Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g033840 Medicago truncatula HOM05D007280 ORTHO05D009108 4.3e-243 844.7 421 100.0
Psat6g095680 Pisum sativum HOM05D007280 ORTHO05D009108 7.0e-193 677.9 414 82.6
TPR.G35854 Trifolium pratense HOM05D007280 ORTHO05D009108 1.0e-191 674.1 416 82.5
Ca_12458_v3 Cicer arietinum L. HOM05D007280 ORTHO05D009108 1.1e-174 617.5 420 76.0
Phvul.003G013000 Phaseolus vulgaris HOM05D007280 ORTHO05D009108 4.3e-158 562.4 418 67.5
Lj2g0005518 Lotus japonicus HOM05D007280 ORTHO05D009108 1.5e-155 553.9 420 69.8
VMungo1215G2162 Vigna mungo HOM05D007280 ORTHO05D009108 1.7e-154 550.4 411 68.1
Lalb_Chr17g0338341 Lupinus albus HOM05D007280 ORTHO05D009108 4.4e-139 499.2 412 64.6
Glyma.20G010600 Glycine max HOM05D007280 ORTHO05D009108 2.9e-138 496.5 400 67.2
Haze_01575 Corylus avellana HOM05D007280 ORTHO05D009108 1.0e-111 408.3 414 53.4
Hma1.2p1_0319F.1_g123900 Hydrangea macrophylla HOM05D007280 ORTHO05D009108 1.8e-111 407.5 430 51.4
Potri.010G098700 Populus trichocarpa HOM05D007280 ORTHO05D009108 3.9e-111 406.4 418 52.2
Glyma.07G177100 Glycine max HOM05D007280 ORTHO05D009108 5.1e-111 406.0 329 65.0
Thecc.09G239200 Theobroma cacao HOM05D007280 ORTHO05D009108 2.8e-109 400.2 411 51.1
Nn4g24834 Nelumbo nucifera HOM05D007280 ORTHO05D009108 6.9e-108 395.6 432 48.4
Cfa015100 Carpinus fangiana HOM05D007280 ORTHO05D009108 1.5e-107 394.4 406 52.7
Prupe.1G342100 Prunus persica HOM05D007280 ORTHO05D009108 1.0e-106 391.7 438 50.2
Lj3P855T51 Lonicera japonica HOM05D007280 ORTHO05D009108 3.6e-104 383.3 369 50.9
Sabra08G0108200 Salix brachista HOM05D007280 ORTHO05D009108 7.9e-104 382.1 411 50.1
Cpa.g.sc2.97 Carica papaya HOM05D007280 ORTHO05D009108 1.4e-103 381.3 385 51.9
Cc11_g02870 Coffea canephora HOM05D007280 ORTHO05D009108 6.7e-103 379.0 433 47.8
Peaxi162Scf00329g00097 Petunia axillaris HOM05D007280 ORTHO05D009108 6.3e-101 372.5 396 47.7
CSS0013384 Camellia sinensis var. sinensis HOM05D007280 ORTHO05D009108 1.8e-100 370.9 445 47.2
DCAR_023520 Daucus carota HOM05D007280 ORTHO05D009108 1.5e-99 367.9 418 46.4
MD13G1010900 Malus domestica HOM05D007280 ORTHO05D009108 2.6e-99 367.1 430 46.5
MD16G1008400 Malus domestica HOM05D007280 ORTHO05D009108 3.8e-98 363.2 423 47.0
PGSC0003DMG400031369 Solanum tuberosum HOM05D007280 ORTHO05D009108 1.9e-97 360.9 439 46.5
FAN12G0470 Fragaria x ananassa HOM05D007280 ORTHO05D009108 5.5e-97 359.4 426 47.9
FvH4_4g36140 Fragaria vesca HOM05D007280 ORTHO05D009108 2.1e-96 357.5 431 47.3
Rhsim04G0168900 Rhododendron simsii HOM05D007280 ORTHO05D009108 3.6e-96 356.7 436 47.0
TWI74G1184 Tripterygium wilfordii HOM05D007280 ORTHO05D009108 3.6e-96 356.7 389 46.8
FAN07G2371 Fragaria x ananassa HOM05D007280 ORTHO05D009108 4.7e-96 356.3 408 47.8
HanXRQChr16g0526501 Helianthus annuus HOM05D007280 ORTHO05D009108 1.8e-95 354.4 444 44.6
Ciclev10004581m.g Citrus clementina HOM05D007280 ORTHO05D009108 1.1e-94 351.7 410 48.5
