ORTHO05D004923 9.4e-230 800.4 613 72.6
Lalb_Chr21g0306291 Lupinus albus HOM05D004045 ORTHO05D004923 6.1e-229 797.7 616 71.8
Glyma.19G161300 Glycine max HOM05D004045 ORTHO05D004923 1.0e-212 743.8 592 68.8
Glyma.03G158900 Glycine max HOM05D004045 ORTHO05D004923 1.3e-210 736.9 594 70.0
arahy.Tifrunner.gnm1.ann1.4ZN8WV Arachis hypogaea HOM05D004045 ORTHO05D004923 3.7e-210 735.3 598 68.6
arahy.Tifrunner.gnm1.ann1.ZDV5ZG Arachis hypogaea HOM05D004045 ORTHO05D004923 1.8e-209 733.0 608 67.8
CiPaw.03G257500 Carya illinoinensis HOM05D004045 ORTHO05D004923 3.0e-204 715.7 612 64.5
Phvul.001G156800 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 8.9e-204 714.1 595 66.2
Haze_24534 Corylus avellana HOM05D004045 ORTHO05D004923 2.0e-203 713.0 593 68.0
Cfa002328 Carpinus fangiana HOM05D004045 ORTHO05D004923 5.4e-201 704.9 595 66.9
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 4.5e-200 701.8 571 67.4
Dinv22479 Davidia involucrata HOM05D004045 ORTHO05D004923 7.8e-200 701.0 627 61.9
QL12p042733 Quercus lobata HOM05D004045 ORTHO05D004923 1.7e-199 699.9 603 65.5
TAR362G1267 Trochodendron aralioides HOM05D004045 ORTHO05D004923 1.5e-198 696.8 604 63.2
Cpa.g.sc52.91 Carica papaya HOM05D004045 ORTHO05D004923 8.0e-197 691.0 620 63.4
Actinidia09090 Actinidia chinensis HOM05D004045 ORTHO05D004923 1.8e-196 689.9 597 63.0
CANSAT01G0779 Cannabis sativa HOM05D004045 ORTHO05D004923 2.0e-195 686.4 617 61.6
Duzib133G0161 Durio zibethinus HOM05D004045 ORTHO05D004923 2.6e-195 686.0 600 65.0
Manes.01G201500 Manihot esculenta HOM05D004045 ORTHO05D004923 4.4e-195 685.3 620 64.5
GSVIVG01000724001 Vitis vinifera HOM05D004045 ORTHO05D004923 9.8e-195 684.1 602 66.4
Rhsim01G0269600 Rhododendron simsii HOM05D004045 ORTHO05D004923 1.7e-194 683.3 597 66.2
TWI12G0443 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 1.1e-193 680.6 590 64.4
Atru.chr5.1570 Acer truncatum HOM05D004045 ORTHO05D004923 2.7e-192 676.0 609 65.5
Potri.002G044800 Populus trichocarpa HOM05D004045 ORTHO05D004923 3.5e-192 675.6 605 64.8
Thecc.01G267300 Theobroma cacao HOM05D004045 ORTHO05D004923 1.7e-191 673.3 599 65.3
Prupe.8G232000 Prunus persica HOM05D004045 ORTHO05D004923 8.6e-191 671.0 607 64.9
Gorai.001G243100 Gossypium raimondii HOM05D004045 ORTHO05D004923 1.1e-190 670.6 618 61.0
Nn3g19505 Nelumbo nucifera HOM05D004045 ORTHO05D004923 1.9e-190 669.8 607 60.1
Duzib211G0616 Durio zibethinus HOM05D004045 ORTHO05D004923 2.5e-190 669.5 608 63.3
Nitab4.5_0000187g0210 Nicotiana tabacum HOM05D004045 ORTHO05D004923 2.5e-190 669.5 634 59.0
Gohir.A07G209100 Gossypium hirsutum HOM05D004045 ORTHO05D004923 3.3e-190 669.1 616 60.6
Gohir.D07G215300 Gossypium hirsutum HOM05D004045 ORTHO05D004923 3.3e-190 669.1 617 60.8
Nn1g02572 Nelumbo nucifera HOM05D004045 ORTHO05D004923 4.3e-190 668.7 602 63.1
