Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g040435 Medicago truncatula HOM05D007216 ORTHO05D009261 1.1e-144 516.5 258 100.0
Psat6g102240 Pisum sativum HOM05D007216 ORTHO05D009261 9.5e-99 364.0 253 76.3
TPR.G22479 Trifolium pratense HOM05D007216 ORTHO05D009261 6.8e-89 331.3 256 70.7
Glyma.02G000800 Glycine max HOM05D007216 ORTHO05D009261 9.6e-75 284.3 265 60.0
Lalb_Chr03g0037861 Lupinus albus HOM05D007216 ORTHO05D009261 1.6e-66 256.9 228 61.8
Phvul.007G280700 Phaseolus vulgaris HOM05D007216 ORTHO05D009261 2.2e-47 193.4 152 67.1
QL06p015626 Quercus lobata HOM05D007216 ORTHO05D009261 2.2e-47 193.4 251 47.0
CiPaw.01G190600 Carya illinoinensis HOM05D007216 ORTHO05D009261 7.9e-45 184.9 250 44.4
QL06p015621 Quercus lobata HOM05D007216 ORTHO05D009261 1.5e-43 180.6 225 47.6
Ciclev10005777m.g Citrus clementina HOM05D007216 ORTHO05D009261 1.1e-41 174.5 250 44.0
CiPaw.02G116600 Carya illinoinensis HOM05D007216 ORTHO05D009261 2.0e-40 170.2 254 42.1
Cfa008380 Carpinus fangiana HOM05D007216 ORTHO05D009261 5.9e-40 168.7 247 41.7
Duzib151G0028 Durio zibethinus HOM05D007216 ORTHO05D009261 5.9e-40 168.7 245 42.0
Duzib151G0820 Durio zibethinus HOM05D007216 ORTHO05D009261 5.9e-40 168.7 245 42.0
Thecc.04G245800 Theobroma cacao HOM05D007216 ORTHO05D009261 5.9e-40 168.7 245 42.4
RcHm_v2.0_Chr4g0390311 Rosa chinensis HOM05D007216 ORTHO05D009261 1.7e-39 167.2 251 43.8
Haze_11297 Corylus avellana HOM05D007216 ORTHO05D009261 6.5e-39 165.2 245 41.2
Haze_11299 Corylus avellana HOM05D007216 ORTHO05D009261 8.5e-39 164.9 245 41.2
FvH4_4g02610 Fragaria vesca HOM05D007216 ORTHO05D009261 4.2e-38 162.5 251 41.8
Duzib052G0756 Durio zibethinus HOM05D007216 ORTHO05D009261 2.7e-37 159.8 246 38.6
Prupe.1G030500 Prunus persica HOM05D007216 ORTHO05D009261 6.1e-37 158.7 235 40.4
Actinidia08446 Actinidia chinensis HOM05D007216 ORTHO05D009261 3.9e-36 156.0 249 41.4
Atru.chr4.2233 Acer truncatum HOM05D007216 ORTHO05D009261 1.1e-35 154.5 246 42.3
Eucgr.H00196 Eucalyptus grandis HOM05D007216 ORTHO05D009261 1.5e-35 154.1 249 39.4
COL.COLO4_15786 Corchorus olitorius HOM05D007216 ORTHO05D009261 5.7e-35 152.1 254 36.6
Actinidia05467 Actinidia chinensis HOM05D007216 ORTHO05D009261 9.7e-35 151.4 251 40.6
Cc03_g04820 Coffea canephora HOM05D007216 ORTHO05D009261 1.3e-34 151.0 211 45.0
MD13G1206900 Malus domestica HOM05D007216 ORTHO05D009261 2.2e-34 150.2 215 43.3
Potri.010G077000 Populus trichocarpa HOM05D007216 ORTHO05D009261 3.7e-34 149.4 234 39.3
CSS0019068 Camellia sinensis var. sinensis HOM05D007216 ORTHO05D009261 1.4e-33 147.5 196 45.9
FAN12G1817 Fragaria x ananassa HOM05D007216 ORTHO05D009261 1.4e-33 147.5 227 41.0
Manes.03G169100 Manihot esculenta HOM05D007216 ORTHO05D009261 1.8e-33 147.1 237 40.1
Duzib212G0514 Durio zibethinus HOM05D007216 ORTHO05D009261 1.2e-32 144.4 225 39.1
Sabra10G0031800 Salix brachista HOM05D007216 ORTHO05D009261 1.2e-32 144.4 234 37.6
TAR365G0907 Trochodendron aralioides HOM05D007216 ORTHO05D009261 2.6e-32 143.3 247 40.1
MD16G1208400 Malus domestica HOM05D007216 ORTHO05D009261 4.5e-32 142.5 251 37.5
Gorai.006G246400 Gossypium raimondii HOM05D007216 ORTHO05D009261 2.9e-31 139.8 238 39.5
