Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 1.6e-261 905.6 456 100.0
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 2.1e-234 815.5 457 89.3
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 4.4e-224 781.2 457 86.2
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 6.6e-212 740.7 456 82.9
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 1.9e-206 722.6 456 80.9
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 3.0e-204 715.3 456 80.0
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 9.6e-203 710.3 456 79.6
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 1.6e-202 709.5 456 79.6
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 4.6e-197 691.4 455 78.2
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 3.9e-196 688.3 455 76.9
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 3.3e-195 685.3 455 77.1
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 9.6e-187 657.1 456 74.8
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 9.6e-187 657.1 456 74.8
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 3.1e-185 652.1 423 78.0
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 1.2e-173 613.6 454 68.9
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 1.6e-173 613.2 454 68.5
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 3.5e-173 612.1 454 68.7
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 6.7e-172 607.8 454 68.3
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 8.7e-172 607.4 453 67.5
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 1.9e-171 606.3 454 68.7
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.3e-170 603.6 454 68.1
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 6.3e-170 601.3 454 67.8
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 6.9e-169 597.8 455 67.5
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 3.4e-168 595.5 452 67.7
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 3.6e-165 585.5 455 65.9
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 1.3e-164 583.6 451 64.5
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 3.9e-164 582.0 452 66.6
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 3.9e-164 582.0 452 65.3
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 8.7e-164 580.9 451 65.4
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 1.1e-163 580.5 454 65.9
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 3.3e-163 578.9 452 65.0
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 5.7e-163 578.2 451 65.0
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 7.4e-163 577.8 451 63.9
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 1.3e-162 577.0 451 63.9
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 1.6e-162 576.6 464 65.1
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 8.2e-162 574.3 449 65.0
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 3.1e-161 572.4 451 63.4
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 2.0e-160 569.7 454 65.9
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 2.6e-160 569.3 458 64.4
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 7.7e-160 567.8 458 64.2
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 7.7e-160 567.8 458 64.2
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 2.9e-159 565.8 458 64.0
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 6.5e-159 564.7 449 64.1
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 7.2e-158 561.2 452 62.6
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 2.7e-157 559.3 445 64.9
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 2.7e-157 559.3 451 64.1
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 1.4e-156 557.0 453 63.6
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 1.8e-156 556.6 427 66.3
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 8.8e-156 554.3 455 64.0
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 1.1e-155 553.9 446 63.9
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 1.5e-155 553.5 454 62.1
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 2.6e-155 552.7 455 61.1
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 3.3e-155 552.4 447 62.6
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 4.8e-154 548.5 482 58.9
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 1.5e-152 543.5 480 59.4
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 2.0e-152 543.1 459 60.3
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 2.6e-152 542.7 454 60.4
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 2.6e-152 542.7 454 59.7
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 7.7e-152 541.2 452 60.2
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 2.2e-151 539.7 462 60.8
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 7.2e-150 534.6 452 60.8
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 2.3e-148 529.6 410 66.1
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 3.3e-147 525.8 449 59.2
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 2.8e-146 522.7 452 59.7
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 1.1e-145 520.8 410 65.6
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 2.0e-144 516.5 452 57.5
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 3.8e-143 512.3 453 57.6
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 2.5e-142 509.6 453 57.8
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 5.5e-142 508.4 450 58.2
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 2.1e-141 506.5 456 59.6
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 2.7e-141 506.1 419 62.1
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 6.1e-141 505.0 473 53.9
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 8.0e-141 504.6 452 56.6
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 2.3e-140 503.1 462 57.8
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 4.0e-140 502.3 466 55.6
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 5.2e-140 501.9 445 60.4
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 5.7e-139 498.4 451 55.7
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 5.7e-139 498.4 472 54.9
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 5.7e-139 498.4 468 54.9
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 7.5e-139 498.0 473 54.8
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 4.8e-138 495.4 456 56.8
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 1.8e-137 493.4 376 67.8
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 7.7e-136 488.0 478 54.4
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 7.7e-136 488.0 461 56.2
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 2.9e-135 486.1 478 54.0
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 8.5e-135 484.6 402 61.4