Cc01_g18840 Coffea canephora HOM05D004045 ORTHO05D004923 3.6e-189 665.6 613 63.3
Potri.005G218400 Populus trichocarpa HOM05D004045 ORTHO05D004923 3.6e-189 665.6 610 60.8
Gohir.D07G215000 Gossypium hirsutum HOM05D004045 ORTHO05D004923 4.7e-189 665.2 618 60.0
Ciclev10019274m.g Citrus clementina HOM05D004045 ORTHO05D004923 8.0e-189 664.5 598 64.2
CiPaw.04G182000 Carya illinoinensis HOM05D004045 ORTHO05D004923 1.8e-188 663.3 549 69.2
PGSC0003DMG400019300 Solanum tuberosum HOM05D004045 ORTHO05D004923 2.3e-188 662.9 598 60.2
TWI18G1228 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 2.3e-188 662.9 597 61.5
Gorai.001G243000 Gossypium raimondii HOM05D004045 ORTHO05D004923 3.1e-188 662.5 617 60.0
SGA_v2.0_scaffold138G35275 Striga asiatica HOM05D004045 ORTHO05D004923 4.0e-188 662.1 603 58.9
Oeu025793.1 Olea europaea HOM05D004045 ORTHO05D004923 1.5e-187 660.2 609 60.4
PGR119G1275 Punica granatum HOM05D004045 ORTHO05D004923 2.0e-187 659.8 609 61.6
Sopen09g027670 Solanum pennellii HOM05D004045 ORTHO05D004923 4.4e-187 658.7 598 61.4
vmacro14871 Vaccinium macrocarpon HOM05D004045 ORTHO05D004923 5.8e-187 658.3 590 61.4
MSTRG.21511 Avicennia marina HOM05D004045 ORTHO05D004923 1.7e-186 656.8 599 62.1
MD05G1205600 Malus domestica HOM05D004045 ORTHO05D004923 2.9e-186 656.0 613 62.0
Peaxi162Scf00049g00208 Petunia axillaris HOM05D004045 ORTHO05D004923 4.9e-186 655.2 602 62.6
Eucgr.B01491 Eucalyptus grandis HOM05D004045 ORTHO05D004923 6.4e-186 654.8 641 61.8
CsaV3_7G027590 Cucumis sativus L. HOM05D004045 ORTHO05D004923 4.1e-185 652.1 597 61.0
MD10G1192800 Malus domestica HOM05D004045 ORTHO05D004923 5.4e-185 651.7 591 61.4
CSS0003244 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 1.2e-184 650.6 605 60.8
MELO3C015764.2 Cucumis melo HOM05D004045 ORTHO05D004923 1.2e-184 650.6 608 59.5
Duzib138G0995 Durio zibethinus HOM05D004045 ORTHO05D004923 3.5e-184 649.0 594 63.1
Sabra02G0035900 Salix brachista HOM05D004045 ORTHO05D004923 4.6e-184 648.7 682 58.4
Actinidia19983 Actinidia chinensis HOM05D004045 ORTHO05D004923 1.7e-183 646.7 470 70.6
DCAR_018449 Daucus carota HOM05D004045 ORTHO05D004923 3.9e-183 645.6 597 61.8
Sed0019687 Sechium edule HOM05D004045 ORTHO05D004923 1.1e-182 644.0 603 60.2
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 1.5e-182 643.7 583 59.9
Peaxi162Scf01311g00024 Petunia axillaris HOM05D004045 ORTHO05D004923 3.3e-182 642.5 589 65.0
Sed0014339 Sechium edule HOM05D004045 ORTHO05D004923 3.3e-182 642.5 595 61.8
Sabra05G0167500 Salix brachista HOM05D004045 ORTHO05D004923 5.6e-182 641.7 611 61.2
Solyc06g084060.3 Solanum lycopersicum HOM05D004045 ORTHO05D004923 5.6e-182 641.7 603 58.9
Nitab4.5_0003053g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 2.1e-181 639.8 625 58.6
Nitab4.5_0004899g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 2.1e-181 639.8 606 58.7
