Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g055265 Medicago truncatula HOM05D027292 ORTHO05D000024 1.6e-45 186.0 113 100.0
Medtr2g030030 Medicago truncatula HOM05D027292 ORTHO05D000024 1.0e-41 173.3 109 93.6
Medtr1g115590 Medicago truncatula HOM05D027292 ORTHO05D000024 7.5e-40 167.2 109 94.5
Medtr7g082600 Medicago truncatula HOM05D027292 ORTHO05D261690 3.2e-35 151.8 100 95.0
Medtr8g015840 Medicago truncatula HOM05D000110 ORTHO05D000024 8.9e-25 117.1 137 63.5
Psat4g193560 Pisum sativum HOM05D000110 ORTHO05D000024 9.5e-19 97.1 143 52.4
Ca_23303_v3 Cicer arietinum L. HOM05D000110 ORTHO05D000024 8.3e-15 84.0 89 65.2
TPR.G24243 Trifolium pratense HOM05D000110 ORTHO05D000024 1.1e-14 83.6 139 54.7
VMungo0331G0417 Vigna mungo HOM05D000110 ORTHO05D000024 7.3e-11 70.9 139 36.7
GSVIVG01016887001 Vitis vinifera HOM05D000110 ORTHO05D000024 2.8e-10 68.9 77 49.4
Cfa003604 Carpinus fangiana HOM05D000110 ORTHO05D000024 3.6e-10 68.6 78 48.7
Haze_15925 Corylus avellana HOM05D000110 ORTHO05D000024 4.7e-10 68.2 80 47.5
Nn6g35412 Nelumbo nucifera HOM05D000110 ORTHO05D000024 4.7e-10 68.2 118 36.4
MBI01_g47445_MAGBIO Magnolia biondii HOM05D000110 ORTHO05D000024 1.1e-09 67.0 80 46.2
CANSAT56G2066 Cannabis sativa HOM05D000110 ORTHO05D000024 2.3e-09 65.9 80 45.0
MBI04_g06228_MAGBIO Magnolia biondii HOM05D000110 ORTHO05D000024 4.0e-09 65.1 80 45.0
Glyma.15G022800 Glycine max HOM05D000110 ORTHO05D000024 6.8e-09 64.3 134 40.3
Dinv30395 Davidia involucrata HOM05D000110 ORTHO05D000024 8.9e-09 63.9 80 43.8
Lalb_Chr22g0351701 Lupinus albus HOM05D000110 ORTHO05D000024 8.9e-09 63.9 79 45.6
CiPaw.02G141800 Carya illinoinensis HOM05D000110 ORTHO05D000024 1.2e-08 63.5 80 45.0
Lj3g0024908 Lotus japonicus HOM05D000110 ORTHO05D000024 1.2e-08 63.5 122 43.4
Duzib160G0187 Durio zibethinus HOM05D000110 ORTHO05D000024 1.5e-08 63.2 129 47.3
arahy.Tifrunner.gnm1.ann1.R2DQAY Arachis hypogaea HOM05D000110 ORTHO05D000024 2.0e-08 62.8 151 35.1
DCAR_016172 Daucus carota HOM05D000110 ORTHO05D000024 2.0e-08 62.8 80 43.8
QL05p015284 Quercus lobata HOM05D000110 ORTHO05D000024 2.6e-08 62.4 80 46.2
QL05p015882 Quercus lobata HOM05D000110 ORTHO05D000024 2.6e-08 62.4 80 46.2
CiPaw.01G226900 Carya illinoinensis HOM05D000110 ORTHO05D000024 3.4e-08 62.0 80 43.8
Lj3g0020268 Lotus japonicus HOM05D000110 ORTHO05D000024 3.4e-08 62.0 135 47.4
ClCG07G013640 Citrullus lanatus HOM05D000110 ORTHO05D000024 4.4e-08 61.6 76 44.7
MELO3C013043.2 Cucumis melo HOM05D000110 ORTHO05D000024 4.4e-08 61.6 76 44.7
CsaV3_3G043990 Cucumis sativus L. HOM05D000110 ORTHO05D000024 4.4e-08 61.6 76 44.7
Manes.11G028600 Manihot esculenta HOM05D000110 ORTHO05D000024 5.8e-08 61.2 81 44.4
FAN05G1193 Fragaria x ananassa HOM05D000110 ORTHO05D000024 7.5e-08 60.8 74 44.6
VMungo1080G1253 Vigna mungo HOM05D000110 ORTHO05D000024 9.9e-08 60.5 77 44.2
BcaB04g20596 Brassica carinata HOM05D000110 ORTHO05D000024 1.3e-07 60.1 64 45.3
Dinv37930 Davidia involucrata HOM05D000110 ORTHO05D000024 1.3e-07 60.1 78 42.3
arahy.Tifrunner.gnm1.ann1.M9WVP0 Arachis hypogaea HOM05D000110 ORTHO05D000024 1.7e-07 59.7 149 32.2
Prupe.3G052300 Prunus persica HOM05D000110 ORTHO05D000024 1.7e-07 59.7 71 45.1
TAR626G1707 Trochodendron aralioides HOM05D000110 ORTHO05D000024 2.2e-07 59.3 77 42.9
Glyma.13G352000 Glycine max HOM05D000110 ORTHO05D000024 3.7e-07 58.5 134 35.1
Lj5C48T3 Lonicera japonica HOM05D000110 ORTHO05D000024 3.7e-07 58.5 80 41.2
Potri.003G034200 Populus trichocarpa HOM05D000110 ORTHO05D000024 3.7e-07 58.5 81 44.4
