Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g054715 Medicago truncatula HOM05D000861 ORTHO05D004749 1.1e-224 783.1 388 100.0
Psat6g110040 Pisum sativum HOM05D000861 ORTHO05D004749 9.2e-192 673.7 390 84.4
TPR.G14497 Trifolium pratense HOM05D000861 ORTHO05D004749 4.0e-187 658.3 368 87.0
Glyma.02G168400 Glycine max HOM05D000861 ORTHO05D004749 8.4e-161 570.9 393 73.3
Lj1g0012940 Lotus japonicus HOM05D000861 ORTHO05D004749 6.7e-158 561.2 397 69.0
Ca_00040_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 8.5e-153 544.3 393 66.9
Lalb_Chr20g0111111 Lupinus albus HOM05D000861 ORTHO05D004749 1.2e-151 540.4 397 66.2
Psat1g222880 Pisum sativum HOM05D000861 ORTHO05D004749 1.5e-149 533.5 393 65.6
Lalb_Chr01g0017651 Lupinus albus HOM05D000861 ORTHO05D004749 5.7e-149 531.6 382 66.8
Glyma.03G206500 Glycine max HOM05D000861 ORTHO05D004749 1.7e-148 530.0 396 65.9
Lalb_Chr25g0287681 Lupinus albus HOM05D000861 ORTHO05D004749 2.2e-148 529.6 382 67.3
Ca_26442_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 3.7e-148 528.9 310 83.5
Glyma.19G204100 Glycine max HOM05D000861 ORTHO05D004749 3.7e-148 528.9 391 66.5
VMungo1383G1884 Vigna mungo HOM05D000861 ORTHO05D004749 2.5e-144 516.2 390 64.4
TPR.G29255 Trifolium pratense HOM05D000861 ORTHO05D004749 3.9e-142 508.8 389 65.8
arahy.Tifrunner.gnm1.ann1.BI8ZDZ Arachis hypogaea HOM05D000861 ORTHO05D004749 1.3e-140 503.8 377 65.5
arahy.Tifrunner.gnm1.ann1.9W4D6L Arachis hypogaea HOM05D000861 ORTHO05D004749 3.7e-140 502.3 377 65.5
VMungo0720G2154 Vigna mungo HOM05D000861 ORTHO05D004749 3.1e-139 499.2 366 67.2
arahy.Tifrunner.gnm1.ann1.5F6CY5 Arachis hypogaea HOM05D000861 ORTHO05D004749 2.0e-138 496.5 389 63.2
TPR.G2104 Trifolium pratense HOM05D000861 ORTHO05D004749 6.5e-137 491.5 389 63.0
arahy.Tifrunner.gnm1.ann1.2N6KDB Arachis hypogaea HOM05D000861 ORTHO05D004749 8.5e-137 491.1 388 62.9
Lj5g0002775 Lotus japonicus HOM05D000861 ORTHO05D004749 1.6e-135 486.9 394 64.5
Phvul.007G262800 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 2.3e-134 483.0 362 65.7
Dinv25026 Davidia involucrata HOM05D000861 ORTHO05D004749 4.8e-132 475.3 349 63.6
Haze_20079 Corylus avellana HOM05D000861 ORTHO05D004749 8.2e-132 474.6 352 63.9
CSS0019173 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 8.5e-129 464.5 374 58.8
FAN01G1629 Fragaria x ananassa HOM05D000861 ORTHO05D004749 2.5e-128 463.0 345 62.0
FvH4_7g05020 Fragaria vesca HOM05D000861 ORTHO05D004749 9.4e-128 461.1 345 62.0
Manes.08G039800 Manihot esculenta HOM05D000861 ORTHO05D004749 9.4e-128 461.1 363 62.0
Potri.016G062900 Populus trichocarpa HOM05D000861 ORTHO05D004749 9.4e-128 461.1 349 64.8
FAN06G3356 Fragaria x ananassa HOM05D000861 ORTHO05D004749 4.7e-127 458.8 345 62.0
RcHm_v2.0_Chr1g0331291 Rosa chinensis HOM05D000861 ORTHO05D004749 6.1e-127 458.4 348 61.2
CiPaw.09G025900 Carya illinoinensis HOM05D000861 ORTHO05D004749 1.8e-126 456.8 349 61.9
FAN10G0630 Fragaria x ananassa HOM05D000861 ORTHO05D004749 3.3e-125 452.6 367 58.6
Cc09_g02090 Coffea canephora HOM05D000861 ORTHO05D004749 1.7e-124 450.3 382 57.9
