Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g032120 Medicago truncatula HOM05D006460 ORTHO05D008143 3.2e-275 951.0 459 100.0
Ca_12543_v3 Cicer arietinum L. HOM05D006460 ORTHO05D008143 1.9e-246 855.5 456 90.1
Psat6g046360 Pisum sativum HOM05D006460 ORTHO05D008143 4.6e-245 850.9 459 88.9
TPR.G36866 Trifolium pratense HOM05D006460 ORTHO05D008143 3.1e-241 838.2 494 83.6
Lj2g0013221 Lotus japonicus HOM05D006460 ORTHO05D008143 2.0e-224 782.3 458 82.3
VMungo1215G1636 Vigna mungo HOM05D006460 ORTHO05D008143 2.6e-224 781.9 458 82.5
Glyma.07G170000 Glycine max HOM05D006460 ORTHO05D008143 1.4e-222 776.2 458 82.3
Phvul.003G019300 Phaseolus vulgaris HOM05D006460 ORTHO05D008143 3.8e-215 751.5 460 80.9
Lalb_Chr17g0338451 Lupinus albus HOM05D006460 ORTHO05D008143 2.0e-208 729.2 459 77.1
arahy.Tifrunner.gnm1.ann1.N25L3F Arachis hypogaea HOM05D006460 ORTHO05D008143 1.2e-205 719.9 485 72.0
arahy.Tifrunner.gnm1.ann1.R72PZK Arachis hypogaea HOM05D006460 ORTHO05D008143 3.0e-204 715.3 492 71.1
QL12p034319 Quercus lobata HOM05D006460 ORTHO05D008143 2.6e-176 622.5 468 65.0
MD09G1293200 Malus domestica HOM05D006460 ORTHO05D008143 7.4e-171 604.4 463 62.2
Potri.002G189800 Populus trichocarpa HOM05D006460 ORTHO05D008143 6.3e-170 601.3 460 63.9
CiPaw.04G089700 Carya illinoinensis HOM05D006460 ORTHO05D008143 2.4e-169 599.4 462 65.8
Haze_05122 Corylus avellana HOM05D006460 ORTHO05D008143 3.1e-169 599.0 460 64.1
Prupe.3G004500 Prunus persica HOM05D006460 ORTHO05D008143 9.1e-169 597.4 470 63.8
Ciclev10001046m.g Citrus clementina HOM05D006460 ORTHO05D008143 1.3e-167 593.6 458 65.1
Sabra02G0165800 Salix brachista HOM05D006460 ORTHO05D008143 2.9e-167 592.4 460 63.3
Atru.chr5.915 Acer truncatum HOM05D006460 ORTHO05D008143 8.5e-167 590.9 453 63.1
Eucgr.H00886 Eucalyptus grandis HOM05D006460 ORTHO05D008143 1.9e-166 589.7 453 64.7
Duzib138G1376 Durio zibethinus HOM05D006460 ORTHO05D008143 3.3e-163 578.9 456 63.2
FvH4_1g26500 Fragaria vesca HOM05D006460 ORTHO05D008143 7.5e-163 577.8 468 60.3
GSVIVG01028196001 Vitis vinifera HOM05D006460 ORTHO05D008143 9.7e-163 577.4 458 62.2
CANSAT56G1882 Cannabis sativa HOM05D006460 ORTHO05D008143 2.2e-162 576.2 468 62.4
FAN28G1427 Fragaria x ananassa HOM05D006460 ORTHO05D008143 3.7e-162 575.5 471 59.7
RcHm_v2.0_Chr3g0486571 Rosa chinensis HOM05D006460 ORTHO05D008143 9.1e-161 570.9 468 60.3
TAR362G0080 Trochodendron aralioides HOM05D006460 ORTHO05D008143 9.1e-161 570.9 476 61.8
Gorai.001G146600 Gossypium raimondii HOM05D006460 ORTHO05D008143 1.6e-160 570.1 464 61.9
Gohir.D07G134900 Gossypium hirsutum HOM05D006460 ORTHO05D008143 3.5e-160 568.9 466 61.6
TWI14G0400 Tripterygium wilfordii HOM05D006460 ORTHO05D008143 3.5e-160 568.9 459 63.2
COL.COLO4_23162 Corchorus olitorius HOM05D006460 ORTHO05D008143 2.2e-159 566.2 457 61.9
Sc17g0000180 Simmondsia chinensis HOM05D006460 ORTHO05D008143 9.4e-158 560.8 457 60.4
PGR083G0788 Punica granatum HOM05D006460 ORTHO05D008143 1.8e-156 556.6 461 60.5