Dinv34570 Davidia involucrata HOM05D004045 ORTHO05D004923 6.2e-181 638.3 533 64.9
Sopen06g035450 Solanum pennellii HOM05D004045 ORTHO05D004923 6.2e-181 638.3 603 58.5
THA.LOC104804696 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 6.2e-181 638.3 587 59.8
CAN.G1259.1 Capsicum annuum HOM05D004045 ORTHO05D004923 4.0e-180 635.6 603 58.4
FvH4_2g22510 Fragaria vesca HOM05D004045 ORTHO05D004923 8.9e-180 634.4 612 62.3
Nitab4.5_0001044g0050 Nicotiana tabacum HOM05D004045 ORTHO05D004923 1.5e-179 633.6 608 58.4
ClCG09G007540 Citrullus lanatus HOM05D004045 ORTHO05D004923 2.0e-179 633.3 571 64.6
FAN20G1895 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.0e-179 633.3 603 62.5
PGSC0003DMG400020140 Solanum tuberosum HOM05D004045 ORTHO05D004923 5.8e-179 631.7 596 59.1
Lj2A1159T22 Lonicera japonica HOM05D004045 ORTHO05D004923 2.2e-178 629.8 532 66.5
CSS0008019 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 2.9e-178 629.4 608 59.7
Lsat_1_v5_gn_9_9980 Lactuca sativa HOM05D004045 ORTHO05D004923 2.4e-177 626.3 609 57.1
Aqoxy5G00345 Aquilegia oxysepala HOM05D004045 ORTHO05D004923 3.2e-177 625.9 603 58.4
THA.LOC104824390 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 7.1e-177 624.8 629 56.9
RcHm_v2.0_Chr6g0289551 Rosa chinensis HOM05D004045 ORTHO05D004923 1.2e-176 624.0 615 61.5
ECA247G4082 Erigeron canadensis HOM05D004045 ORTHO05D004923 2.1e-176 623.2 639 55.7
FAN27G3048 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.7e-176 622.9 614 60.7
Migut.D00375 Erythranthe guttata HOM05D004045 ORTHO05D004923 3.0e-175 619.4 606 57.9
SalBow4G0878 Salvia bowleyana HOM05D004045 ORTHO05D004923 5.1e-175 618.6 562 58.5
Carub.0005s2125 Capsella rubella HOM05D004045 ORTHO05D004923 1.1e-174 617.5 598 57.7
MBI11_g02060_MAGBIO Magnolia biondii HOM05D004045 ORTHO05D004923 2.5e-174 616.3 580 58.8
FAN24G3385 Fragaria x ananassa HOM05D004045 ORTHO05D004923 3.3e-174 615.9 632 60.0
Thhalv10010227m.g Eutrema salsugineum HOM05D004045 ORTHO05D004923 7.3e-174 614.8 619 54.6
AL5G35730 Arabidopsis lyrata HOM05D004045 ORTHO05D004923 9.6e-174 614.4 597 57.0
HanXRQChr10g0281461 Helianthus annuus HOM05D004045 ORTHO05D004923 1.2e-173 614.0 616 58.0
Sp5g07800 Schrenkiella parvula HOM05D004045 ORTHO05D004923 1.6e-173 613.6 592 59.5
A09p47600 Brassica napus HOM05D004045 ORTHO05D004923 3.6e-173 612.5 596 57.6
BraA09t40216Z Brassica rapa HOM05D004045 ORTHO05D004923 3.6e-173 612.5 596 57.7
BcaC07g39799 Brassica carinata HOM05D004045 ORTHO05D004923 4.7e-173 612.1 594 56.2
Aa31sc64G70 Aethionema arabicum HOM05D004045 ORTHO05D004923 2.4e-172 609.8 593 57.5
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.4e-172 609.8 601 59.7
AT3G54650 Arabidopsis thaliana HOM05D004045 ORTHO05D004923 3.1e-172 609.4 607 55.8
BcaB01g00171 Brassica carinata HOM05D004045 ORTHO05D004923 4.0e-172 609.0 592 56.9