Haze_04427 Corylus avellana HOM05D000861 ORTHO05D004749 1.1e-123 447.6 351 61.0
QL07p025600 Quercus lobata HOM05D000861 ORTHO05D004749 1.1e-123 447.6 353 60.6
Cfa006350 Carpinus fangiana HOM05D000861 ORTHO05D004749 3.1e-123 446.0 390 56.9
Prupe.2G061200 Prunus persica HOM05D000861 ORTHO05D004749 7.0e-123 444.9 348 60.6
THA.LOC104826781 Tarenaya hassleriana HOM05D000861 ORTHO05D004749 9.1e-123 444.5 381 57.7
Phvul.001G200100 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 1.3e-121 440.7 316 66.5
TWI74G1428 Tripterygium wilfordii HOM05D000861 ORTHO05D004749 2.2e-121 439.9 366 59.0
CANSAT54G1949 Cannabis sativa HOM05D000861 ORTHO05D004749 2.9e-121 439.5 357 58.8
TAR636G3394 Trochodendron aralioides HOM05D000861 ORTHO05D004749 6.5e-121 438.3 384 56.5
CiPaw.10G023500 Carya illinoinensis HOM05D000861 ORTHO05D004749 1.9e-120 436.8 351 59.5
Lj2A1153T47 Lonicera japonica HOM05D000861 ORTHO05D004749 3.2e-120 436.0 358 55.9
Migut.C01187 Erythranthe guttata HOM05D000861 ORTHO05D004749 5.5e-120 435.3 362 58.0
Rhsim10G0079800 Rhododendron simsii HOM05D000861 ORTHO05D004749 5.5e-120 435.3 373 55.2
Sabra16G0065200 Salix brachista HOM05D000861 ORTHO05D004749 7.2e-120 434.9 379 58.6
Sp3g10170 Schrenkiella parvula HOM05D000861 ORTHO05D004749 1.2e-119 434.1 379 57.5
TAR633G2067 Trochodendron aralioides HOM05D000861 ORTHO05D004749 1.2e-119 434.1 355 58.0
CSS0040474 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 1.0e-118 431.0 344 59.6
CsaV3_4G031490 Cucumis sativus L. HOM05D000861 ORTHO05D004749 5.2e-118 428.7 370 54.9
MELO3C009074.2 Cucumis melo HOM05D000861 ORTHO05D008567 6.8e-118 428.3 366 54.6
Hma1.2p1_0636F.1_g193240 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 8.8e-118 427.9 309 62.8
PGSC0003DMG400002212 Solanum tuberosum HOM05D000861 ORTHO05D004749 1.5e-117 427.2 363 54.3
RcHm_v2.0_Chr1g0331341 Rosa chinensis HOM05D000861 ORTHO05D004749 1.7e-116 423.7 313 62.3
vmacro05483 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 2.2e-116 423.3 366 55.7
Manes.09G040600 Manihot esculenta HOM05D000861 ORTHO05D004749 1.4e-115 420.6 310 63.5
Sopen04g019180 Solanum pennellii HOM05D000861 ORTHO05D004749 2.4e-115 419.9 372 53.2
Ciclev10012217m.g Citrus clementina HOM05D000861 ORTHO05D004749 7.0e-115 418.3 310 63.5
Nn5g30627 Nelumbo nucifera HOM05D000861 ORTHO05D004749 1.2e-114 417.5 339 57.5
Solyc04g049290.2 Solanum lycopersicum HOM05D000861 ORTHO05D004749 1.6e-114 417.2 372 53.0
Sabra06G0151900 Salix brachista HOM05D000861 ORTHO05D004749 7.7e-114 414.8 392 54.3
Nn2g14698 Nelumbo nucifera HOM05D000861 ORTHO05D004749 1.0e-113 414.5 351 56.7
Lj1A65T56 Lonicera japonica HOM05D000861 ORTHO05D004749 1.7e-113 413.7 341 56.9
GSVIVG01033426001 Vitis vinifera HOM05D000861 ORTHO05D004749 1.5e-112 410.6 357 56.3
ClCG04G000550 Citrullus lanatus HOM05D000861 ORTHO05D004749 1.9e-112 410.2 360 54.2
Sabra16G0064900 Salix brachista HOM05D000861 ORTHO05D004749 2.5e-112 409.8 375 56.8
SGA_v2.0_scaffold274G46507 Striga asiatica HOM05D000861 ORTHO05D004749 1.2e-111 407.5 380 52.1
