Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g040785 Medicago truncatula HOM05D001817 ORTHO05D001647 9.6e-59 229.9 115 100.0
Medtr1g040815 Medicago truncatula HOM05D001817 ORTHO05D001647 5.1e-52 207.6 102 100.0
Medtr1g040845 Medicago truncatula HOM05D001817 ORTHO05D001647 5.1e-52 207.6 102 100.0
Medtr5g042350 Medicago truncatula HOM05D001817 ORTHO05D001647 1.7e-44 182.6 102 88.2
Medtr1g048300 Medicago truncatula HOM05D001817 ORTHO05D001647 2.5e-27 125.6 112 62.5
TPR.G19813 Trifolium pratense HOM05D001817 ORTHO05D001647 8.2e-26 120.6 113 58.4
Psat0s3990g0120 Pisum sativum HOM05D001817 ORTHO05D001647 1.1e-19 100.1 112 50.9
Psat6g048880 Pisum sativum HOM05D001817 ORTHO05D001647 4.3e-19 98.2 112 51.8
Glyma.10G113700 Glycine max HOM05D001817 ORTHO05D001647 1.5e-16 89.7 112 43.8
Medtr6g445140 Medicago truncatula HOM05D001817 ORTHO05D001647 2.0e-16 89.4 107 50.5
Lalb_Chr03g0036441 Lupinus albus HOM05D001817 ORTHO05D001647 3.4e-16 88.6 109 48.6
Lj5g0009014 Lotus japonicus HOM05D001817 ORTHO05D001647 1.0e-15 87.0 107 45.8
Glyma.10G114100 Glycine max HOM05D001817 ORTHO05D001647 1.1e-14 83.6 112 43.8
VMungo0720G0118 Vigna mungo HOM05D001817 ORTHO05D001647 1.4e-14 83.2 109 44.0
Phvul.007G239600 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 1.6e-13 79.7 107 43.9
VMungo0464G1322 Vigna mungo HOM05D001817 ORTHO05D001647 1.6e-13 79.7 113 43.4
TPR.G8 Trifolium pratense HOM05D001817 ORTHO05D001647 2.7e-13 79.0 73 50.7
VMungo0464G1777 Vigna mungo HOM05D001817 ORTHO05D001647 6.1e-13 77.8 112 44.6
Potri.009G129400 Populus trichocarpa HOM05D001817 ORTHO05D001647 2.3e-12 75.9 96 44.8
arahy.Tifrunner.gnm1.ann1.H9XFHY Arachis hypogaea HOM05D001817 ORTHO05D001647 3.0e-12 75.5 103 38.8
MD08G1079500 Malus domestica HOM05D001817 ORTHO05D001647 8.8e-12 73.9 100 38.0
PGSC0003DMG400004421 Solanum tuberosum HOM05D001817 ORTHO05D001647 1.5e-11 73.2 114 39.5
QL07p000848 Quercus lobata HOM05D001817 ORTHO05D001647 2.0e-11 72.8 112 39.3
QL07p000880 Quercus lobata HOM05D001817 ORTHO05D001647 2.0e-11 72.8 112 39.3
arahy.Tifrunner.gnm1.ann1.QWA25E Arachis hypogaea HOM05D001817 ORTHO05D001647 4.3e-11 71.6 104 39.4
Potri.004G167900 Populus trichocarpa HOM05D001817 ORTHO05D001647 4.3e-11 71.6 109 40.4
VMungo0464G0399 Vigna mungo HOM05D001817 ORTHO05D001647 4.3e-11 71.6 94 41.5
Atru.chr7.2474 Acer truncatum HOM05D001817 ORTHO05D001647 5.7e-11 71.2 102 35.3
Glyma.10G271300 Glycine max HOM05D001817 ORTHO05D001647 5.7e-11 71.2 109 43.1
Thhalv10026845m.g Eutrema salsugineum HOM05D001817 ORTHO05D001647 9.7e-11 70.5 112 39.3
Sed0003642 Sechium edule HOM05D001817 ORTHO05D001647 9.7e-11 70.5 104 38.5
Phvul.004G057100 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 1.3e-10 70.1 112 39.3
Prupe.1G484000 Prunus persica HOM05D001817 ORTHO05D001647 1.3e-10 70.1 100 37.0
