Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g040815 Medicago truncatula HOM05D001817 ORTHO05D001647 2.8e-64 248.4 125 100.0
Medtr1g040845 Medicago truncatula HOM05D001817 ORTHO05D001647 2.8e-64 248.4 125 100.0
Medtr5g042350 Medicago truncatula HOM05D001817 ORTHO05D001647 7.7e-54 213.8 125 88.0
Medtr1g040785 Medicago truncatula HOM05D001817 ORTHO05D001647 7.2e-52 207.2 102 100.0
Medtr1g048300 Medicago truncatula HOM05D001817 ORTHO05D001647 5.4e-31 137.9 130 60.0
TPR.G19813 Trifolium pratense HOM05D001817 ORTHO05D001647 7.3e-28 127.5 127 58.3
Psat6g048880 Pisum sativum HOM05D001817 ORTHO05D001647 1.6e-22 109.8 131 51.9
Psat0s3990g0120 Pisum sativum HOM05D001817 ORTHO05D001647 6.6e-21 104.4 125 48.8
Medtr6g445140 Medicago truncatula HOM05D001817 ORTHO05D001647 1.6e-19 99.8 125 48.8
Glyma.10G113700 Glycine max HOM05D001817 ORTHO05D001647 2.2e-16 89.4 120 43.3
Lj5g0009014 Lotus japonicus HOM05D001817 ORTHO05D001647 1.1e-15 87.0 115 44.3
Lalb_Chr03g0036441 Lupinus albus HOM05D001817 ORTHO05D001647 3.2e-15 85.5 104 50.0
TPR.G8 Trifolium pratense HOM05D001817 ORTHO05D001647 1.6e-14 83.2 86 47.7
Glyma.10G114100 Glycine max HOM05D001817 ORTHO05D001647 4.6e-14 81.6 119 42.9
MD08G1079500 Malus domestica HOM05D001817 ORTHO05D001647 4.6e-14 81.6 112 39.3
VMungo0464G1322 Vigna mungo HOM05D001817 ORTHO05D001647 1.0e-13 80.5 124 42.7
QL07p000848 Quercus lobata HOM05D001817 ORTHO05D001647 2.3e-13 79.3 119 41.2
QL07p000880 Quercus lobata HOM05D001817 ORTHO05D001647 2.3e-13 79.3 119 41.2
VMungo0720G0118 Vigna mungo HOM05D001817 ORTHO05D001647 3.0e-13 79.0 103 45.6
arahy.Tifrunner.gnm1.ann1.H9XFHY Arachis hypogaea HOM05D001817 ORTHO05D001647 3.9e-13 78.6 115 38.3
Phvul.007G239600 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 3.9e-13 78.6 115 43.5
VMungo0464G1777 Vigna mungo HOM05D001817 ORTHO05D001647 1.1e-12 77.0 124 42.7
BcaNung03137 Brassica carinata HOM05D001817 ORTHO05D001647 2.5e-12 75.9 127 37.8
Thhalv10026845m.g Eutrema salsugineum HOM05D001817 ORTHO05D001647 2.5e-12 75.9 125 39.2
Glyma.10G271300 Glycine max HOM05D001817 ORTHO05D001647 2.5e-12 75.9 119 43.7
Prupe.1G484000 Prunus persica HOM05D001817 ORTHO05D001647 2.5e-12 75.9 112 36.6
QL12p013638 Quercus lobata HOM05D001817 ORTHO05D001647 2.5e-12 75.9 116 41.4
RcHm_v2.0_Chr6g0297461 Rosa chinensis HOM05D001817 ORTHO05D001647 2.5e-12 75.9 116 37.1
CDE05G1510 Ceratophyllum demersum HOM05D000485 ORTHO05D000341 3.3e-12 75.5 103 37.9
CDE05G3187 Ceratophyllum demersum HOM05D001817 ORTHO05D001647 3.3e-12 75.5 100 39.0