Peaxi162Scf00072g00619 Petunia axillaris HOM05D000861 ORTHO05D004749 1.6e-111 407.1 382 52.6
Aqoxy4G02829 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 4.7e-111 405.6 386 52.1
BcaB06g25559 Brassica carinata HOM05D000861 ORTHO05D004749 1.4e-110 404.1 387 53.2
PGR004G1046 Punica granatum HOM05D000861 ORTHO05D004749 2.6e-109 399.8 367 53.7
ECA234G4058 Erigeron canadensis HOM05D000861 ORTHO05D004749 3.4e-109 399.4 365 54.5
unitig_749.g14024 Utricularia gibba HOM05D000861 ORTHO05D004749 4.4e-109 399.1 326 57.4
MBI01_g21127_MAGBIO Magnolia biondii HOM05D000861 ORTHO05D004749 1.7e-108 397.1 336 55.1
AUR62025238 Chenopodium quinoa HOM05D000861 ORTHO05D004749 1.1e-107 394.4 370 54.1
Nitab4.5_0000575g0240 Nicotiana tabacum HOM05D000861 ORTHO05D004749 1.8e-107 393.7 374 53.2
Aqoxy2G01335 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 3.1e-107 392.9 326 57.1
Eucgr.A02509 Eucalyptus grandis HOM05D000861 ORTHO05D004749 1.2e-106 391.0 343 55.1
PGSC0003DMG400016019 Solanum tuberosum HOM05D000861 ORTHO05D004749 1.3e-105 387.5 341 54.5
HanXRQChr12g0359061 Helianthus annuus HOM05D000861 ORTHO05D004749 1.7e-105 387.1 390 50.3
Hma1.2p1_0516F.1_g170530 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 1.7e-105 387.1 350 53.4
Peaxi162Scf00195g00910 Petunia axillaris HOM05D000861 ORTHO05D004749 8.6e-105 384.8 352 52.6
Sabra16G0065500 Salix brachista HOM05D000861 ORTHO05D004749 1.2e-103 380.9 378 53.2
Nitab4.5_0007421g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 1.6e-103 380.6 367 52.3
BcaC05g29310 Brassica carinata HOM05D000861 ORTHO05D004749 3.6e-103 379.4 397 50.9
CAN.G186.36 Capsicum annuum HOM05D000861 ORTHO05D004749 8.0e-103 378.3 339 53.4
BraA05t22541Z Brassica rapa HOM05D000861 ORTHO05D007385 1.0e-102 377.9 373 53.1
vmacro22548 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 1.4e-102 377.5 369 50.7
A05p37430 Brassica napus HOM05D000861 ORTHO05D007385 3.1e-102 376.3 373 53.1
PSO384G1311 Papaver somniferum HOM05D000861 ORTHO05D004749 8.9e-102 374.8 361 51.0
MD02G1263700 Malus domestica HOM05D000861 ORTHO05D004749 1.5e-101 374.0 339 52.8
Sopen04g004750 Solanum pennellii HOM05D000861 ORTHO05D004749 1.5e-101 374.0 385 50.1
C05p55990 Brassica napus HOM05D000861 ORTHO05D004749 2.0e-101 373.6 379 52.0
Solyc04g009600.3 Solanum lycopersicum HOM05D000861 ORTHO05D004749 2.0e-101 373.6 385 50.1
Lsat_1_v5_gn_2_66000 Lactuca sativa HOM05D000861 ORTHO05D004749 4.4e-101 372.5 381 49.9
Sed0004581 Sechium edule HOM05D000861 ORTHO05D004749 1.4e-99 367.5 359 49.9
MD07G1054500 Malus domestica HOM05D000861 ORTHO05D004749 2.4e-99 366.7 340 52.1
Duzib128G1936 Durio zibethinus HOM05D000861 ORTHO05D004749 5.4e-99 365.5 384 49.0
COL.COLO4_29438 Corchorus olitorius HOM05D000861 ORTHO05D004749 9.2e-99 364.8 381 50.9
Duzib093G1597 Durio zibethinus HOM05D000861 ORTHO05D004749 2.0e-98 363.6 384 49.7
Nitab4.5_0008820g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 6.0e-98 362.1 369 49.6
MSTRG.26071 Avicennia marina HOM05D000861 ORTHO05D004749 7.8e-98 361.7 387 47.8