HanXRQChr15g0467051 Helianthus annuus HOM05D004045 ORTHO05D004923 4.4e-171 605.5 613 55.8
BolC8t50591H Brassica oleracea HOM05D004045 ORTHO05D004923 1.3e-170 604.0 606 55.1
PSO832G0351 Papaver somniferum HOM05D004045 ORTHO05D004923 1.7e-170 603.6 641 53.8
C08p29800 Brassica napus HOM05D004045 ORTHO05D004923 2.2e-170 603.2 604 55.0
A04p05190 Brassica napus HOM05D004045 ORTHO05D004923 3.8e-170 602.4 605 57.0
EL10Ac5g10476 Beta vulgaris HOM05D004045 ORTHO05D004923 4.9e-170 602.1 611 58.8
PSO210G5962 Papaver somniferum HOM05D004045 ORTHO05D004923 4.9e-170 602.1 639 54.6
CARHR164560 Cardamine hirsuta HOM05D004045 ORTHO05D004923 2.7e-168 596.3 608 55.1
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.7e-168 596.3 636 56.4
Ah.11g049960 Amaranthus hybridus HOM05D004045 ORTHO05D004923 1.0e-167 594.3 618 55.5
BraA04t16229Z Brassica rapa HOM05D004045 ORTHO05D004923 1.5e-163 580.5 579 57.5
AUR62032255 Chenopodium quinoa HOM05D004045 ORTHO05D004923 4.9e-162 575.5 448 68.8
BcaC02g09055 Brassica carinata HOM05D004045 ORTHO05D004923 1.9e-161 573.5 574 57.8
TAR633G0766 Trochodendron aralioides HOM05D004045 ORTHO05D004923 2.4e-161 573.2 596 56.9
unitig_22.g5466 Utricularia gibba HOM05D004045 ORTHO05D004923 2.3e-159 566.6 587 54.0
C04p37930 Brassica napus HOM05D004045 ORTHO05D004923 8.1e-157 558.1 558 57.9
Gohir.A07G209200 Gossypium hirsutum HOM05D004045 ORTHO05D004923 1.8e-156 557.0 479 63.9
Hund02880 Selenicereus undatus HOM05D004045 ORTHO05D004923 3.1e-156 556.2 610 52.8
CDE02G4505 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 9.3e-153 544.7 591 55.3
CDE06G0297 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 2.7e-152 543.1 576 55.9
ATR0665G431 Amborella trichopoda HOM05D004045 ORTHO05D004923 7.6e-147 525.0 606 50.7
Sc24g0004300 Simmondsia chinensis HOM05D004045 ORTHO05D004923 1.1e-145 521.2 504 56.7
BcaB02g08450 Brassica carinata HOM05D004045 ORTHO05D004923 1.9e-145 520.4 592 51.2
HPP92_015890 Vanilla planifolia HOM05D004045 ORTHO05D004923 1.1e-142 511.1 589 51.6
BolC4t25368H Brassica oleracea HOM05D004045 ORTHO05D004923 4.3e-142 509.2 373 67.0
Os12g0601000 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 1.0e-135 488.0 584 51.7
Zm00001eb135530 Zea mays HOM05D004045 ORTHO05D004923 2.5e-134 483.4 589 50.1
AUR62011940 Chenopodium quinoa HOM05D004045 ORTHO05D004923 2.2e-133 480.3 367 72.2
SHI09942 Sapria himalayana HOM05D004045 ORTHO05D004923 1.1e-132 478.0 581 49.6
HPP92_026284 Vanilla planifolia HOM05D004045 ORTHO05D004923 1.4e-129 467.6 627 47.5
Zm00001eb051080 Zea mays HOM05D004045 ORTHO05D004923 9.4e-121 438.3 593 45.0
Solyc09g065880.4 Solanum lycopersicum HOM05D004045 ORTHO05D004923 7.9e-120 435.3 338 68.0
HPP92_015894 Vanilla planifolia HOM05D004045 ORTHO05D004923 2.6e-118 430.3 450 53.1