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 1.2e-133 480.7 400 60.2
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 6.1e-133 478.4 435 58.4
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 1.7e-130 470.3 454 54.6
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 2.2e-130 469.9 459 55.3
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 2.2e-130 469.9 368 65.2
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 1.8e-129 466.8 448 57.6
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 3.1e-129 466.1 451 53.2
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 4.1e-129 465.7 451 56.5
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 1.2e-128 464.2 457 53.8
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 1.7e-127 460.3 401 61.6
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 2.5e-126 456.4 400 58.8
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 3.3e-126 456.1 413 57.6
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 4.2e-126 455.7 452 54.9
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 5.5e-126 455.3 452 54.2
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 9.5e-126 454.5 413 57.4
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 8.0e-125 451.4 363 65.0
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 8.9e-124 448.0 450 51.8
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 1.2e-123 447.6 401 58.6
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 7.5e-123 444.9 411 55.0
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 6.3e-122 441.8 450 51.6
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.8e-121 440.3 453 55.4
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 2.7e-120 436.4 447 51.9
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 5.0e-119 432.2 326 65.6
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 1.5e-118 430.6 448 52.5
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 3.3e-118 429.5 432 52.3
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.8e-116 423.7 494 49.6
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 1.4e-113 414.1 454 50.7
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 4.6e-112 409.1 318 65.4
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 5.0e-111 405.6 350 58.3
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 2.3e-108 396.7 403 52.1
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 8.9e-108 394.8 371 55.5
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 1.1e-105 387.9 455 49.2
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 1.1e-102 377.9 449 48.8
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 4.4e-91 339.3 453 45.7
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 1.4e-89 334.3 301 59.1
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 1.8e-84 317.4 341 50.1
Nitab4.5_0000064g0090 Nicotiana tabacum HOM05D004012 ORTHO05D004752 2.9e-82 310.1 298 52.7
Peaxi162Scf00621g00412 Petunia axillaris HOM05D004012 ORTHO05D004752 5.4e-81 305.8 304 52.6
PGSC0003DMG401004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 3.0e-79 300.1 302 52.0
Solyc04g024500.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 1.3e-77 294.7 298 51.3
Cc07_g20540 Coffea canephora HOM05D004012 ORTHO05D004752 2.0e-75 287.3 373 44.5
Nitab4.5_0005261g0010 Nicotiana tabacum HOM05D004012 ORTHO05D004752 2.0e-75 287.3 298 50.7
Oeu036288.1 Olea europaea HOM05D004012 ORTHO05D004752 5.8e-75 285.8 311 49.5
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 7.1e-73 278.9 345 41.4
Haze_19373 Corylus avellana HOM05D004012 ORTHO05D004752 4.6e-72 276.2 157 90.4
Cpa.g.sc138.55 Carica papaya HOM05D004012 ORTHO05D004752 1.5e-70 271.2 249 55.4
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 1.3e-69 268.1 505 39.6
Solyc04g024510.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 1.6e-69 267.7 157 86.6
Nitab4.5_0000064g0100 Nicotiana tabacum HOM05D004012 ORTHO05D004752 2.1e-69 267.3 156 86.5
Nitab4.5_0005261g0020 Nicotiana tabacum HOM05D004012 ORTHO05D004752 2.1e-69 267.3 156 86.5
Peaxi162Scf00621g00413 Petunia axillaris HOM05D004012 ORTHO05D004752 3.1e-68 263.5 155 86.5
SEGI_14103 Sequoiadendron giganteum HOM05D004012 ORTHO05D004752 1.6e-64 251.1 156 81.4
HPP92_005645 Vanilla planifolia HOM05D004012 ORTHO05D004752 7.4e-62 242.3 145 84.8
Ah.06g188310 Amaranthus hybridus HOM05D004012 ORTHO05D004752 8.2e-61 238.8 213 54.9
Os12g0197900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 1.3e-58 231.5 141 83.0
QL10p034897 Quercus lobata HOM05D004012 ORTHO05D004752 8.4e-58 228.8 234 50.0
PGSC0003DMG402004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 7.9e-56 222.2 133 85.7
THA.LOC104799828 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 5.1e-55 219.5 184 64.1
Lju41A56G29 Lonicera japonica HOM05D004012 ORTHO05D004752 9.7e-54 215.3 384 34.9
Lsat_1_v5_gn_2_19540 Lactuca sativa HOM05D004012 ORTHO05D004752 8.2e-53 212.2 182 62.1
HPP92_005646 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.1e-52 211.8 230 45.7
Cre17.g726800 Chlamydomonas reinhardtii HOM05D004012 ORTHO05D004752 2.0e-51 207.6 516 33.9
DCAR_015558 Daucus carota HOM05D004012 ORTHO05D004752 4.5e-51 206.5 120 85.0
BcaNung06869 Brassica carinata HOM05D004012 ORTHO05D004752 3.0e-47 193.7 132 81.1
Zm00001eb138450 Zea mays HOM05D004012 ORTHO05D004752 2.5e-46 190.7 305 37.0
Cpa.g.sc138.54 Carica papaya HOM05D004012 ORTHO05D004752 1.2e-40 171.8 99 90.9
SHI03103 Sapria himalayana HOM05D004012 ORTHO05D004752 1.4e-39 168.3 178 55.1
QL10p034885 Quercus lobata HOM05D004012 ORTHO05D000004 1.1e-38 165.2 106 79.2
SHI03102 Sapria himalayana HOM05D004012 ORTHO05D004752 9.7e-38 162.2 167 48.5
HPP92_005679 Vanilla planifolia HOM05D004012 ORTHO05D004752 9.1e-36 155.6 325 32.9
Haze_27454 Corylus avellana HOM05D004012 ORTHO05D004752 1.4e-33 148.3 140 55.7
Lju41A56T30 Lonicera japonica HOM05D004012 ORTHO05D004752 1.8e-28 131.3 143 50.3
QL10p034900 Quercus lobata HOM05D004012 ORTHO05D004752 8.5e-26 122.5 119 48.7
A03p08840 Brassica napus HOM05D004012 ORTHO05D004752 1.2e-22 112.1 68 86.8
MCO14G229 Micromonas commoda HOM05D004012 ORTHO05D004752 2.2e-21 107.8 215 35.8
VMungo0647G1024 Vigna mungo HOM05D004443 ORTHO05D005421 2.8e-21 107.5 70 74.3
Ciclev10006318m.g Citrus clementina HOM05D004012 ORTHO05D004752 9.1e-20 102.4 75 73.3
Oeu046377.1 Olea europaea HOM05D004012 ORTHO05D004752 5.0e-18 96.7 56 91.1
Actinidia12240 Actinidia chinensis HOM05D004012 ORTHO05D004752 2.1e-16 91.3 98 48.0
PRCOL_00001851 Prasinoderma coloniale HOM05D004012 ORTHO05D004752 2.0e-11 74.7 195 29.7
PSO761G0569 Papaver somniferum HOM05D004012 ORTHO05D004752 3.5e-11 73.9 56 64.3


User provided reference genes

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