Atru.chr8.1223 Acer truncatum HOM05D000861 ORTHO05D004749 1.5e-96 357.5 351 52.7
Thecc.05G180600 Theobroma cacao HOM05D000861 ORTHO05D004749 1.5e-96 357.5 371 50.1
Dinv24029 Davidia involucrata HOM05D000861 ORTHO05D004749 1.2e-95 354.4 254 62.6
Gohir.A09G130700 Gossypium hirsutum HOM05D000861 ORTHO05D004749 4.7e-95 352.4 374 48.4
EL10Ac8g19073 Beta vulgaris HOM05D000861 ORTHO05D004749 6.2e-95 352.1 377 48.0
AUR62028947 Chenopodium quinoa HOM05D000861 ORTHO05D004749 8.0e-95 351.7 419 44.6
ATR0789G014 Amborella trichopoda HOM05D000861 ORTHO05D004749 6.8e-94 348.6 288 56.9
BcaB04g18704 Brassica carinata HOM05D000861 ORTHO05D004749 6.8e-94 348.6 269 60.6
AL3G23550 Arabidopsis lyrata HOM05D000861 ORTHO05D004749 4.9e-92 342.4 381 47.2
Carub.0003s1128 Capsella rubella HOM05D000861 ORTHO05D004749 1.4e-91 340.9 387 46.8
Oeu022105.1 Olea europaea HOM05D000861 ORTHO05D004749 1.4e-91 340.9 373 46.9
CDE05G2486 Ceratophyllum demersum HOM05D000861 ORTHO05D004749 1.9e-91 340.5 316 51.9
Oeu003219.1 Olea europaea HOM05D000861 ORTHO05D004749 2.4e-91 340.1 381 47.0
AT3G11950 Arabidopsis thaliana HOM05D000861 ORTHO05D004749 7.0e-91 338.6 382 46.6
Thhalv10020413m.g Eutrema salsugineum HOM05D000861 ORTHO05D004749 2.3e-89 333.6 362 48.1
CARHR086500 Cardamine hirsuta HOM05D000861 ORTHO05D004749 3.0e-89 333.2 373 47.2
Oeu051191.1 Olea europaea HOM05D000861 ORTHO05D004749 8.6e-89 331.6 388 45.4
Aa31LG3G5570 Aethionema arabicum HOM05D000861 ORTHO05D004749 1.1e-88 331.3 340 48.8
Sc13g0002540 Simmondsia chinensis HOM05D000861 ORTHO05D004749 4.3e-88 329.3 391 43.7
DCAR_027450 Daucus carota HOM05D000861 ORTHO05D004749 2.8e-87 326.6 307 51.5
BraA03t12899Z Brassica rapa HOM05D000861 ORTHO05D004749 5.2e-86 322.4 374 47.1
BcaC01g04070 Brassica carinata HOM05D000861 ORTHO05D007385 1.2e-85 321.2 374 46.5
BolC3t16804H Brassica oleracea HOM05D000861 ORTHO05D004749 1.2e-85 321.2 374 46.5
A03p37380 Brassica napus HOM05D000861 ORTHO05D004749 1.5e-85 320.9 374 47.1
Gohir.D09G126600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 5.8e-85 318.9 302 53.3
Gohir.D01G123600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 3.7e-84 316.2 380 43.9
C03p45380 Brassica napus HOM05D000861 ORTHO05D004749 4.9e-84 315.8 369 46.1
PSO425G0018 Papaver somniferum HOM05D000861 ORTHO05D004749 6.4e-84 315.5 271 53.5
Gorai.002G154600 Gossypium raimondii HOM05D000861 ORTHO05D004749 2.4e-83 313.5 380 43.7
SHI28323 Sapria himalayana HOM05D000861 ORTHO05D004749 3.2e-83 313.2 311 49.2
Gohir.A01G136400 Gossypium hirsutum HOM05D000861 ORTHO05D004749 2.7e-82 310.1 380 43.4
Ah.09g231540 Amaranthus hybridus HOM05D000861 ORTHO05D004749 1.7e-81 307.4 363 44.6
Cpa.g.sc85.15 Carica papaya HOM05D000861 ORTHO05D004749 1.2e-77 294.7 365 44.7
Zm00001eb246660 Zea mays HOM05D000861 ORTHO05D004749 7.6e-77 292.0 328 43.9
Nitab4.5_0000691g0150 Nicotiana tabacum HOM05D000861 ORTHO05D004749 7.1e-75 285.4 342 44.4
Os02g0605500 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 2.3e-73 280.4 327 45.0
Gorai.006G145500 Gossypium raimondii HOM05D000861 ORTHO05D004749 1.1e-67 261.5 303 46.2