Solyc09g083360.3 Solanum lycopersicum HOM05D007216 ORTHO05D009261 2.9e-31 139.8 211 39.8
Sopen09g032280 Solanum pennellii HOM05D007216 ORTHO05D009261 2.9e-31 139.8 211 39.8
THA.LOC104827376 Tarenaya hassleriana HOM05D007216 ORTHO05D009261 3.8e-31 139.4 184 45.7
Cpa.g.sc58.45 Carica papaya HOM05D007216 ORTHO05D009261 6.5e-31 138.7 217 41.5
Potri.008G161800 Populus trichocarpa HOM05D007216 ORTHO05D009261 6.5e-31 138.7 200 42.5
Gohir.A09G222900 Gossypium hirsutum HOM05D007216 ORTHO05D009261 3.2e-30 136.3 238 37.8
BraA09t37658Z Brassica rapa HOM05D007216 ORTHO05D009261 4.2e-30 136.0 242 37.6
Oeu008788.2 Olea europaea HOM05D007216 ORTHO05D009261 4.2e-30 136.0 218 41.7
PGR031G3332 Punica granatum HOM05D007216 ORTHO05D009261 4.2e-30 136.0 244 37.3
BcaB07g31004 Brassica carinata HOM05D007216 ORTHO05D009261 5.5e-30 135.6 240 38.3
BcaC06g31685 Brassica carinata HOM05D007216 ORTHO05D009261 7.2e-30 135.2 213 39.9
BcaC04g21907 Brassica carinata HOM05D007216 ORTHO05D009261 9.4e-30 134.8 243 37.4
Eucgr.J01563 Eucalyptus grandis HOM05D007216 ORTHO05D009261 1.6e-29 134.0 186 43.5
BcaC06g34638 Brassica carinata HOM05D007216 ORTHO05D009261 2.1e-29 133.7 214 40.7
C07p26230 Brassica napus HOM05D007216 ORTHO05D009261 2.1e-29 133.7 214 40.7
BolC7t43151H Brassica oleracea HOM05D007216 ORTHO05D009261 2.1e-29 133.7 214 40.7
CANSAT78G2280 Cannabis sativa HOM05D007216 ORTHO05D009261 2.1e-29 133.7 255 35.7
TWI73G0753 Tripterygium wilfordii HOM05D007216 ORTHO05D009261 7.9e-29 131.7 213 41.3
Thhalv10003353m.g Eutrema salsugineum HOM05D007216 ORTHO05D009261 1.0e-28 131.3 210 39.5
Rhsim02G0032900 Rhododendron simsii HOM05D007216 ORTHO05D009261 1.0e-28 131.3 187 44.4
Sed0000846 Sechium edule HOM05D007216 ORTHO05D009261 2.3e-28 130.2 220 36.4
Aa31LG5G3580 Aethionema arabicum HOM05D007216 ORTHO05D009261 6.7e-28 128.6 205 38.0
AL390U10010 Arabidopsis lyrata HOM05D007216 ORTHO05D009261 6.7e-28 128.6 218 39.0
A06p47770 Brassica napus HOM05D007216 ORTHO05D009261 2.0e-27 127.1 207 40.6
Gohir.D09G224900 Gossypium hirsutum HOM05D007216 ORTHO05D009261 2.6e-27 126.7 173 44.5
Peaxi162Scf00813g00118 Petunia axillaris HOM05D007216 ORTHO05D009261 2.6e-27 126.7 188 41.5
TWI09G1088 Tripterygium wilfordii HOM05D007216 ORTHO05D009261 3.3e-27 126.3 240 37.1
A09p20520 Brassica napus HOM05D007216 ORTHO05D009261 4.4e-27 125.9 251 35.5
Sabra08G0123600 Salix brachista HOM05D007216 ORTHO05D009261 4.4e-27 125.9 232 40.5
DCAR_027275 Daucus carota HOM05D007216 ORTHO05D009261 9.7e-27 124.8 226 38.5
CARHR006300 Cardamine hirsuta HOM05D007216 ORTHO05D009261 1.7e-26 124.0 188 38.8
Nn3g19525 Nelumbo nucifera HOM05D007216 ORTHO05D009261 2.2e-26 123.6 210 41.4
GSVIVG01018111001 Vitis vinifera HOM05D007216 ORTHO05D009261 3.7e-26 122.9 160 43.1
CsaV3_2G013060 Cucumis sativus L. HOM05D007216 ORTHO05D009261 6.3e-26 122.1 280 32.1
MSTRG.4097 Avicennia marina HOM05D007216 ORTHO05D009261 8.2e-26 121.7 245 34.7
Nn1g02593 Nelumbo nucifera HOM05D007216 ORTHO05D009261 1.4e-25 120.9 217 38.2
THA.LOC104801097 Tarenaya hassleriana HOM05D007216 ORTHO05D009261 2.4e-25 120.2 266 34.2
