Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g063790 Medicago truncatula HOM05D001610 ORTHO05D258278 1.0e-30 136.0 63 100.0
Psat2g018240 Pisum sativum HOM05D001610 ORTHO05D001585 4.2e-16 87.4 106 44.3
Medtr5g090420 Medicago truncatula HOM05D001610 ORTHO05D001585 1.3e-14 82.4 103 42.7
TPR.G8785 Trifolium pratense HOM05D001610 ORTHO05D001585 5.1e-14 80.5 104 41.3
Ca_06236_v3 Cicer arietinum L. HOM05D001610 ORTHO05D001585 1.1e-13 79.3 104 40.4
VMungo0647G2499 Vigna mungo HOM05D001610 ORTHO05D001585 1.1e-13 79.3 105 40.0
Glyma.02G282600 Glycine max HOM05D001610 ORTHO05D001585 1.5e-13 79.0 104 41.3
LjContig00049g0014740 Lotus japonicus HOM05D001610 ORTHO05D001585 1.9e-13 78.6 104 41.3
LjContig00049g0010351 Lotus japonicus HOM05D001610 ORTHO05D001585 2.5e-13 78.2 104 41.3
Glyma.14G031700 Glycine max HOM05D001610 ORTHO05D001585 9.7e-13 76.3 101 41.6
Phvul.008G196400 Phaseolus vulgaris HOM05D001610 ORTHO05D001585 6.3e-12 73.6 105 38.1
Ca_13921_v3 Cicer arietinum L. HOM05D001610 ORTHO05D001585 3.1e-11 71.2 102 38.2
Medtr3g449990 Medicago truncatula HOM05D001610 ORTHO05D001585 4.1e-11 70.9 103 38.8
arahy.Tifrunner.gnm1.ann1.C265D9 Arachis hypogaea HOM05D001610 ORTHO05D001585 5.3e-11 70.5 103 35.9
arahy.Tifrunner.gnm1.ann1.ER1LI4 Arachis hypogaea HOM05D001610 ORTHO05D001585 5.3e-11 70.5 103 35.9
Lalb_Chr04g0249001 Lupinus albus HOM05D001610 ORTHO05D001585 6.9e-11 70.1 103 35.9
Glyma.08G304300 Glycine max HOM05D001610 ORTHO05D001585 9.1e-11 69.7 103 35.9
TPR.G14758 Trifolium pratense HOM05D001610 ORTHO05D001585 1.2e-10 69.3 103 36.9
Lalb_Chr10g0106491 Lupinus albus HOM05D001610 ORTHO05D001585 2.6e-10 68.2 103 35.0
Dinv17656 Davidia involucrata HOM05D001610 ORTHO05D001585 1.7e-09 65.5 104 36.5
Manes.04G160600 Manihot esculenta HOM05D001610 ORTHO05D001585 1.7e-09 65.5 104 35.6
Prupe.1G352100 Prunus persica HOM05D001610 ORTHO05D001585 2.9e-09 64.7 104 35.6
PGR042G3409 Punica granatum HOM05D001610 ORTHO05D001585 2.9e-09 64.7 103 35.9
Dinv11944 Davidia involucrata HOM05D001610 ORTHO05D001585 3.8e-09 64.3 105 36.2
QL01p000253 Quercus lobata HOM05D001610 ORTHO05D001585 3.8e-09 64.3 105 34.3
QL08p045507 Quercus lobata HOM05D001610 ORTHO05D001585 5.0e-09 63.9 103 35.0
Sc10g0006570 Simmondsia chinensis HOM05D001610 ORTHO05D001585 5.0e-09 63.9 104 35.6
CsaV3_4G032080 Cucumis sativus L. HOM05D001610 ORTHO05D001585 6.5e-09 63.5 104 33.7
Duzib187G1035 Durio zibethinus HOM05D001610 ORTHO05D001585 6.5e-09 63.5 103 35.9
Glyma.18G114800 Glycine max HOM05D001610 ORTHO05D001585 6.5e-09 63.5 103 34.0