Potri.009G129400 Populus trichocarpa HOM05D001817 ORTHO05D001647 4.3e-12 75.1 104 43.3
arahy.Tifrunner.gnm1.ann1.QWA25E Arachis hypogaea HOM05D001817 ORTHO05D001647 5.6e-12 74.7 116 38.8
A01p06720 Brassica napus HOM05D001817 ORTHO05D001647 9.5e-12 73.9 127 37.0
C01p07480 Brassica napus HOM05D001817 ORTHO05D001647 9.5e-12 73.9 127 37.0
BolC1t00731H Brassica oleracea HOM05D001817 ORTHO05D001647 9.5e-12 73.9 127 37.0
MD08G1151500 Malus domestica HOM05D001817 ORTHO05D001647 1.2e-11 73.6 116 36.2
FAN15G2483 Fragaria x ananassa HOM05D000140 ORTHO05D000087 1.6e-11 73.2 117 37.6
FvH4_2g27480 Fragaria vesca HOM05D001817 ORTHO05D001647 2.1e-11 72.8 117 37.6
FAN24G1722 Fragaria x ananassa HOM05D000140 ORTHO05D000087 2.1e-11 72.8 117 37.6
A01p06210 Brassica napus HOM05D001817 ORTHO05D001647 2.8e-11 72.4 122 37.7
Glyma.18G276100 Glycine max HOM05D001817 ORTHO05D001647 2.8e-11 72.4 121 40.5
Sed0012505 Sechium edule HOM05D001817 ORTHO05D001647 4.7e-11 71.6 124 37.1
CARHR239990 Cardamine hirsuta HOM05D001817 ORTHO05D001647 6.2e-11 71.2 125 37.6
Duzib052G0237 Durio zibethinus HOM05D001817 ORTHO05D001647 6.2e-11 71.2 119 37.8
Potri.004G167900 Populus trichocarpa HOM05D001817 ORTHO05D001647 6.2e-11 71.2 117 39.3
Atru.chr7.2474 Acer truncatum HOM05D001817 ORTHO05D001647 8.1e-11 70.9 114 35.1
Prupe.1G484200 Prunus persica HOM05D001817 ORTHO05D001647 8.1e-11 70.9 131 38.2
PGSC0003DMG400004421 Solanum tuberosum HOM05D001817 ORTHO05D001647 8.1e-11 70.9 126 38.9
Glyma.13G199700 Glycine max HOM05D001817 ORTHO05D001647 1.4e-10 70.1 118 38.1
Phvul.004G057100 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 1.4e-10 70.1 124 37.9
VMungo0464G0399 Vigna mungo HOM05D001817 ORTHO05D001647 1.4e-10 70.1 105 40.0
BraA01t00588Z Brassica rapa HOM05D001817 ORTHO05D001647 2.3e-10 69.3 122 36.1
Sabra09G0098900 Salix brachista HOM05D001817 ORTHO05D001647 2.3e-10 69.3 118 39.0
HPP92_015931 Vanilla planifolia HOM05D001817 ORTHO05D001647 2.3e-10 69.3 102 38.2
Sed0003642 Sechium edule HOM05D001817 ORTHO05D001647 3.1e-10 68.9 113 38.1
Atru.chr6.250 Acer truncatum HOM05D001817 ORTHO05D001647 4.0e-10 68.6 119 36.1
C01p06850 Brassica napus HOM05D001817 ORTHO05D001647 4.0e-10 68.6 122 36.1
Haze_21486 Corylus avellana HOM05D001817 ORTHO05D001647 4.0e-10 68.6 122 38.5
Thhalv10009797m.g Eutrema salsugineum HOM05D001817 ORTHO05D001647 4.0e-10 68.6 125 35.2
BcaC09g51933 Brassica carinata HOM05D000025 ORTHO05D001647 5.2e-10 68.2 112 38.4
FAN27G3307 Fragaria x ananassa HOM05D000140 ORTHO05D000087 5.2e-10 68.2 120 36.7