Ah.01g016920 Amaranthus hybridus HOM05D000110 ORTHO05D000024 4.9e-07 58.2 31 77.4
Aqoxy7G01283 Aquilegia oxysepala HOM05D000110 ORTHO05D000024 4.9e-07 58.2 70 44.3
Aqoxy7G01285 Aquilegia oxysepala HOM05D000110 ORTHO05D000024 4.9e-07 58.2 70 44.3
Gohir.A10G062000 Gossypium hirsutum HOM05D000110 ORTHO05D000024 4.9e-07 58.2 32 81.2
Ah.01g004490 Amaranthus hybridus HOM05D000110 ORTHO05D000024 6.4e-07 57.8 33 69.7
Glyma.08G195300 Glycine max HOM05D000110 ORTHO05D000024 6.4e-07 57.8 92 47.8
Thhalv10021538m.g Eutrema salsugineum HOM05D000110 ORTHO05D000024 1.1e-06 57.0 64 60.9
Rhsim08G0231700 Rhododendron simsii HOM05D000110 ORTHO05D000024 1.1e-06 57.0 119 31.9
COL.COLO4_30611 Corchorus olitorius HOM05D000110 ORTHO05D000024 1.4e-06 56.6 78 46.2
Gohir.D10G063600 Gossypium hirsutum HOM05D000110 ORTHO05D000024 1.4e-06 56.6 31 80.6
Gorai.011G067500 Gossypium raimondii HOM05D000110 ORTHO05D000024 1.4e-06 56.6 31 80.6
Manes.04G137800 Manihot esculenta HOM05D000110 ORTHO05D000024 1.4e-06 56.6 81 42.0
FAN02G1938 Fragaria x ananassa HOM05D000110 ORTHO05D000024 2.4e-06 55.8 70 42.9
HanXRQChr10g0313141 Helianthus annuus HOM05D000110 ORTHO05D000024 2.4e-06 55.8 31 71.0
Hma1.2p1_0388F.1_g142180 Hydrangea macrophylla HOM05D000110 ORTHO05D000024 2.4e-06 55.8 81 42.0
TAR383G0131 Trochodendron aralioides HOM05D000110 ORTHO05D000024 2.4e-06 55.8 70 42.9
vmacro18818 Vaccinium macrocarpon HOM05D000110 ORTHO05D000024 2.4e-06 55.8 80 40.0
ATR0789G164 Amborella trichopoda HOM05D000110 ORTHO05D000024 3.2e-06 55.5 32 75.0
CAN.G1668.12 Capsicum annuum HOM05D000110 ORTHO05D000024 3.2e-06 55.5 76 40.8
ATR0733G069 Amborella trichopoda HOM05D000110 ORTHO05D000024 4.1e-06 55.1 31 74.2
AT1G51700 Arabidopsis thaliana HOM05D000110 ORTHO05D000024 4.1e-06 55.1 32 75.0
Eucgr.F03105 Eucalyptus grandis HOM05D000110 ORTHO05D000024 4.1e-06 55.1 82 42.7
MD17G1176100 Malus domestica HOM05D000110 ORTHO05D000024 4.1e-06 55.1 68 45.6
Sp3g19310 Schrenkiella parvula HOM05D000110 ORTHO05D000024 4.1e-06 55.1 64 42.2
MSTRG.22601 Avicennia marina HOM05D000110 ORTHO05D000024 5.4e-06 54.7 30 80.0
BcaB02g11273 Brassica carinata HOM05D000110 ORTHO05D000024 5.4e-06 54.7 32 75.0
A01p33610 Brassica napus HOM05D000110 ORTHO05D000024 5.4e-06 54.7 64 43.8
BraA01t03473Z Brassica rapa HOM05D000110 ORTHO05D000024 5.4e-06 54.7 64 43.8
MBI01_g47086_MAGBIO Magnolia biondii HOM05D000110 ORTHO05D000024 5.4e-06 54.7 33 69.7
Ciclev10026336m.g Citrus clementina HOM05D000110 ORTHO05D000024 7.1e-06 54.3 71 40.8
FvH4_6g32990 Fragaria vesca HOM05D000110 ORTHO05D000024 7.1e-06 54.3 69 42.0
FAN14G5883 Fragaria x ananassa HOM05D000110 ORTHO05D000024 7.1e-06 54.3 69 42.0
RcHm_v2.0_Chr2g0142541 Rosa chinensis HOM05D000110 ORTHO05D000024 7.1e-06 54.3 70 42.9
BcaC09g49065 Brassica carinata HOM05D000110 ORTHO05D000024 9.2e-06 53.9 64 43.8
C01p42970 Brassica napus HOM05D000110 ORTHO05D000024 9.2e-06 53.9 64 43.8
BolC1t04242H Brassica oleracea HOM05D000110 ORTHO05D000024 9.2e-06 53.9 64 43.8
CSS0000707 Camellia sinensis var. sinensis HOM05D000110 ORTHO05D000024 9.2e-06 53.9 74 39.2
Eucgr.J02884 Eucalyptus grandis HOM05D000110 ORTHO05D000024 9.2e-06 53.9 29 79.3
FAN09G2093 Fragaria x ananassa HOM05D000110 ORTHO05D000024 9.2e-06 53.9 68 42.6
HanXRQChr12g0360711 Helianthus annuus HOM05D000110 ORTHO05D000024 9.2e-06 53.9 29 72.4
PSO210G4285 Papaver somniferum HOM05D000110 ORTHO05D000024 9.2e-06 53.9 30 76.7
Sed0000992 Sechium edule HOM05D000110 ORTHO05D000024 9.2e-06 53.9 75 41.3


User provided reference genes

Program Settings