BcaNung03137 Brassica carinata HOM05D001817 ORTHO05D001647 1.7e-10 69.7 112 38.4
Prupe.1G484200 Prunus persica HOM05D001817 ORTHO05D001647 1.7e-10 69.7 118 39.0
Sabra09G0098900 Salix brachista HOM05D001817 ORTHO05D001647 1.7e-10 69.7 110 40.0
QL12p013638 Quercus lobata HOM05D001817 ORTHO05D001647 2.2e-10 69.3 109 39.4
Sopen10g024540 Solanum pennellii HOM05D001817 ORTHO05D001647 2.2e-10 69.3 115 38.3
CsaV3_3G046170 Cucumis sativus L. HOM05D001817 ORTHO05D001647 2.8e-10 68.9 102 40.2
Medtr1g049240 Medicago truncatula HOM05D001817 ORTHO05D001647 2.8e-10 68.9 112 40.2
RcHm_v2.0_Chr6g0297461 Rosa chinensis HOM05D001817 ORTHO05D001647 2.8e-10 68.9 109 33.9
Solyc10g054677.1 Solanum lycopersicum HOM05D001817 ORTHO05D001647 2.8e-10 68.9 114 37.7
ClCG05G016680 Citrullus lanatus HOM05D001817 ORTHO05D001647 3.7e-10 68.6 103 37.9
MELO3C003721.2 Cucumis melo HOM05D001817 ORTHO05D001647 4.8e-10 68.2 106 38.7
Sc03g0006290 Simmondsia chinensis HOM05D001817 ORTHO05D001647 4.8e-10 68.2 99 34.3
A01p06720 Brassica napus HOM05D001817 ORTHO05D001647 6.3e-10 67.8 112 37.5
C01p07480 Brassica napus HOM05D001817 ORTHO05D001647 6.3e-10 67.8 112 37.5
BolC1t00731H Brassica oleracea HOM05D001817 ORTHO05D001647 6.3e-10 67.8 112 37.5
HanXRQChr13g0400031 Helianthus annuus HOM05D001817 ORTHO05D001647 8.2e-10 67.4 106 38.7
Solyc10g054673.1 Solanum lycopersicum HOM05D001817 ORTHO05D001647 8.2e-10 67.4 114 37.7
CDE05G1510 Ceratophyllum demersum HOM05D000485 ORTHO05D000341 1.1e-09 67.0 86 39.5
COL.COLO4_18892 Corchorus olitorius HOM05D001817 ORTHO05D001647 1.1e-09 67.0 108 38.0
C07p59090 Brassica napus HOM05D001817 ORTHO05D001647 1.4e-09 66.6 113 35.4
BolC7t46357H Brassica oleracea HOM05D001817 ORTHO05D001647 1.4e-09 66.6 113 35.4
Haze_21486 Corylus avellana HOM05D001817 ORTHO05D001647 1.4e-09 66.6 115 38.3
FAN24G1684 Fragaria x ananassa HOM05D001817 ORTHO05D001647 1.4e-09 66.6 114 35.1
HanXRQChr16g0511881 Helianthus annuus HOM05D001817 ORTHO05D001647 1.4e-09 66.6 106 35.8
Sed0012505 Sechium edule HOM05D001817 ORTHO05D001647 1.4e-09 66.6 107 38.3
CDE05G3187 Ceratophyllum demersum HOM05D001817 ORTHO05D001647 1.8e-09 66.2 88 39.8
Lsat_1_v5_gn_6_115781 Lactuca sativa HOM05D001817 ORTHO05D001647 1.8e-09 66.2 104 34.6
arahy.Tifrunner.gnm1.ann1.J1V55D Arachis hypogaea HOM05D001817 ORTHO05D001647 2.4e-09 65.9 108 40.7
arahy.Tifrunner.gnm1.ann1.SUQM4P Arachis hypogaea HOM05D001817 ORTHO05D001647 2.4e-09 65.9 108 40.7
CARHR239990 Cardamine hirsuta HOM05D001817 ORTHO05D001647 2.4e-09 65.9 112 38.4
MD08G1151500 Malus domestica HOM05D001817 ORTHO05D001647 2.4e-09 65.9 104 34.6
Atru.chr7.2473 Acer truncatum HOM05D001817 ORTHO05D001647 3.1e-09 65.5 112 33.9
BcaC09g51933 Brassica carinata HOM05D000025 ORTHO05D001647 4.1e-09 65.1 94 39.4
