Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g032430 Medicago truncatula HOM05D006178 ORTHO05D007504 3.7e-182 641.3 311 100.0
Psat6g046400 Pisum sativum HOM05D006178 ORTHO05D007504 6.0e-164 580.9 311 89.4
TPR.G36937 Trifolium pratense HOM05D006178 ORTHO05D007504 1.2e-161 573.2 312 89.1
Ca_12542_v3 Cicer arietinum L. HOM05D006178 ORTHO05D007504 1.6e-156 556.2 304 88.2
Lj2g0017740 Lotus japonicus HOM05D006178 ORTHO05D007504 5.6e-154 547.7 309 84.1
Glyma.02G085100 Glycine max HOM05D006178 ORTHO05D007504 1.9e-149 532.7 309 83.2
Lalb_Chr17g0338441 Lupinus albus HOM05D006178 ORTHO05D007504 5.8e-143 511.1 289 83.0
MD13G1020300 Malus domestica HOM05D006178 ORTHO05D007504 1.1e-133 480.3 307 73.6
arahy.Tifrunner.gnm1.ann1.M99K8C Arachis hypogaea HOM05D006178 ORTHO05D007504 7.1e-133 477.6 308 72.1
arahy.Tifrunner.gnm1.ann1.56CUD8 Arachis hypogaea HOM05D006178 ORTHO05D007504 3.5e-132 475.3 308 71.8
CiPaw.05G188700 Carya illinoinensis HOM05D006178 ORTHO05D007504 3.5e-132 475.3 307 71.3
FvH4_4g33550 Fragaria vesca HOM05D006178 ORTHO05D007504 1.3e-131 473.4 305 72.8
FAN07G2930 Fragaria x ananassa HOM05D006178 ORTHO05D007504 6.7e-131 471.1 305 72.8
Phvul.003G019200 Phaseolus vulgaris HOM05D006178 ORTHO05D007504 9.6e-130 467.2 311 73.3
FAN12G1191 Fragaria x ananassa HOM05D006178 ORTHO05D007504 4.8e-129 464.9 317 70.3
FAN22G2090 Fragaria x ananassa HOM05D006178 ORTHO05D007504 1.1e-128 463.8 317 70.0
QL03p035908 Quercus lobata HOM05D006178 ORTHO05D007504 5.3e-128 461.5 335 66.0
CsaV3_5G015780 Cucumis sativus L. HOM05D006178 ORTHO05D007504 1.2e-127 460.3 306 67.0
FAN17G1905 Fragaria x ananassa HOM05D006178 ORTHO05D007504 5.8e-127 458.0 316 69.6
Prupe.1G333400 Prunus persica HOM05D006178 ORTHO05D007504 5.8e-127 458.0 315 68.9
Ciclev10015964m.g Citrus clementina HOM05D006178 ORTHO05D007504 2.2e-126 456.1 310 68.1
Atru.chr11.922 Acer truncatum HOM05D006178 ORTHO05D007504 1.4e-125 453.4 302 69.2
TWI74G1561 Tripterygium wilfordii HOM05D006178 ORTHO05D007504 2.7e-124 449.1 304 67.4
Thecc.02G292800 Theobroma cacao HOM05D006178 ORTHO05D007504 3.5e-124 448.7 308 67.5
Duzib251G0568 Durio zibethinus HOM05D006178 ORTHO05D007504 6.0e-124 448.0 308 67.2
Hma1.2p1_0277F.1_g111690 Hydrangea macrophylla HOM05D006178 ORTHO05D007504 5.1e-123 444.9 307 68.1
GSVIVG01011660001 Vitis vinifera HOM05D006178 ORTHO05D007504 5.1e-123 444.9 310 65.2
Actinidia38440 Actinidia chinensis HOM05D006178 ORTHO05D007504 8.7e-123 444.1 307 68.1
MELO3C016656.2 Cucumis melo HOM05D006178 ORTHO05D007504 1.5e-122 443.4 316 64.9
Potri.010G106400 Populus trichocarpa HOM05D006178 ORTHO05D007504 4.3e-122 441.8 305 69.5
ClCG09G011820 Citrullus lanatus HOM05D006178 ORTHO05D007504 3.4e-119 432.2 298 66.1
THA.LOC104821906 Tarenaya hassleriana HOM05D006178 ORTHO05D007504 5.8e-119 431.4 301 68.8
PGSC0003DMG400028747 Solanum tuberosum HOM05D006178 ORTHO05D007504 1.0e-118 430.6 302 65.2