Gohir.D06G095050 Gossypium hirsutum HOM05D007280 ORTHO05D009108 2.8e-93 347.1 431 46.2
CAN.G458.1 Capsicum annuum HOM05D007280 ORTHO05D009108 1.8e-92 344.4 447 45.2
Solyc04g008570.4 Solanum lycopersicum HOM05D007280 ORTHO05D009108 1.8e-92 344.4 427 45.9
Sopen04g003730 Solanum pennellii HOM05D007280 ORTHO05D009108 5.3e-92 342.8 427 45.2
Sabra10G0071200 Salix brachista HOM05D007280 ORTHO05D009108 5.9e-91 339.3 418 45.7
Sabra08G0108600 Salix brachista HOM05D007280 ORTHO05D009108 7.7e-91 339.0 412 46.6
Eucgr.B02618 Eucalyptus grandis HOM05D007280 ORTHO05D009108 1.0e-90 338.6 366 46.7
MSTRG.17728 Avicennia marina HOM05D007280 ORTHO05D009108 7.2e-89 332.4 443 42.9
Gohir.D09G108900 Gossypium hirsutum HOM05D007280 ORTHO05D009108 1.0e-87 328.6 420 45.5
THA.LOC104819105 Tarenaya hassleriana HOM05D007280 ORTHO05D009108 1.8e-87 327.8 397 45.3
Duzib168G0083 Durio zibethinus HOM05D007280 ORTHO05D009108 5.2e-87 326.2 407 45.9
Gohir.A09G112200 Gossypium hirsutum HOM05D007280 ORTHO05D009108 8.8e-87 325.5 362 47.5
Gorai.006G126500 Gossypium raimondii HOM05D007280 ORTHO05D009108 5.7e-86 322.8 420 44.5
Lsat_1_v5_gn_3_27640 Lactuca sativa HOM05D007280 ORTHO05D009108 1.3e-85 321.6 372 43.5
PGR044G2110 Punica granatum HOM05D007280 ORTHO05D009108 1.4e-84 318.2 425 44.7
ECA246G2688 Erigeron canadensis HOM05D007280 ORTHO05D009108 2.9e-82 310.5 350 45.4
Aa31sc65G20 Aethionema arabicum HOM05D007280 ORTHO05D009108 4.2e-81 306.6 372 45.4
QL03p041451 Quercus lobata HOM05D007280 ORTHO05D009108 1.2e-80 305.1 326 54.0
Thhalv10016019m.g Eutrema salsugineum HOM05D007280 ORTHO05D009108 1.6e-80 304.7 412 43.4
GSVIVG01010259001 Vitis vinifera HOM05D007280 ORTHO05D009108 1.8e-79 301.2 358 46.9
Potri.008G142900 Populus trichocarpa HOM05D007280 ORTHO05D009108 8.8e-79 298.9 416 42.8
Sp6g30250 Schrenkiella parvula HOM05D007280 ORTHO05D009108 2.2e-77 294.3 391 42.5
Carub.0006s1195 Capsella rubella HOM05D007280 ORTHO05D009108 7.7e-75 285.8 390 41.8
SalBow3G1417 Salvia bowleyana HOM05D007280 ORTHO05D009108 7.7e-75 285.8 385 40.3
Ah.13g070140 Amaranthus hybridus HOM05D007280 ORTHO05D009108 1.0e-74 285.4 351 43.6
ATR0705G126 Amborella trichopoda HOM05D007280 ORTHO05D009108 1.0e-74 285.4 383 41.5
Manes.17G093400 Manihot esculenta HOM05D007280 ORTHO05D009108 2.2e-74 284.3 332 48.5
AT5G13770 Arabidopsis thaliana HOM05D007280 ORTHO05D009108 8.5e-74 282.3 388 42.0
ClCG01G006970 Citrullus lanatus HOM05D007280 ORTHO05D009108 5.5e-73 279.6 325 47.4
AL6G24390 Arabidopsis lyrata HOM05D007280 ORTHO05D009108 7.2e-73 279.3 388 41.5
BraA02t05191Z Brassica rapa HOM05D007280 ORTHO05D009108 9.5e-73 278.9 375 42.1
A02p02170 Brassica napus HOM05D007280 ORTHO05D009108 2.7e-72 277.3 375 41.9
C02p06420 Brassica napus HOM05D007280 ORTHO05D009108 1.8e-71 274.6 376 42.0
BolC2t06588H Brassica oleracea HOM05D007280 ORTHO05D009108 1.8e-71 274.6 376 42.0
CsaV3_5G017390 Cucumis sativus L. HOM05D007280 ORTHO05D009108 6.8e-71 272.7 324 47.2
Sed0008466 Sechium edule HOM05D007280 ORTHO05D009108 1.7e-69 268.1 324 46.6