A01p06210 Brassica napus HOM05D001817 ORTHO05D001647 4.1e-09 65.1 107 37.4
Glyma.18G276100 Glycine max HOM05D001817 ORTHO05D001647 4.1e-09 65.1 108 40.7
QL02p021022 Quercus lobata HOM05D001817 ORTHO05D001647 4.1e-09 65.1 107 38.3
Hund04268 Selenicereus undatus HOM05D008125 ORTHO05D010359 4.1e-09 65.1 107 33.6
Atru.chr6.250 Acer truncatum HOM05D001817 ORTHO05D001647 5.3e-09 64.7 117 35.0
ECA246G0220 Erigeron canadensis HOM05D001817 ORTHO05D001647 5.3e-09 64.7 105 33.3
VMungo0540G2413 Vigna mungo HOM05D001817 ORTHO05D001647 5.3e-09 64.7 108 38.9
Duzib052G0237 Durio zibethinus HOM05D001817 ORTHO05D001647 6.9e-09 64.3 112 35.7
Glyma.13G199700 Glycine max HOM05D001817 ORTHO05D001647 6.9e-09 64.3 105 38.1
Duzib150G1023 Durio zibethinus HOM05D001817 ORTHO05D001647 1.2e-08 63.5 101 36.6
Sed0003760 Sechium edule HOM05D001817 ORTHO05D001647 1.2e-08 63.5 102 35.3
Thecc.02G154600 Theobroma cacao HOM05D001817 ORTHO05D001647 1.2e-08 63.5 112 33.0
BraA01t00588Z Brassica rapa HOM05D001817 ORTHO05D001647 1.5e-08 63.2 107 36.4
BraA03t15168Z Brassica rapa HOM05D001817 ORTHO05D001647 1.5e-08 63.2 113 33.6
Carub.0007s0846 Capsella rubella HOM05D001817 ORTHO05D001647 1.5e-08 63.2 102 34.3
Carub.0007s0847 Capsella rubella HOM05D001817 ORTHO05D001647 1.5e-08 63.2 116 32.8
Thhalv10009797m.g Eutrema salsugineum HOM05D001817 ORTHO05D001647 1.5e-08 63.2 112 35.7
Atru.chr7.2470 Acer truncatum HOM05D001817 ORTHO05D001647 2.0e-08 62.8 88 36.4
Dinv26451 Davidia involucrata HOM05D001817 ORTHO05D001647 2.0e-08 62.8 96 38.5
FAN27G0609 Fragaria x ananassa HOM05D001817 ORTHO05D001647 2.0e-08 62.8 113 35.4
TWI63G1514 Tripterygium wilfordii HOM05D001817 ORTHO05D001647 2.0e-08 62.8 111 36.0
BcaC09g51998 Brassica carinata HOM05D001817 ORTHO05D001647 2.6e-08 62.4 107 36.4
C01p06850 Brassica napus HOM05D001817 ORTHO05D001647 2.6e-08 62.4 107 36.4
CDE02G0050 Ceratophyllum demersum HOM05D001817 ORTHO05D001647 3.4e-08 62.0 108 34.3
Eucgr.C02739 Eucalyptus grandis HOM05D001817 ORTHO05D001647 3.4e-08 62.0 108 36.1
Lsat_1_v5_gn_6_115761 Lactuca sativa HOM05D001817 ORTHO05D001647 3.4e-08 62.0 88 36.4
A03p61240 Brassica napus HOM05D001817 ORTHO05D001647 4.5e-08 61.6 113 32.7
FAN27G3307 Fragaria x ananassa HOM05D000140 ORTHO05D000087 4.5e-08 61.6 113 34.5
Sp7g29890 Schrenkiella parvula HOM05D001817 ORTHO05D001647 4.5e-08 61.6 119 31.9
Cpa.g.sc187.6 Carica papaya HOM05D001817 ORTHO05D001647 5.9e-08 61.2 112 33.0
Phvul.006G043500 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 5.9e-08 61.2 87 35.6
TAR371G0865 Trochodendron aralioides HOM05D001817 ORTHO05D001647 5.9e-08 61.2 113 32.7
Lj4g0011737 Lotus japonicus HOM05D001817 ORTHO05D001647 7.7e-08 60.8 104 35.6
Lalb_Chr13g0294721 Lupinus albus HOM05D001817 ORTHO05D001647 7.7e-08 60.8 98 39.8