Lalb_Chr17g0348131 Lupinus albus HOM05D001610 ORTHO05D001585 6.5e-09 63.5 103 34.0
MD09G1146400 Malus domestica HOM05D001610 ORTHO05D001585 6.5e-09 63.5 103 33.0
SGA_v2.0_scaffold49G18387 Striga asiatica HOM05D001610 ORTHO05D001585 6.5e-09 63.5 103 34.0
TWI23G0089 Tripterygium wilfordii HOM05D001610 ORTHO05D001585 6.5e-09 63.5 103 35.9
CANSAT64G0881 Cannabis sativa HOM05D001610 ORTHO05D001585 8.5e-09 63.2 103 33.0
Duzib132G0499 Durio zibethinus HOM05D001610 ORTHO05D001585 8.5e-09 63.2 104 34.6
Psat5g182520 Pisum sativum HOM05D001610 ORTHO05D001585 8.5e-09 63.2 103 37.9
Potri.002G055800 Populus trichocarpa HOM05D001610 ORTHO05D001585 8.5e-09 63.2 103 35.9
DCAR_026871 Daucus carota HOM05D001610 ORTHO05D001585 1.1e-08 62.8 103 34.0
Duzib147G0143 Durio zibethinus HOM05D001610 ORTHO05D001585 1.1e-08 62.8 104 35.6
Phvul.006G027500 Phaseolus vulgaris HOM05D001610 ORTHO05D001585 1.1e-08 62.8 103 34.0
Ah.02g120760 Amaranthus hybridus HOM05D001610 ORTHO05D001585 1.4e-08 62.4 103 33.0
CSS0040123 Camellia sinensis var. sinensis HOM05D001610 ORTHO05D001585 1.4e-08 62.4 104 34.6
Gohir.A09G008000 Gossypium hirsutum HOM05D001610 ORTHO05D001585 1.4e-08 62.4 103 35.9
Gohir.D09G007400 Gossypium hirsutum HOM05D001610 ORTHO05D001585 1.4e-08 62.4 103 35.9
Gorai.006G008900 Gossypium raimondii HOM05D001610 ORTHO05D001585 1.4e-08 62.4 103 35.9
Manes.02G089800 Manihot esculenta HOM05D001610 ORTHO05D001585 1.4e-08 62.4 103 35.9
Atru.chr11.33 Acer truncatum HOM05D001610 ORTHO05D001585 1.9e-08 62.0 104 34.6
Cfa018669 Carpinus fangiana HOM05D001610 ORTHO05D001585 1.9e-08 62.0 104 33.7
ClCG11G016590 Citrullus lanatus HOM05D001610 ORTHO05D001585 1.9e-08 62.0 104 33.7
Cc05_g00850 Coffea canephora HOM05D001610 ORTHO05D001585 1.9e-08 62.0 103 35.0
Haze_17396 Corylus avellana HOM05D001610 ORTHO05D001585 1.9e-08 62.0 104 33.7
Gohir.D12G084800 Gossypium hirsutum HOM05D001610 ORTHO05D001585 1.9e-08 62.0 103 35.0
Gorai.008G095100 Gossypium raimondii HOM05D001610 ORTHO05D001585 1.9e-08 62.0 103 35.0
Sabra02G0045300 Salix brachista HOM05D001610 ORTHO05D001585 1.9e-08 62.0 103 35.0
SGA_v2.0_scaffold73G24473 Striga asiatica HOM05D001610 ORTHO05D007237 1.9e-08 62.0 103 35.0
MSTRG.14892 Avicennia marina HOM05D001610 ORTHO05D001585 2.5e-08 61.6 103 35.9
Ciclev10014731m.g Citrus clementina HOM05D001610 ORTHO05D001585 2.5e-08 61.6 104 34.6
Duzib052G0966 Durio zibethinus HOM05D001610 ORTHO05D001585 2.5e-08 61.6 104 34.6