HanXRQChr16g0511881 Helianthus annuus HOM05D001817 ORTHO05D001647 5.2e-10 68.2 113 36.3
Lsat_1_v5_gn_6_115781 Lactuca sativa HOM05D001817 ORTHO05D001647 5.2e-10 68.2 111 35.1
Carub.0007s0847 Capsella rubella HOM05D001817 ORTHO05D001647 6.8e-10 67.8 125 35.2
CsaV3_3G046170 Cucumis sativus L. HOM05D001817 ORTHO05D001647 6.8e-10 67.8 112 38.4
C07p59090 Brassica napus HOM05D001817 ORTHO05D001647 8.9e-10 67.4 119 35.3
BolC7t46357H Brassica oleracea HOM05D001817 ORTHO05D001647 8.9e-10 67.4 119 35.3
HanXRQChr13g0400031 Helianthus annuus HOM05D001817 ORTHO05D001647 1.2e-09 67.0 113 38.9
Lj4g0011737 Lotus japonicus HOM05D001817 ORTHO05D001647 1.2e-09 67.0 117 36.8
Hund04268 Selenicereus undatus HOM05D008125 ORTHO05D010359 1.2e-09 67.0 121 32.2
Sc03g0006290 Simmondsia chinensis HOM05D001817 ORTHO05D001647 1.2e-09 67.0 95 34.7
Sopen10g024540 Solanum pennellii HOM05D001817 ORTHO05D001647 1.2e-09 67.0 127 37.8
Thecc.02G154600 Theobroma cacao HOM05D001817 ORTHO05D001647 1.2e-09 67.0 124 33.9
VMungo0540G2413 Vigna mungo HOM05D001817 ORTHO05D001647 1.2e-09 67.0 116 39.7
arahy.Tifrunner.gnm1.ann1.J1V55D Arachis hypogaea HOM05D001817 ORTHO05D001647 1.5e-09 66.6 117 39.3
arahy.Tifrunner.gnm1.ann1.SUQM4P Arachis hypogaea HOM05D001817 ORTHO05D001647 1.5e-09 66.6 117 39.3
Carub.0007s0846 Capsella rubella HOM05D001817 ORTHO05D001647 1.5e-09 66.6 115 33.0
MELO3C003721.2 Cucumis melo HOM05D001817 ORTHO05D001647 1.5e-09 66.6 116 37.1
Lalb_Chr13g0294721 Lupinus albus HOM05D001817 ORTHO05D001647 1.5e-09 66.6 110 39.1
Medtr1g049240 Medicago truncatula HOM05D001817 ORTHO05D001647 1.5e-09 66.6 125 40.0
Sed0003760 Sechium edule HOM05D001817 ORTHO05D001647 1.5e-09 66.6 114 35.1
ClCG05G016680 Citrullus lanatus HOM05D001817 ORTHO05D001647 2.0e-09 66.2 99 38.4
ECA246G0220 Erigeron canadensis HOM05D001817 ORTHO05D001647 2.0e-09 66.2 112 33.9
QL02p021022 Quercus lobata HOM05D001817 ORTHO05D001647 2.0e-09 66.2 119 37.0
Sp7g29890 Schrenkiella parvula HOM05D001817 ORTHO05D001647 2.6e-09 65.9 125 33.6
AL7G19800 Arabidopsis lyrata HOM05D001817 ORTHO05D001647 3.4e-09 65.5 109 35.8
Ciclev10009917m.g Citrus clementina HOM05D001817 ORTHO05D001647 3.4e-09 65.5 125 36.8
COL.COLO4_18892 Corchorus olitorius HOM05D001817 ORTHO05D001647 3.4e-09 65.5 119 37.0
THA.LOC104818604 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 3.4e-09 65.5 121 33.1
THA.LOC104818610 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 3.4e-09 65.5 121 33.1
Atru.chr7.2473 Acer truncatum HOM05D001817 ORTHO05D001647 4.4e-09 65.1 124 33.9