MD15G1128900 Malus domestica HOM05D001817 ORTHO05D001647 7.7e-08 60.8 72 43.1
TWI34G0812 Tripterygium wilfordii HOM05D001817 ORTHO05D001647 7.7e-08 60.8 98 35.7
TAR622G0422 Trochodendron aralioides HOM05D001817 ORTHO05D001647 1.0e-07 60.5 94 35.1
FvH4_2g28690 Fragaria vesca HOM05D001817 ORTHO05D001647 1.3e-07 60.1 109 33.0
THA.LOC104818604 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 1.3e-07 60.1 112 30.4
THA.LOC104818610 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 1.3e-07 60.1 112 30.4
AL7G19800 Arabidopsis lyrata HOM05D001817 ORTHO05D001647 1.7e-07 59.7 96 36.5
AT4G32090 Arabidopsis thaliana HOM05D001817 ORTHO05D001647 1.7e-07 59.7 119 32.8
Lj3g0023162 Lotus japonicus HOM05D001817 ORTHO05D001647 1.7e-07 59.7 105 32.4
HPP92_015931 Vanilla planifolia HOM05D001817 ORTHO05D001647 1.7e-07 59.7 85 37.6
FvH4_2g28680 Fragaria vesca HOM05D001817 ORTHO05D001647 2.2e-07 59.3 108 37.0
Lsat_1_v5_gn_6_115820 Lactuca sativa HOM05D001817 ORTHO05D001647 2.2e-07 59.3 106 34.0
Lj4g0019656 Lotus japonicus HOM05D001817 ORTHO05D001647 2.2e-07 59.3 102 33.3
TAR622G1058 Trochodendron aralioides HOM05D001817 ORTHO05D001647 2.2e-07 59.3 113 32.7
BcaC06g31519 Brassica carinata HOM05D001817 ORTHO05D001647 3.8e-07 58.5 108 32.4
Ciclev10009917m.g Citrus clementina HOM05D001817 ORTHO05D001647 3.8e-07 58.5 113 34.5
FAN27G2147 Fragaria x ananassa HOM05D001817 ORTHO05D001647 3.8e-07 58.5 111 29.7
Glyma.17G218100 Glycine max HOM05D001817 ORTHO05D001647 3.8e-07 58.5 102 34.3
Thecc.02G154500 Theobroma cacao HOM05D001817 ORTHO05D001647 3.8e-07 58.5 112 31.2
Glyma.08G316300 Glycine max HOM05D001817 ORTHO05D001647 5.0e-07 58.2 103 35.0
PSO541G2996 Papaver somniferum HOM05D001817 ORTHO05D001647 5.0e-07 58.2 106 33.0
AL7G19810 Arabidopsis lyrata HOM05D001817 ORTHO05D001647 6.5e-07 57.8 91 34.1
Lalb_Chr12g0205721 Lupinus albus HOM05D001817 ORTHO05D001647 6.5e-07 57.8 100 34.0
THA.LOC104818605 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 6.5e-07 57.8 110 33.6
THA.LOC104818607 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 6.5e-07 57.8 110 33.6
THA.LOC104818611 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 6.5e-07 57.8 110 33.6
Atru.chr12.564 Acer truncatum HOM05D001817 ORTHO05D001647 8.5e-07 57.4 112 33.0
Atru.chr7.2476 Acer truncatum HOM05D001817 ORTHO05D001647 8.5e-07 57.4 73 38.4
MD15G1128800 Malus domestica HOM05D001817 ORTHO05D001647 8.5e-07 57.4 113 34.5
TAR622G0534 Trochodendron aralioides HOM05D001817 ORTHO05D001647 8.5e-07 57.4 113 32.7
Glyma.07G189600 Glycine max HOM05D001817 ORTHO05D001647 1.1e-06 57.0 103 37.9
Gohir.D13G060100 Gossypium hirsutum HOM05D001817 ORTHO05D001647 1.1e-06 57.0 112 30.4
PSO675G1843 Papaver somniferum HOM05D001817 ORTHO05D001647 1.1e-06 57.0 88 37.5