Manes.01G131200 Manihot esculenta HOM05D001610 ORTHO05D001585 2.5e-08 61.6 103 35.0
Sed0027128 Sechium edule HOM05D001610 ORTHO05D001585 2.5e-08 61.6 104 33.7
Thecc.02G151800 Theobroma cacao HOM05D001610 ORTHO05D001585 2.5e-08 61.6 104 34.6
Actinidia04071 Actinidia chinensis HOM05D001610 ORTHO05D001585 3.2e-08 61.2 104 33.7
Gohir.A12G011100 Gossypium hirsutum HOM05D001610 ORTHO05D001585 3.2e-08 61.2 104 33.7
Gohir.D12G011500 Gossypium hirsutum HOM05D001610 ORTHO05D001585 3.2e-08 61.2 104 33.7
Gorai.008G011600 Gossypium raimondii HOM05D001610 ORTHO05D001585 3.2e-08 61.2 104 33.7
Rhsim13G0166600 Rhododendron simsii HOM05D001610 ORTHO05D001585 3.2e-08 61.2 104 33.7
SalBow7G0942 Salvia bowleyana HOM05D001610 ORTHO05D001585 3.2e-08 61.2 101 33.7
TWI59G0554 Tripterygium wilfordii HOM05D001610 ORTHO05D001585 3.2e-08 61.2 103 34.0
vmacro16030 Vaccinium macrocarpon HOM05D001610 ORTHO05D001585 3.2e-08 61.2 104 33.7
CiPaw.04G136800 Carya illinoinensis HOM05D001610 ORTHO05D001585 4.2e-08 60.8 101 34.7
Eucgr.A02037 Eucalyptus grandis HOM05D001610 ORTHO05D001585 4.2e-08 60.8 103 33.0
Zm00001eb173190 Zea mays HOM05D001610 ORTHO05D001585 4.2e-08 60.8 103 35.0
MSTRG.14104 Avicennia marina HOM05D001610 ORTHO05D001585 5.5e-08 60.5 104 30.8
Ciclev10031058m.g Citrus clementina HOM05D001610 ORTHO05D001585 5.5e-08 60.5 103 32.0
Lj3A843T76 Lonicera japonica HOM05D001610 ORTHO05D001585 5.5e-08 60.5 104 32.7
Prupe.3G179200 Prunus persica HOM05D001610 ORTHO05D001585 7.2e-08 60.1 103 34.0
Thecc.01G166700 Theobroma cacao HOM05D001610 ORTHO05D001585 7.2e-08 60.1 103 35.0
TWI14G0856 Tripterygium wilfordii HOM05D001610 ORTHO05D001585 7.2e-08 60.1 99 35.4
GSVIVG01034348001 Vitis vinifera HOM05D001610 ORTHO05D001585 7.2e-08 60.1 104 32.7
Hma1.2p1_0513F.1_g169660 Hydrangea macrophylla HOM05D001610 ORTHO05D001585 9.4e-08 59.7 104 32.7
MD17G1133000 Malus domestica HOM05D001610 ORTHO05D001585 9.4e-08 59.7 103 32.0
CiPaw.16G000500 Carya illinoinensis HOM05D001610 ORTHO05D001585 1.2e-07 59.3 104 31.7
Duzib264G0527 Durio zibethinus HOM05D001610 ORTHO05D001585 1.2e-07 59.3 103 35.0
Cfa023021 Carpinus fangiana HOM05D001610 ORTHO05D001585 1.6e-07 58.9 104 31.7
CiPaw.04G136300 Carya illinoinensis HOM05D001610 ORTHO05D001585 1.6e-07 58.9 104 32.7
Os02g0294600 Oryza sativa ssp. japonica HOM05D001610 ORTHO05D001585 1.6e-07 58.9 102 34.3
CANSAT78G2171 Cannabis sativa HOM05D001610 ORTHO05D001585 2.1e-07 58.5 103 33.0
AUR62003525 Chenopodium quinoa HOM05D001610 ORTHO05D001585 2.1e-07 58.5 103 32.0