Dinv29914 Davidia involucrata HOM05D007216 ORTHO05D009261 3.1e-25 119.8 155 47.1
BolC9t55498H Brassica oleracea HOM05D007216 ORTHO05D009261 4.1e-25 119.4 244 35.7
Migut.G00433 Erythranthe guttata HOM05D007216 ORTHO05D009261 2.0e-24 117.1 223 37.2
Carub.0008s0499 Capsella rubella HOM05D007216 ORTHO05D009261 2.6e-24 116.7 241 34.0
MELO3C026778.2 Cucumis melo HOM05D007216 ORTHO05D009261 2.6e-24 116.7 279 31.5
ClCG06G006720 Citrullus lanatus HOM05D007216 ORTHO05D009261 7.7e-24 115.2 234 33.8
Sed0019243 Sechium edule HOM05D007216 ORTHO05D009261 2.2e-23 113.6 220 33.6
C09p25930 Brassica napus HOM05D007216 ORTHO05D009261 2.9e-23 113.2 223 35.9
Sed0021571 Sechium edule HOM05D007216 ORTHO05D009261 3.8e-23 112.8 262 30.9
Sc13g0004990 Simmondsia chinensis HOM05D007216 ORTHO05D009261 6.5e-23 112.1 220 38.2
Gorai.005G046700 Gossypium raimondii HOM05D007216 ORTHO05D009261 1.1e-22 111.3 243 36.2
SpUn0744_0010 Schrenkiella parvula HOM05D007216 ORTHO05D009261 1.1e-22 111.3 185 37.3
TAR636G2640 Trochodendron aralioides HOM05D007216 ORTHO05D009261 2.5e-22 110.2 206 36.4
ATR0665G548 Amborella trichopoda HOM05D007216 ORTHO05D009261 3.2e-22 109.8 183 36.6
Gohir.D02G042400 Gossypium hirsutum HOM05D007216 ORTHO05D009261 7.2e-22 108.6 243 35.8
BraA06t27645Z Brassica rapa HOM05D007216 ORTHO05D009261 8.0e-21 105.1 187 39.0
DCAR_027276 Daucus carota HOM05D007216 ORTHO05D009261 8.0e-21 105.1 200 35.5
AT5G43650 Arabidopsis thaliana HOM05D007216 ORTHO05D009261 1.0e-20 104.8 187 36.4
Nitab4.5_0004798g0070 Nicotiana tabacum HOM05D007216 ORTHO05D009261 1.8e-20 104.0 251 33.1
Gohir.A02G035500 Gossypium hirsutum HOM05D007216 ORTHO05D009261 6.7e-20 102.1 181 38.7
Lj6C656T7 Lonicera japonica HOM05D007216 ORTHO05D009261 1.7e-18 97.4 194 36.6
Hma1.2p1_0893F.1_g233480 Hydrangea macrophylla HOM05D007216 ORTHO05D009261 1.4e-17 94.4 97 53.6
Os03g0741100 Oryza sativa ssp. japonica HOM05D007216 ORTHO05D009261 2.4e-17 93.6 157 35.7
Zm00001eb056760 Zea mays HOM05D007216 ORTHO05D009261 3.1e-17 93.2 176 34.1
CAN.G1007.15 Capsicum annuum HOM05D007216 ORTHO05D009261 9.1e-17 91.7 120 43.3
Nitab4.5_0000525g0160 Nicotiana tabacum HOM05D007216 ORTHO05D009261 9.4e-14 81.6 246 30.1
Dinv44631 Davidia involucrata HOM05D007216 ORTHO05D009261 2.7e-13 80.1 115 43.5
Aqoxy5G00327 Aquilegia oxysepala HOM05D007216 ORTHO05D009261 1.4e-12 77.8 113 43.4
SpUn0429_0010 Schrenkiella parvula HOM05D007216 ORTHO05D009261 8.8e-12 75.1 182 31.3
HPP92_027840 Vanilla planifolia HOM05D007216 ORTHO05D009261 1.5e-11 74.3 248 27.4
HPP92_023468 Vanilla planifolia HOM05D007216 ORTHO05D009261 2.2e-10 70.5 250 26.0
HPP92_023463 Vanilla planifolia HOM05D007216 ORTHO05D009261 4.1e-09 66.2 247 25.9
Peaxi162Scf00028g00036 Petunia axillaris HOM05D004059 ORTHO05D004591 5.9e-08 62.4 167 31.1
Zm00001eb370010 Zea mays HOM05D007216 ORTHO05D049898 2.9e-07 60.1 214 26.6
COL.COLO4_18190 Corchorus olitorius HOM05D004059 ORTHO05D004591 3.2e-06 56.6 237 27.4
vmacro17254 Vaccinium macrocarpon HOM05D004059 ORTHO05D004591 5.5e-06 55.8 152 30.9


User provided reference genes

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