Zm00001eb031170 Zea mays HOM05D004045 ORTHO05D004923 5.3e-108 396.0 381 59.3
Oeu010137.1 Olea europaea HOM05D004045 ORTHO05D004923 1.6e-96 357.8 315 62.5
SEGI_41615 Sequoiadendron giganteum HOM05D004045 ORTHO05D004923 1.5e-94 351.3 624 36.7
Os03g0633400 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 1.3e-93 348.2 338 59.8
COL.COLO4_06074 Corchorus olitorius HOM05D004045 ORTHO05D004923 2.1e-88 330.9 364 51.9
arahy.Tifrunner.gnm1.ann1.RJD5GQ Arachis hypogaea HOM05D004045 ORTHO05D004923 2.1e-67 261.2 269 58.4
Oeu009234.1 Olea europaea HOM05D004045 ORTHO05D004923 6.6e-66 256.1 163 81.6
arahy.Tifrunner.gnm1.ann1.X4NPJI Arachis hypogaea HOM05D004045 ORTHO05D004923 1.3e-58 231.9 237 58.6
Oeu039511.1 Olea europaea HOM05D004045 ORTHO05D004923 5.1e-50 203.4 247 46.6
Hma1.2p1_0744F.1_g211840 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 1.4e-44 185.3 138 71.0
CBR_g27883 Chara braunii HOM05D004045 ORTHO05D004923 1.1e-36 159.1 290 34.8
Medtr2g066740 Medicago truncatula HOM05D004045 ORTHO05D004923 1.8e-34 151.8 244 45.1
Medtr0878s0020 Medicago truncatula HOM05D004045 ORTHO05D004923 4.0e-31 140.6 78 87.2
CBR_g29330 Chara braunii HOM05D004045 ORTHO05D004923 6.9e-31 139.8 449 25.6
Sc24g0004260 Simmondsia chinensis HOM05D004045 ORTHO05D004923 1.7e-29 135.2 167 52.1
PRCOL_00001919 Prasinoderma coloniale HOM05D004045 ORTHO05D004923 5.7e-25 120.2 563 23.8
Lj1g0005140 Lotus japonicus HOM05D004045 ORTHO05D004923 2.4e-23 114.8 74 67.6
Psat7g221000 Pisum sativum HOM05D004045 ORTHO05D004923 3.1e-23 114.4 100 61.0
Psat7g235240 Pisum sativum HOM05D004045 ORTHO05D004923 1.2e-22 112.5 71 77.5
arahy.Tifrunner.gnm1.ann1.KW8Q2S Arachis hypogaea HOM05D000023 ORTHO05D000014 5.5e-20 103.6 66 83.3
PSO591G0166 Papaver somniferum HOM05D004045 ORTHO05D004923 1.4e-15 89.0 83 59.0
Rhsim04G0076300 Rhododendron simsii HOM05D004045 ORTHO05D004923 2.4e-15 88.2 72 62.5
Rhsim07G0057800 Rhododendron simsii HOM05D003247 ORTHO05D003974 4.5e-14 84.0 62 67.7
Os03g0633100 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 4.6e-11 73.9 210 30.5
AUR62027361 Chenopodium quinoa HOM05D004045 ORTHO05D005832 7.9e-11 73.2 103 42.7
Ca_07189_v3 Cicer arietinum L. HOM05D001219 ORTHO05D001017 9.7e-09 66.2 246 27.2
Lsat_1_v5_gn_5_80480 Lactuca sativa HOM05D004045 ORTHO05D002405 2.4e-07 61.6 35 80.0
Lsat_1_v5_gn_1_65601 Lactuca sativa HOM05D001017 ORTHO05D001025 6.9e-07 60.1 36 77.8
arahy.Tifrunner.gnm1.ann1.5E42VB Arachis hypogaea HOM05D004045 ORTHO05D083177 3.4e-06 57.8 38 81.6
Ca_06859_v3 Cicer arietinum L. HOM05D001219 ORTHO05D001017 3.4e-06 57.8 230 28.3
AUR62026403 Chenopodium quinoa HOM05D012008 ORTHO05D014086 5.9e-06 57.0 58 55.2
TPR.G16396 Trifolium pratense HOM05D001219 ORTHO05D001017 5.9e-06 57.0 249 27.7


User provided reference genes

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