AUR62017839 Chenopodium quinoa HOM05D001610 ORTHO05D001585 2.1e-07 58.5 103 32.0
COL.COLO4_33153 Corchorus olitorius HOM05D001610 ORTHO05D001585 2.1e-07 58.5 104 32.7
FvH4_6g38890 Fragaria vesca HOM05D001610 ORTHO05D001585 2.1e-07 58.5 103 33.0
FAN09G3671 Fragaria x ananassa HOM05D001610 ORTHO05D001585 2.1e-07 58.5 103 33.0
Nitab4.5_0004406g0050 Nicotiana tabacum HOM05D001610 ORTHO05D001585 2.1e-07 58.5 103 32.0
Nitab4.5_0006378g0030 Nicotiana tabacum HOM05D001610 ORTHO05D001585 2.1e-07 58.5 103 32.0
Nitab4.5_0008321g0020 Nicotiana tabacum HOM05D001610 ORTHO05D001585 2.1e-07 58.5 103 30.1
RcHm_v2.0_Chr2g0152471 Rosa chinensis HOM05D001610 ORTHO05D001585 2.1e-07 58.5 103 33.0
Dinv04150 Davidia involucrata HOM05D001610 ORTHO05D001585 2.7e-07 58.2 103 30.1
MSTRG.12264 Avicennia marina HOM05D001610 ORTHO05D001585 4.6e-07 57.4 103 29.1
Migut.M00069 Erythranthe guttata HOM05D001610 ORTHO05D001585 4.6e-07 57.4 103 33.0
Oeu012356.1 Olea europaea HOM05D001610 ORTHO05D001585 6.1e-07 57.0 103 31.1
Sabra05G0157100 Salix brachista HOM05D001610 ORTHO05D001585 6.1e-07 57.0 100 34.0
AT5G08560 Arabidopsis thaliana HOM05D001610 ORTHO05D001585 7.9e-07 56.6 104 32.7
Carub.0006s0752 Capsella rubella HOM05D001610 ORTHO05D001585 7.9e-07 56.6 104 32.7
CARHR204410 Cardamine hirsuta HOM05D001610 ORTHO05D001585 7.9e-07 56.6 104 32.7
FAN05G5738 Fragaria x ananassa HOM05D001610 ORTHO05D001585 7.9e-07 56.6 100 34.0
AL6G19280 Arabidopsis lyrata HOM05D001610 ORTHO05D001585 1.0e-06 56.2 104 31.7
COL.COLO4_08316 Corchorus olitorius HOM05D001610 ORTHO05D001585 1.0e-06 56.2 102 32.4
Potri.005G206600 Populus trichocarpa HOM05D001610 ORTHO05D001585 1.0e-06 56.2 103 31.1
Sp6g34330 Schrenkiella parvula HOM05D001610 ORTHO05D001585 1.0e-06 56.2 104 31.7
SMO232G0108 Selaginella moellendorffii HOM05D001610 ORTHO05D001585 1.0e-06 56.2 103 31.1
HPP92_018668 Vanilla planifolia HOM05D001610 ORTHO05D001585 1.0e-06 56.2 103 30.1
BcaB01g05584 Brassica carinata HOM05D001610 ORTHO05D001585 1.4e-06 55.8 104 31.7
A03p03970 Brassica napus HOM05D001610 ORTHO05D001585 1.4e-06 55.8 104 31.7
A10p28160 Brassica napus HOM05D001610 ORTHO05D001585 1.4e-06 55.8 104 31.7
C09p68370 Brassica napus HOM05D001610 ORTHO05D001585 1.4e-06 55.8 104 31.7
BolC9t59584H Brassica oleracea HOM05D001610 ORTHO05D001585 1.4e-06 55.8 104 31.7
BraA03t09740Z Brassica rapa HOM05D001610 ORTHO05D001585 1.4e-06 55.8 104 31.7
BraA10t44865Z Brassica rapa HOM05D001610 ORTHO05D001585 1.4e-06 55.8 104 31.7
PSO675G7486 Papaver somniferum HOM05D001610 ORTHO05D001585 1.4e-06 55.8 103 31.1