Cpa.g.sc2.193 Carica papaya HOM05D006178 ORTHO05D007504 8.4e-118 427.6 308 64.6
Gohir.D01G139900 Gossypium hirsutum HOM05D006178 ORTHO05D007504 4.2e-117 425.2 309 62.8
Solyc07g008850.3 Solanum lycopersicum HOM05D006178 ORTHO05D007504 4.2e-117 425.2 310 62.9
Cc11_g07280 Coffea canephora HOM05D006178 ORTHO05D007504 5.5e-117 424.9 305 62.3
COL.COLO4_16591 Corchorus olitorius HOM05D006178 ORTHO05D007504 1.6e-116 423.3 292 67.5
Sopen07g004780 Solanum pennellii HOM05D006178 ORTHO05D007504 2.1e-116 422.9 314 63.1
Eucgr.B02675 Eucalyptus grandis HOM05D006178 ORTHO05D007504 4.6e-116 421.8 300 65.7
Gorai.002G172000 Gossypium raimondii HOM05D006178 ORTHO05D007504 4.6e-116 421.8 309 62.5
CAN.G511.14 Capsicum annuum HOM05D006178 ORTHO05D007504 1.8e-115 419.9 301 64.1
Gohir.A01G146700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.8e-115 419.9 309 61.8
Thhalv10007963m.g Eutrema salsugineum HOM05D006178 ORTHO05D007504 2.3e-115 419.5 298 66.1
Manes.15G134200 Manihot esculenta HOM05D006178 ORTHO05D007504 3.0e-115 419.1 312 65.4
EL10Ac2g02672 Beta vulgaris HOM05D006178 ORTHO05D007504 5.1e-115 418.3 303 63.7
AT1G24793 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 1.5e-114 416.8 302 66.2
AT1G25054 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 1.5e-114 416.8 302 66.2
AT1G25145 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 1.5e-114 416.8 302 66.2
AT1G25210 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 1.5e-114 416.8 302 66.2
PSO478G4000 Papaver somniferum HOM05D006178 ORTHO05D007504 1.9e-114 416.4 303 62.0
DCAR_007330 Daucus carota HOM05D006178 ORTHO05D007504 5.7e-114 414.8 291 66.3
Sp1g23080 Schrenkiella parvula HOM05D006178 ORTHO05D007504 5.7e-114 414.8 305 65.2
Sc04g0008610 Simmondsia chinensis HOM05D006178 ORTHO05D007504 9.7e-114 414.1 309 63.8
Lj6C738G3 Lonicera japonica HOM05D001486 ORTHO05D007504 3.7e-113 412.1 276 68.1
Ah.02g128010 Amaranthus hybridus HOM05D006178 ORTHO05D007504 6.3e-113 411.4 303 62.4
Migut.E00482 Erythranthe guttata HOM05D006178 ORTHO05D007504 8.2e-113 411.0 308 62.7
PSO017G4246 Papaver somniferum HOM05D006178 ORTHO05D007504 8.2e-113 411.0 303 61.4
Carub.0001s2539 Capsella rubella HOM05D006178 ORTHO05D007504 4.1e-112 408.7 298 65.4
AL1G40190 Arabidopsis lyrata HOM05D006178 ORTHO05D007504 4.5e-111 405.2 302 64.9
A08p26780 Brassica napus HOM05D006178 ORTHO05D007504 4.5e-111 405.2 298 64.8
SalBow2G2905 Salvia bowleyana HOM05D006178 ORTHO05D007504 1.3e-110 403.7 312 60.9
BcaB03g12042 Brassica carinata HOM05D006178 ORTHO05D007504 6.5e-110 401.4 294 65.3
Oeu044010.1 Olea europaea HOM05D006178 ORTHO05D007504 1.4e-109 400.2 291 64.9
BraA08t34624Z Brassica rapa HOM05D006178 ORTHO05D007504 1.2e-108 397.1 306 63.4
C03p73180 Brassica napus HOM05D006178 ORTHO05D007504 4.6e-108 395.2 333 59.8
