Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g047840 Medicago truncatula HOM05D001415 ORTHO05D001075 2.6e-36 154.8 76 100.0
Lalb_Chr02g0152101 Lupinus albus HOM05D001415 ORTHO05D001075 3.0e-08 61.6 42 57.1
Nn2g11570 Nelumbo nucifera HOM05D001415 ORTHO05D001075 3.0e-08 61.6 39 66.7
Nn2g13768 Nelumbo nucifera HOM05D001415 ORTHO05D001075 5.1e-08 60.8 39 64.1
Phvul.007G098400 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 5.1e-08 60.8 46 56.5
CSS0026842 Camellia sinensis var. sinensis HOM05D001415 ORTHO05D001075 8.7e-08 60.1 39 64.1
Glyma.10G122700 Glycine max HOM05D001415 ORTHO05D001075 8.7e-08 60.1 51 58.8
Potri.008G035900 Populus trichocarpa HOM05D001415 ORTHO05D001075 1.5e-07 59.3 39 64.1
Glyma.20G182300 Glycine max HOM05D001415 ORTHO05D001075 1.9e-07 58.9 39 59.0
Phvul.007G235700 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 1.9e-07 58.9 39 61.5
COL.COLO4_17147 Corchorus olitorius HOM05D001415 ORTHO05D001075 2.5e-07 58.5 49 55.1
Gohir.A05G293900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 2.5e-07 58.5 41 58.5
Gohir.D05G294600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 2.5e-07 58.5 41 58.5
Glyma.20G182200 Glycine max HOM05D001415 ORTHO05D001075 3.3e-07 58.2 46 50.0
Gorai.009G311300 Gossypium raimondii HOM05D001415 ORTHO05D001075 3.3e-07 58.2 49 55.1
Manes.10G049900 Manihot esculenta HOM05D001415 ORTHO05D001075 3.3e-07 58.2 39 56.4
Thecc.10G082100 Theobroma cacao HOM05D001415 ORTHO05D001075 3.3e-07 58.2 41 58.5
Phvul.007G098500 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 5.6e-07 57.4 39 56.4
Potri.010G226250 Populus trichocarpa HOM05D001415 ORTHO05D001075 5.6e-07 57.4 39 61.5
Glyma.10G208500 Glycine max HOM05D001415 ORTHO05D001075 9.6e-07 56.6 47 48.9
Manes.07G133164 Manihot esculenta HOM05D001415 ORTHO05D001075 9.6e-07 56.6 37 59.5
Prupe.2G209600 Prunus persica HOM05D001415 ORTHO05D001075 1.2e-06 56.2 39 59.0
arahy.Tifrunner.gnm1.ann1.CC2P36 Arachis hypogaea HOM05D001415 ORTHO05D001075 2.1e-06 55.5 50 52.0
COL.COLO4_26977 Corchorus olitorius HOM05D001415 ORTHO05D001075 2.8e-06 55.1 43 48.8
CiPaw.01G269600 Carya illinoinensis HOM05D001415 ORTHO05D001075 3.6e-06 54.7 39 53.8
Glyma.10G208400 Glycine max HOM05D001415 ORTHO05D001075 3.6e-06 54.7 39 56.4
Gohir.A10G203600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 4.7e-06 54.3 39 56.4
Gohir.D10G211700 Gossypium hirsutum HOM05D001415 ORTHO05D001075 4.7e-06 54.3 39 56.4
Gorai.011G237600 Gossypium raimondii HOM05D001415 ORTHO05D001075 4.7e-06 54.3 39 56.4
CANSAT80G1980 Cannabis sativa HOM05D001415 ORTHO05D001075 6.2e-06 53.9 35 57.1
Duzib128G1683 Durio zibethinus HOM05D001415 ORTHO05D001075 6.2e-06 53.9 39 51.3
MD07G1170600 Malus domestica HOM05D001415 ORTHO05D001075 6.2e-06 53.9 38 57.9
HPP92_012600 Vanilla planifolia HOM05D001415 ORTHO05D001075 6.2e-06 53.9 37 56.8
Aa31LG5G22210 Aethionema arabicum HOM05D001415 ORTHO05D001075 8.1e-06 53.5 37 54.1
BcaB02g09311 Brassica carinata HOM05D001415 ORTHO05D001075 8.1e-06 53.5 45 46.7
A05p08830 Brassica napus HOM05D001415 ORTHO05D001075 8.1e-06 53.5 45 46.7
BraA05t19850Z Brassica rapa HOM05D001415 ORTHO05D001075 8.1e-06 53.5 45 46.7
CiPaw.10G130800 Carya illinoinensis HOM05D001415 ORTHO05D001075 8.1e-06 53.5 39 51.3
Gohir.D09G143600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 8.1e-06 53.5 44 50.0
Gorai.006G164900 Gossypium raimondii HOM05D001415 ORTHO05D001075 8.1e-06 53.5 44 50.0
Lj1g0014030 Lotus japonicus HOM05D001415 ORTHO05D001075 8.1e-06 53.5 54 44.4


User provided reference genes

Program Settings