MELO3C027064.2 Cucumis melo HOM05D007280 ORTHO05D009108 4.9e-69 266.5 280 49.3
TAR622G0173 Trochodendron aralioides HOM05D007280 ORTHO05D009108 2.4e-68 264.2 320 47.8
Os04g0583101 Oryza sativa ssp. japonica HOM05D007280 ORTHO05D009108 7.0e-68 262.7 338 40.2
Migut.N02514 Erythranthe guttata HOM05D007280 ORTHO05D009108 1.2e-67 261.9 382 38.7
BcaNung04186 Brassica carinata HOM05D007280 ORTHO05D009108 4.5e-67 260.0 386 39.4
Zm00001eb072910 Zea mays HOM05D007280 ORTHO05D009108 3.3e-65 253.8 338 39.9
CiPaw.05G161600 Carya illinoinensis HOM05D007280 ORTHO05D009108 9.8e-62 242.3 331 43.8
AUR62019383 Chenopodium quinoa HOM05D007280 ORTHO05D009108 1.7e-61 241.5 371 38.5
PSO782G1316 Papaver somniferum HOM05D007280 ORTHO05D009108 2.9e-61 240.7 320 43.1
AUR62006107 Chenopodium quinoa HOM05D007280 ORTHO05D009108 3.2e-60 237.3 369 37.9
CDE08G0845 Ceratophyllum demersum HOM05D007280 ORTHO05D009108 4.6e-59 233.4 341 40.8
Nitab4.5_0003882g0050 Nicotiana tabacum HOM05D007280 ORTHO05D009108 5.9e-59 233.0 203 57.1
Nitab4.5_0000129g0410 Nicotiana tabacum HOM05D007280 ORTHO05D009108 3.9e-58 230.3 203 56.2
GSVIVG01032336001 Vitis vinifera HOM05D007280 ORTHO05D009108 8.6e-58 229.2 254 50.0
PSO063G1027 Papaver somniferum HOM05D007280 ORTHO05D009108 3.3e-57 227.3 321 42.1
Lsat_1_v5_gn_4_26101 Lactuca sativa HOM05D007280 ORTHO05D009108 5.6e-57 226.5 334 39.2
Dinv17118 Davidia involucrata HOM05D007280 ORTHO05D009108 2.8e-56 224.2 201 52.7
COL.COLO4_36459 Corchorus olitorius HOM05D007280 ORTHO05D009108 2.3e-55 221.1 323 41.2
Oeu006355.1 Olea europaea HOM05D007280 ORTHO05D009108 6.8e-55 219.5 322 40.1
MBI03_g37599_MAGBIO Magnolia biondii HOM05D007280 ORTHO05D009108 7.5e-54 216.1 419 32.5
Ah.07g205740 Amaranthus hybridus HOM05D007280 ORTHO05D009108 2.9e-53 214.2 356 37.9
QL11p025101 Quercus lobata HOM05D007280 ORTHO05D009108 2.3e-50 204.5 206 53.4
CDE04G3512 Ceratophyllum demersum HOM05D007280 ORTHO05D009108 5.6e-49 199.9 343 37.3
Aqoxy3G04194 Aquilegia oxysepala HOM05D007280 ORTHO05D009108 1.6e-48 198.4 278 42.8
RcHm_v2.0_Chr4g0445881 Rosa chinensis HOM05D007280 ORTHO05D009108 3.6e-48 197.2 431 35.0
Ciclev10006779m.g Citrus clementina HOM05D007280 ORTHO05D009108 4.0e-47 193.7 197 52.8
Sc14g0006690 Simmondsia chinensis HOM05D007280 ORTHO05D009108 3.9e-42 177.2 231 41.1
CARHR199670 Cardamine hirsuta HOM05D007280 ORTHO05D009108 2.5e-41 174.5 348 34.2
ECA234G4111 Erigeron canadensis HOM05D007280 ORTHO05D009108 3.8e-37 160.6 135 60.0
QL11p025168 Quercus lobata HOM05D007280 ORTHO05D009108 2.8e-32 144.4 120 55.8
Atru.chr11.1056 Acer truncatum HOM05D007280 ORTHO05D009108 2.4e-23 114.8 76 71.1
SEGI_25718 Sequoiadendron giganteum HOM05D007280 ORTHO05D009108 1.5e-09 68.9 137 27.7
SalBow3G4579 Salvia bowleyana HOM05D007280 ORTHO05D009108 8.2e-08 63.2 75 44.0
MBI03_g47433_MAGBIO Magnolia biondii HOM05D007280 ORTHO05D009108 3.1e-07 61.2 41 63.4


User provided reference genes

Program Settings