PSO675G8969 Papaver somniferum HOM05D001610 ORTHO05D001585 1.4e-06 55.8 103 31.1
Sed0021790 Sechium edule HOM05D001610 ORTHO05D001585 1.4e-06 55.8 104 29.8
Solyc07g044850.3 Solanum lycopersicum HOM05D001610 ORTHO05D001585 1.4e-06 55.8 103 31.1
THA.LOC104818401 Tarenaya hassleriana HOM05D001610 ORTHO05D001585 1.4e-06 55.8 104 32.7
EL10Ac6g15356 Beta vulgaris HOM05D001610 ORTHO05D001585 1.8e-06 55.5 103 29.1
MELO3C022966.2 Cucumis melo HOM05D001610 ORTHO05D001585 1.8e-06 55.5 104 29.8
CsaV3_4G032060 Cucumis sativus L. HOM05D001610 ORTHO05D001585 1.8e-06 55.5 104 29.8
Thhalv10013060m.g Eutrema salsugineum HOM05D001610 ORTHO05D001585 1.8e-06 55.5 104 31.7
Lsat_1_v5_gn_1_16041 Lactuca sativa HOM05D001610 ORTHO05D001585 1.8e-06 55.5 103 29.1
Oeu022918.1 Olea europaea HOM05D001610 ORTHO05D001585 1.8e-06 55.5 103 29.1
Sopen07g023410 Solanum pennellii HOM05D001610 ORTHO05D001585 1.8e-06 55.5 103 31.1
CDE06G2108 Ceratophyllum demersum HOM05D001610 ORTHO05D001585 2.3e-06 55.1 106 29.2
Migut.M00080 Erythranthe guttata HOM05D001610 ORTHO05D001585 2.3e-06 55.1 103 31.1
SEGI_15505 Sequoiadendron giganteum HOM05D001610 ORTHO05D001585 2.3e-06 55.1 103 29.1
Zm00001eb261740 Zea mays HOM05D001610 ORTHO05D001585 2.3e-06 55.1 99 34.3
Atru.chr6.2017 Acer truncatum HOM05D001610 ORTHO05D001585 3.0e-06 54.7 103 31.1
HanXRQChr02g0042801 Helianthus annuus HOM05D001610 ORTHO05D001585 3.0e-06 54.7 103 25.2
CDE03G0215 Ceratophyllum demersum HOM05D001610 ORTHO05D001585 3.9e-06 54.3 106 29.2
MBI18_g38095_MAGBIO Magnolia biondii HOM05D001610 ORTHO05D001585 3.9e-06 54.3 103 30.1
HPP92_013911 Vanilla planifolia HOM05D001610 ORTHO05D001585 3.9e-06 54.3 103 30.1
HPP92_013921 Vanilla planifolia HOM05D001610 ORTHO05D001585 3.9e-06 54.3 103 30.1
Lsat_1_v5_gn_3_36081 Lactuca sativa HOM05D001610 ORTHO05D001585 5.1e-06 53.9 103 29.1
Lj1A652T35 Lonicera japonica HOM05D001610 ORTHO05D001585 5.1e-06 53.9 104 28.8
Nn5g27631 Nelumbo nucifera HOM05D001610 ORTHO05D001585 5.1e-06 53.9 104 29.8
Aa31LG3G17970 Aethionema arabicum HOM05D001610 ORTHO05D001585 6.7e-06 53.5 104 32.7
C03p04440 Brassica napus HOM05D001610 ORTHO05D001585 6.7e-06 53.5 104 30.8
BolC3t12975H Brassica oleracea HOM05D001610 ORTHO05D001585 6.7e-06 53.5 104 30.8
DCAR_023497 Daucus carota HOM05D001610 ORTHO05D001585 6.7e-06 53.5 103 29.1
BcaB08g37245 Brassica carinata HOM05D001610 ORTHO05D001585 8.8e-06 53.1 71 39.4


User provided reference genes

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