Mapoly0057s0035 Marchantia polymorpha HOM05D000861 ORTHO05D004749 5.4e-67 259.2 335 40.3
Zm00001eb195790 Zea mays HOM05D000861 ORTHO05D004749 1.2e-66 258.1 323 43.3
Actinidia01592 Actinidia chinensis HOM05D000861 ORTHO05D004749 3.6e-63 246.5 215 54.4
Os12g0181300 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 1.5e-61 241.1 339 38.9
Os04g0218900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 2.6e-61 240.4 342 39.2
Os05g0305200 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 1.3e-60 238.0 342 39.2
Zm00001eb421970 Zea mays HOM05D000861 ORTHO05D004749 1.9e-59 234.2 290 43.4
Pp3c13_13880 Physcomitrium patens HOM05D000861 ORTHO05D004749 8.7e-57 225.3 272 37.9
AagrBONN_evm.TU.Sc2ySwM_228.1074 Anthoceros agrestis HOM05D000861 ORTHO05D004749 7.4e-56 222.2 338 35.5
Pp3c24_6130 Physcomitrium patens HOM05D000861 ORTHO05D004749 1.6e-55 221.1 340 35.9
Zm00001eb093630 Zea mays HOM05D000861 ORTHO05D004749 3.1e-54 216.9 333 38.1
HPP92_008306 Vanilla planifolia HOM05D000861 ORTHO05D004749 2.9e-52 210.3 209 49.3
SMO194G0050 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 1.4e-51 208.0 320 36.6
SMO358G0316 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 2.5e-51 207.2 320 36.6
HPP92_003821 Vanilla planifolia HOM05D000861 ORTHO05D004749 7.1e-51 205.7 191 47.6
SEGI_19220 Sequoiadendron giganteum HOM05D000861 ORTHO05D004749 1.5e-48 198.0 298 35.6
CBR_g23522 Chara braunii HOM05D000861 ORTHO05D004749 4.3e-48 196.4 271 37.3
TAR626G0577 Trochodendron aralioides HOM05D000861 ORTHO05D003237 5.7e-40 169.5 137 59.9
Os04g0217900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 1.6e-39 167.9 177 49.7
Actinidia17295 Actinidia chinensis HOM05D000861 ORTHO05D004749 9.0e-38 162.2 132 54.5
SalBow6G1870 Salvia bowleyana HOM05D000861 ORTHO05D004749 6.1e-34 149.4 166 47.0
TAR626G1779 Trochodendron aralioides HOM05D000861 ORTHO05D004749 7.4e-32 142.5 118 60.2
HPP92_003796 Vanilla planifolia HOM05D000861 ORTHO05D004749 2.4e-30 137.5 161 44.7
TAR371G0304 Trochodendron aralioides HOM05D000861 ORTHO05D003237 2.9e-28 130.6 115 55.7
TAR375G0848 Trochodendron aralioides HOM05D000861 ORTHO05D004749 2.9e-28 130.6 86 65.1
Nitab4.5_0000691g0180 Nicotiana tabacum HOM05D000861 ORTHO05D004749 1.4e-27 128.3 164 37.8
RcHm_v2.0_Chr3g0486361 Rosa chinensis HOM05D000861 ORTHO05D004749 2.1e-26 124.4 89 61.8
SMO361G0253 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 6.1e-26 122.9 257 30.4
RcHm_v2.0_Chr3g0486481 Rosa chinensis HOM05D000861 ORTHO05D004749 1.4e-17 95.1 72 61.1
MCO14G045 Micromonas commoda HOM05D000861 ORTHO05D004749 2.6e-16 90.9 271 25.8
RcHm_v2.0_Chr3g0486371 Rosa chinensis HOM05D000861 ORTHO05D004749 4.8e-15 86.7 84 48.8
HPP92_003822 Vanilla planifolia HOM05D000861 ORTHO05D004749 1.2e-13 82.0 103 40.8
PRCOL_00002048 Prasinoderma coloniale HOM05D000861 ORTHO05D004749 5.9e-13 79.7 214 26.6
Actinidia38607 Actinidia chinensis HOM05D000861 ORTHO05D004749 3.7e-07 60.5 101 36.6


User provided reference genes

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