MELO3C033004.2 Cucumis melo HOM05D001817 ORTHO05D001647 4.4e-09 65.1 124 35.5
PSO675G1843 Papaver somniferum HOM05D001817 ORTHO05D001647 4.4e-09 65.1 100 39.0
Solyc10g054677.1 Solanum lycopersicum HOM05D001817 ORTHO05D001647 4.4e-09 65.1 108 38.9
Cpa.g.sc187.6 Carica papaya HOM05D001817 ORTHO05D001647 5.8e-09 64.7 119 35.3
Lj4g0019656 Lotus japonicus HOM05D001817 ORTHO05D001647 5.8e-09 64.7 114 32.5
FvH4_2g28680 Fragaria vesca HOM05D001817 ORTHO05D001647 7.5e-09 64.3 122 36.9
Glyma.17G218100 Glycine max HOM05D001817 ORTHO05D001647 7.5e-09 64.3 115 34.8
Lsat_1_v5_gn_6_115761 Lactuca sativa HOM05D001817 ORTHO05D001647 7.5e-09 64.3 95 37.9
AT4G32090 Arabidopsis thaliana HOM05D001817 ORTHO05D001647 9.9e-09 63.9 125 34.4
BraA03t15168Z Brassica rapa HOM05D001817 ORTHO05D001647 9.9e-09 63.9 119 33.6
TWI63G1514 Tripterygium wilfordii HOM05D001817 ORTHO05D001647 9.9e-09 63.9 120 36.7
FvH4_2g28690 Fragaria vesca HOM05D001817 ORTHO05D001647 1.3e-08 63.5 115 34.8
Solyc10g054673.1 Solanum lycopersicum HOM05D001817 ORTHO05D001647 1.3e-08 63.5 108 38.9
AL7G19810 Arabidopsis lyrata HOM05D001817 ORTHO05D001647 1.7e-08 63.2 100 37.0
BcaC06g31519 Brassica carinata HOM05D001817 ORTHO05D001647 1.7e-08 63.2 120 32.5
Gohir.D13G060100 Gossypium hirsutum HOM05D001817 ORTHO05D001647 1.7e-08 63.2 119 32.8
Dinv26451 Davidia involucrata HOM05D001817 ORTHO05D001647 2.2e-08 62.8 96 38.5
Lj6g0012802 Lotus japonicus HOM05D001817 ORTHO05D001647 2.2e-08 62.8 111 34.2
Atru.chr7.2470 Acer truncatum HOM05D001817 ORTHO05D001647 2.9e-08 62.4 95 35.8
A03p61240 Brassica napus HOM05D001817 ORTHO05D001647 2.9e-08 62.4 119 32.8
CsaV3_6G045660 Cucumis sativus L. HOM05D001817 ORTHO05D001647 2.9e-08 62.4 124 34.7
Gohir.A13G061900 Gossypium hirsutum HOM05D001817 ORTHO05D001647 2.9e-08 62.4 119 32.8
Lj3g0023162 Lotus japonicus HOM05D001817 ORTHO05D001647 2.9e-08 62.4 117 33.3
BcaC09g51998 Brassica carinata HOM05D001817 ORTHO05D001647 3.7e-08 62.0 102 36.3
MD15G1128800 Malus domestica HOM05D001817 ORTHO05D001647 3.7e-08 62.0 120 35.8
Thecc.02G154500 Theobroma cacao HOM05D001817 ORTHO05D001647 3.7e-08 62.0 124 32.3
Lj6g0014356 Lotus japonicus HOM05D001817 ORTHO05D001647 4.9e-08 61.6 111 35.1
Lalb_Chr07g0186891 Lupinus albus HOM05D001817 ORTHO05D001647 4.9e-08 61.6 120 32.5
Atru.chr12.564 Acer truncatum HOM05D001817 ORTHO05D001647 6.4e-08 61.2 124 33.9
FvH4_5g25410 Fragaria vesca HOM05D001817 ORTHO05D001647 6.4e-08 61.2 124 34.7
FAN18G2855 Fragaria x ananassa HOM05D001817 ORTHO05D001647 6.4e-08 61.2 124 34.7
Glyma.07G189600 Glycine max HOM05D001817 ORTHO05D001647 6.4e-08 61.2 117 36.8