BolC3t19616H Brassica oleracea HOM05D006178 ORTHO05D007504 4.6e-108 395.2 333 59.8
BcaC01g01670 Brassica carinata HOM05D006178 ORTHO05D007504 6.1e-108 394.8 331 59.5
ECA246G2474 Erigeron canadensis HOM05D006178 ORTHO05D007504 1.0e-107 394.0 310 60.6
Lsat_1_v5_gn_3_53481 Lactuca sativa HOM05D006178 ORTHO05D007504 2.0e-106 389.8 294 62.9
HanXRQChr15g0476731 Helianthus annuus HOM05D006178 ORTHO05D007504 3.3e-106 389.0 305 58.7
Aa31LG7G9330 Aethionema arabicum HOM05D006178 ORTHO05D007504 2.8e-105 386.0 302 62.6
AUR62038473 Chenopodium quinoa HOM05D006178 ORTHO05D007504 4.8e-105 385.2 290 60.3
AUR62014248 Chenopodium quinoa HOM05D006178 ORTHO05D007504 1.1e-104 384.0 290 60.3
Peaxi162Scf00937g00336 Petunia axillaris HOM05D006178 ORTHO05D007504 1.8e-104 383.3 292 60.6
MBI13_g29562_MAGBIO Magnolia biondii HOM05D006178 ORTHO05D007504 1.2e-103 380.6 309 59.5
Hund24927 Selenicereus undatus HOM05D006178 ORTHO05D007504 3.2e-101 372.5 387 50.1
Aqoxy3G00007 Aquilegia oxysepala HOM05D006178 ORTHO05D007504 7.9e-100 367.9 314 56.4
Haze_10879 Corylus avellana HOM05D006178 ORTHO05D007504 9.7e-98 360.9 243 67.5
Os03g0223900 Oryza sativa ssp. japonica HOM05D006178 ORTHO05D007504 1.8e-96 356.7 303 57.4
Dinv07729 Davidia involucrata HOM05D006178 ORTHO05D007504 6.5e-94 348.2 243 65.4
Zm00001eb009130 Zea mays HOM05D006178 ORTHO05D007504 1.0e-91 340.9 307 57.0
RcHm_v2.0_Chr7g0235121 Rosa chinensis HOM05D006178 ORTHO05D007504 2.3e-91 339.7 209 76.1
ATR0753G153 Amborella trichopoda HOM05D006178 ORTHO05D007504 1.5e-90 337.0 283 58.7
Sabra10G0077800 Salix brachista HOM05D006178 ORTHO05D007504 2.8e-89 332.8 272 61.8
vmacro00552 Vaccinium macrocarpon HOM05D006178 ORTHO05D007504 2.6e-87 326.2 322 53.4
CANSAT01G0234 Cannabis sativa HOM05D006178 ORTHO05D007504 5.9e-87 325.1 245 63.7
Sed0021590 Sechium edule HOM05D006178 ORTHO05D007504 2.5e-85 319.7 223 63.7
SGA_v2.0_scaffold23G10206 Striga asiatica HOM05D006178 ORTHO05D007504 7.5e-82 308.1 279 54.8
Pp3c3_1850 Physcomitrium patens HOM05D006178 ORTHO05D007504 2.8e-81 306.2 293 52.9
HPP92_013128 Vanilla planifolia HOM05D006178 ORTHO05D007504 1.4e-80 303.9 266 56.8
Mapoly0012s0127 Marchantia polymorpha HOM05D006178 ORTHO05D007504 8.5e-78 294.7 299 50.2
unitig_22.g5599 Utricularia gibba HOM05D000369 ORTHO05D000253 9.4e-77 291.2 307 52.1
Nitab4.5_0000018g0160 Nicotiana tabacum HOM05D006178 ORTHO05D007504 1.7e-73 280.4 216 62.0
HPP92_013158 Vanilla planifolia HOM05D006178 ORTHO05D007504 5.2e-67 258.8 205 59.0
SMO232G0119 Selaginella moellendorffii HOM05D006178 ORTHO05D007504 8.9e-67 258.1 293 46.8
Nitab4.5_0009975g0010 Nicotiana tabacum HOM05D006178 ORTHO05D007504 1.2e-66 257.7 240 53.8
CSS0005024 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 1.8e-64 250.4 197 61.4
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 7.0e-64 248.4 229 53.3