C07p29020 Brassica napus HOM05D001817 ORTHO05D001647 1.4e-06 56.6 105 29.5
BolC7t43441H Brassica oleracea HOM05D001817 ORTHO05D001647 1.4e-06 56.6 105 29.5
MELO3C033004.2 Cucumis melo HOM05D001817 ORTHO05D001647 1.4e-06 56.6 107 35.5
Glyma.10G113900 Glycine max HOM05D001817 ORTHO05D001647 1.4e-06 56.6 82 40.2
PSO675G1869 Papaver somniferum HOM05D001817 ORTHO05D001647 1.4e-06 56.6 100 32.0
Sp2g10630 Schrenkiella parvula HOM05D001817 ORTHO05D001647 1.4e-06 56.6 107 34.6
CDE06G0004 Ceratophyllum demersum HOM05D001817 ORTHO05D001647 1.9e-06 56.2 90 31.1
Gohir.A13G061900 Gossypium hirsutum HOM05D001817 ORTHO05D001647 1.9e-06 56.2 112 30.4
Lj6g0012802 Lotus japonicus HOM05D001817 ORTHO05D001647 1.9e-06 56.2 99 33.3
RcHm_v2.0_Chr6g0297451 Rosa chinensis HOM05D001817 ORTHO05D001647 1.9e-06 56.2 105 30.5
CsaV3_6G045660 Cucumis sativus L. HOM05D001817 ORTHO05D001647 2.5e-06 55.8 109 35.8
Gohir.A07G029700 Gossypium hirsutum HOM05D001817 ORTHO05D001647 2.5e-06 55.8 71 38.0
Rhsim04G0092100 Rhododendron simsii HOM05D001817 ORTHO05D001647 2.5e-06 55.8 90 38.9
BcaC06g34407 Brassica carinata HOM05D001817 ORTHO05D001647 3.2e-06 55.5 92 31.5
A06p46400 Brassica napus HOM05D001817 ORTHO05D001647 3.2e-06 55.5 108 30.6
BraA06t27504Z Brassica rapa HOM05D001817 ORTHO05D001647 3.2e-06 55.5 108 30.6
FvH4_2g28701 Fragaria vesca HOM05D001817 ORTHO05D001647 3.2e-06 55.5 113 32.7
FvH4_5g25410 Fragaria vesca HOM05D001817 ORTHO05D001647 3.2e-06 55.5 112 33.9
FAN18G2855 Fragaria x ananassa HOM05D001817 ORTHO05D001647 3.2e-06 55.5 112 33.9
Lj6g0014356 Lotus japonicus HOM05D001817 ORTHO05D001647 3.2e-06 55.5 99 34.3
Lalb_Chr07g0186891 Lupinus albus HOM05D001817 ORTHO05D001647 3.2e-06 55.5 116 31.0
FAN24G3294 Fragaria x ananassa HOM05D001817 ORTHO05D001647 4.2e-06 55.1 113 32.7
Gorai.013G068000 Gossypium raimondii HOM05D001817 ORTHO05D001647 4.2e-06 55.1 112 31.2
Lalb_Chr07g0186901 Lupinus albus HOM05D001817 ORTHO05D001647 5.5e-06 54.7 97 32.0
arahy.Tifrunner.gnm1.ann1.E0VXY6 Arachis hypogaea HOM05D001817 ORTHO05D001647 7.2e-06 54.3 81 35.8
arahy.Tifrunner.gnm1.ann1.DUNV2U Arachis hypogaea HOM05D001817 ORTHO05D001647 9.4e-06 53.9 108 31.5
MBI07_g02004_MAGBIO Magnolia biondii HOM05D001817 ORTHO05D001647 9.4e-06 53.9 85 31.8
Medtr2g438190 Medicago truncatula HOM05D001817 ORTHO05D001647 9.4e-06 53.9 98 32.7
Potri.006G257600 Populus trichocarpa HOM05D001817 ORTHO05D001647 9.4e-06 53.9 101 32.7
RcHm_v2.0_Chr6g0297491 Rosa chinensis HOM05D001817 ORTHO05D001647 9.4e-06 53.9 71 40.8
Sc03g0006280 Simmondsia chinensis HOM05D001817 ORTHO05D001647 9.4e-06 53.9 106 31.1
VMungo0331G0739 Vigna mungo HOM05D001817 ORTHO05D001647 9.4e-06 53.9 107 31.8


User provided reference genes

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