Gorai.013G068000 Gossypium raimondii HOM05D001817 ORTHO05D001647 6.4e-08 61.2 119 33.6
Lalb_Chr12g0205721 Lupinus albus HOM05D001817 ORTHO05D001647 6.4e-08 61.2 117 32.5
Phvul.006G043500 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 6.4e-08 61.2 94 36.2
Duzib150G1023 Durio zibethinus HOM05D001817 ORTHO05D001647 8.3e-08 60.8 109 34.9
Glyma.08G316300 Glycine max HOM05D001817 ORTHO05D001647 8.3e-08 60.8 115 35.7
MD15G1128900 Malus domestica HOM05D001817 ORTHO05D001647 8.3e-08 60.8 72 43.1
Eucgr.C02739 Eucalyptus grandis HOM05D001817 ORTHO05D001647 1.1e-07 60.5 116 34.5
FAN24G1684 Fragaria x ananassa HOM05D001817 ORTHO05D001647 1.1e-07 60.5 104 35.6
Medtr2g438190 Medicago truncatula HOM05D001817 ORTHO05D001647 1.1e-07 60.5 111 33.3
PSO541G2996 Papaver somniferum HOM05D001817 ORTHO05D001647 1.1e-07 60.5 114 33.3
C07p29020 Brassica napus HOM05D001817 ORTHO05D001647 1.9e-07 59.7 118 30.5
BolC7t43441H Brassica oleracea HOM05D001817 ORTHO05D001647 1.9e-07 59.7 118 30.5
CDE02G0050 Ceratophyllum demersum HOM05D001817 ORTHO05D001647 1.9e-07 59.7 122 32.8
FAN27G0609 Fragaria x ananassa HOM05D001817 ORTHO05D001647 1.9e-07 59.7 135 34.8
Glyma.10G113900 Glycine max HOM05D001817 ORTHO05D001647 1.9e-07 59.7 99 39.4
Glyma.10G186200 Glycine max HOM05D001817 ORTHO05D001647 2.4e-07 59.3 105 35.2
VMungo0331G0739 Vigna mungo HOM05D001817 ORTHO05D001647 2.4e-07 59.3 114 34.2
Lsat_1_v5_gn_6_115820 Lactuca sativa HOM05D001817 ORTHO05D001647 3.2e-07 58.9 113 34.5
Lj6g0004190 Lotus japonicus HOM05D001817 ORTHO05D001647 3.2e-07 58.9 112 33.9
MBI07_g02004_MAGBIO Magnolia biondii HOM05D001817 ORTHO05D001647 3.2e-07 58.9 100 31.0
Phvul.002G171300 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 3.2e-07 58.9 117 34.2
TWI34G0812 Tripterygium wilfordii HOM05D001817 ORTHO05D001647 3.2e-07 58.9 106 34.9
BcaC06g34407 Brassica carinata HOM05D001817 ORTHO05D001647 4.1e-07 58.5 105 32.4
Medtr8g042530 Medicago truncatula HOM05D001817 ORTHO05D001647 4.1e-07 58.5 120 35.8
VMungo0331G0458 Vigna mungo HOM05D001817 ORTHO05D001647 4.1e-07 58.5 116 34.5
arahy.Tifrunner.gnm1.ann1.DUNV2U Arachis hypogaea HOM05D001817 ORTHO05D001647 5.4e-07 58.2 117 32.5
A06p46400 Brassica napus HOM05D001817 ORTHO05D001647 5.4e-07 58.2 110 32.7
BraA06t27504Z Brassica rapa HOM05D001817 ORTHO05D001647 5.4e-07 58.2 110 32.7
FAN27G2147 Fragaria x ananassa HOM05D001817 ORTHO05D001647 5.4e-07 58.2 118 29.7
PSO675G1869 Papaver somniferum HOM05D001817 ORTHO05D001647 7.1e-07 57.8 108 31.5