CSS0001732 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 2.0e-63 246.9 189 61.9
CBR_g12524 Chara braunii HOM05D006178 ORTHO05D007504 1.1e-61 241.1 243 50.6
Gohir.D08G117400 Gossypium hirsutum HOM05D006178 ORTHO05D007504 3.6e-60 236.1 191 55.5
Gorai.001G151600 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.0e-59 234.6 188 55.9
Gohir.D13G135551 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.4e-59 234.2 191 55.5
Gohir.D10G193800 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.3e-59 233.4 188 56.4
Gohir.D07G139600 Gossypium hirsutum HOM05D006178 ORTHO05D007504 4.0e-59 232.6 188 55.9
Gorai.010G050600 Gossypium raimondii HOM05D006178 ORTHO05D007504 3.4e-58 229.6 188 55.9
TAR629G3300 Trochodendron aralioides HOM05D006178 ORTHO05D007504 9.8e-58 228.0 189 58.2
Gohir.D11G251901 Gossypium hirsutum HOM05D006178 ORTHO05D007504 7.3e-53 211.8 188 53.2
MCO09G291 Micromonas commoda HOM05D006178 ORTHO05D007504 6.4e-49 198.7 283 41.7
Gorai.005G149500 Gossypium raimondii HOM05D006178 ORTHO05D007504 3.2e-48 196.4 191 48.7
TAR629G1361 Trochodendron aralioides HOM05D006178 ORTHO05D007504 9.5e-45 184.9 108 77.8
PRCOL_00001866 Prasinoderma coloniale HOM05D006178 ORTHO05D007504 2.1e-44 183.7 300 38.3
Gorai.005G145500 Gossypium raimondii HOM05D006178 ORTHO05D007504 6.2e-44 182.2 198 47.0
CSS0007559 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 2.0e-42 177.2 102 79.4
CSS0004101 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 4.4e-42 176.0 102 78.4
QL03p035827 Quercus lobata HOM05D006178 ORTHO05D007504 6.0e-39 165.6 111 71.2
SEGI_10880 Sequoiadendron giganteum HOM05D006178 ORTHO05D007504 3.9e-38 162.9 184 44.6
AagrBONN_evm.TU.Sc2ySwM_340.423 Anthoceros agrestis HOM05D006178 ORTHO05D007504 1.1e-37 161.4 197 45.7
Gorai.007G245600 Gossypium raimondii HOM05D006178 ORTHO05D007504 6.8e-35 152.1 119 58.0
Gohir.D11G228700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.6e-34 150.2 119 57.1
Cre16.g653350 Chlamydomonas reinhardtii HOM05D006178 ORTHO05D007504 3.4e-34 149.8 275 35.3
Gorai.009G391300 Gossypium raimondii HOM05D006178 ORTHO05D007504 2.9e-33 146.7 108 63.0
CARHR026360 Cardamine hirsuta HOM05D006178 ORTHO05D007504 4.9e-33 146.0 125 57.6
Nn3g18364 Nelumbo nucifera HOM05D006178 ORTHO05D007504 4.3e-29 132.9 112 54.5
Ca_29306_v3 Cicer arietinum L. HOM05D001616 ORTHO05D007504 2.8e-28 130.2 292 32.5
Nn3g18365 Nelumbo nucifera HOM05D006178 ORTHO05D007504 8.4e-25 118.6 65 78.5
Glyma.13G258800 Glycine max HOM05D006178 ORTHO05D007504 8.7e-22 108.6 77 68.8
Glyma.13G368200 Glycine max HOM05D006178 ORTHO05D007504 8.7e-22 108.6 77 68.8
Sed0025662 Sechium edule HOM05D006178 ORTHO05D007504 2.7e-15 87.0 45 80.0
MCO05G527 Micromonas commoda HOM05D014289 ORTHO05D018957 2.1e-07 60.8 95 38.9
Gohir.D08G060150 Gossypium hirsutum HOM05D006178 ORTHO05D007504 8.7e-06 55.5 39 61.5


User provided reference genes

Program Settings