Atru.chr7.2476 Acer truncatum HOM05D001817 ORTHO05D001647 9.2e-07 57.4 80 37.5
RcHm_v2.0_Chr6g0297451 Rosa chinensis HOM05D001817 ORTHO05D001647 1.2e-06 57.0 114 31.6
arahy.Tifrunner.gnm1.ann1.XI4PYL Arachis hypogaea HOM05D001817 ORTHO05D001647 1.6e-06 56.6 124 32.3
Glyma.05G150900 Glycine max HOM05D001817 ORTHO05D001647 1.6e-06 56.6 117 31.6
TAR371G0865 Trochodendron aralioides HOM05D001817 ORTHO05D001647 1.6e-06 56.6 106 33.0
Glyma.08G357100 Glycine max HOM05D001817 ORTHO05D001647 2.1e-06 56.2 112 31.2
Glyma.20G204300 Glycine max HOM05D001817 ORTHO05D001647 2.1e-06 56.2 120 35.0
Lalb_Chr21g0316231 Lupinus albus HOM05D001817 ORTHO05D001647 2.1e-06 56.2 111 35.1
Rhsim04G0092100 Rhododendron simsii HOM05D001817 ORTHO05D001647 2.1e-06 56.2 98 36.7
Sc03g0006280 Simmondsia chinensis HOM05D001817 ORTHO05D001647 2.1e-06 56.2 114 32.5
Lalb_Chr07g0186901 Lupinus albus HOM05D001817 ORTHO05D001647 2.7e-06 55.8 120 30.8
Potri.006G257600 Populus trichocarpa HOM05D001817 ORTHO05D001647 2.7e-06 55.8 108 33.3
TPR.G9069 Trifolium pratense HOM05D001817 ORTHO05D001647 2.7e-06 55.8 112 33.9
FvH4_2g28701 Fragaria vesca HOM05D001817 ORTHO05D001647 3.5e-06 55.5 120 32.5
Medtr2g063010 Medicago truncatula HOM05D001817 ORTHO05D001647 3.5e-06 55.5 113 34.5
Phvul.010G051700 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 3.5e-06 55.5 109 30.3
QL07p000821 Quercus lobata HOM05D001817 ORTHO05D001647 3.5e-06 55.5 112 33.0
THA.LOC104818605 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 3.5e-06 55.5 100 35.0
THA.LOC104818607 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 3.5e-06 55.5 100 35.0
THA.LOC104818611 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 3.5e-06 55.5 100 35.0
TWI63G0410 Tripterygium wilfordii HOM05D001817 ORTHO05D001647 3.5e-06 55.5 107 34.6
TAR622G0422 Trochodendron aralioides HOM05D001817 ORTHO05D001647 3.5e-06 55.5 104 32.7
FAN24G3294 Fragaria x ananassa HOM05D001817 ORTHO05D001647 4.6e-06 55.1 120 32.5
FvH4_2g28710 Fragaria vesca HOM05D001817 ORTHO05D001647 6.0e-06 54.7 120 32.5
Lj4g0014854 Lotus japonicus HOM05D001817 ORTHO05D001647 6.0e-06 54.7 95 32.6
arahy.Tifrunner.gnm1.ann1.E0VXY6 Arachis hypogaea HOM05D001817 ORTHO05D001647 7.8e-06 54.3 83 36.1
Migut.E01748 Erythranthe guttata HOM05D017739 ORTHO05D001647 7.8e-06 54.3 128 32.0
FAN24G2268 Fragaria x ananassa HOM05D001817 ORTHO05D001647 7.8e-06 54.3 120 32.5
Sp2g10630 Schrenkiella parvula HOM05D001817 ORTHO05D001647 7.8e-06 54.3 109 34.9


User provided reference genes

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