Nn4g25417 Nelumbo nucifera HOM05D006460 ORTHO05D008143 4.0e-156 555.4 476 59.0
Sed0027463 Sechium edule HOM05D006460 ORTHO05D008143 8.8e-156 554.3 459 59.9
Cpa.g.sc543.2 Carica papaya HOM05D006460 ORTHO05D008143 8.3e-154 547.7 465 59.4
Thhalv10028644m.g Eutrema salsugineum HOM05D006460 ORTHO05D008143 1.1e-153 547.4 460 58.0
Thhalv10028645m.g Eutrema salsugineum HOM05D006460 ORTHO05D008143 1.1e-153 547.4 460 58.0
Actinidia21358 Actinidia chinensis HOM05D006460 ORTHO05D008143 1.4e-153 547.0 474 58.9
CSS0037090 Camellia sinensis var. sinensis HOM05D006460 ORTHO05D008143 5.4e-153 545.0 483 56.9
Manes.05G010900 Manihot esculenta HOM05D006460 ORTHO05D008143 7.7e-152 541.2 440 60.7
Thecc.01G322200 Theobroma cacao HOM05D006460 ORTHO05D008143 1.7e-151 540.0 461 61.0
ClCG09G004700 Citrullus lanatus HOM05D006460 ORTHO05D008143 2.2e-151 539.7 467 58.5
THA.LOC104801320 Tarenaya hassleriana HOM05D006460 ORTHO05D008143 6.5e-151 538.1 454 58.8
Carub.0006s3536 Capsella rubella HOM05D006460 ORTHO05D008143 1.9e-150 536.6 458 58.3
Oeu002575.1 Olea europaea HOM05D006460 ORTHO05D008143 1.9e-150 536.6 461 59.2
BcaB01g02385 Brassica carinata HOM05D006460 ORTHO05D008143 1.6e-149 533.5 456 57.9
AL6G51420 Arabidopsis lyrata HOM05D006460 ORTHO05D008143 3.6e-149 532.3 460 58.3
Sp6g01720 Schrenkiella parvula HOM05D006460 ORTHO05D008143 4.7e-149 531.9 458 58.1
CARHR249840 Cardamine hirsuta HOM05D006460 ORTHO05D008143 8.0e-149 531.2 452 58.8
A03p31440 Brassica napus HOM05D006460 ORTHO05D008143 1.0e-148 530.8 458 57.6
AUR62024570 Chenopodium quinoa HOM05D006460 ORTHO05D008143 1.4e-148 530.4 454 57.7
Solyc01g068050.3 Solanum lycopersicum HOM05D006460 ORTHO05D008143 1.8e-148 530.0 458 57.4
HanXRQChr13g0414441 Helianthus annuus HOM05D006460 ORTHO05D008143 2.3e-148 529.6 453 59.4
vmacro02372 Vaccinium macrocarpon HOM05D006460 ORTHO05D008143 2.3e-148 529.6 518 53.7
AT4G01880 Arabidopsis thaliana HOM05D006460 ORTHO05D008143 4.0e-148 528.9 459 58.8
Cc01_g21920 Coffea canephora HOM05D006460 ORTHO05D008143 5.2e-148 528.5 464 57.3
PGSC0003DMG400005211 Solanum tuberosum HOM05D006460 ORTHO05D008143 5.2e-148 528.5 457 58.0
Lj1C11T12 Lonicera japonica HOM05D006460 ORTHO05D008143 6.8e-148 528.1 469 56.3
C03p38430 Brassica napus HOM05D006460 ORTHO05D008143 1.5e-147 526.9 460 57.6
BraA03t12325Z Brassica rapa HOM05D006460 ORTHO05D008143 2.0e-147 526.6 461 57.0
FAN19G0891 Fragaria x ananassa HOM05D006460 ORTHO05D008143 2.6e-147 526.2 468 56.8
AUR62011736 Chenopodium quinoa HOM05D006460 ORTHO05D008143 3.4e-147 525.8 454 57.0
BcaC01g06799 Brassica carinata HOM05D006460 ORTHO05D008143 4.4e-147 525.4 460 57.2
BolC3t16117H Brassica oleracea HOM05D006460 ORTHO05D008143 4.4e-147 525.4 460 57.2
Aqoxy5G02768 Aquilegia oxysepala HOM05D006460 ORTHO05D008143 1.7e-146 523.5 466 55.2
Migut.D00030 Erythranthe guttata HOM05D006460 ORTHO05D008143 1.7e-146 523.5 460 58.0
FAN26G0500 Fragaria x ananassa HOM05D006460 ORTHO05D008143 1.7e-146 523.5 471 56.1
Gohir.A07G130500 Gossypium hirsutum HOM05D006460 ORTHO05D008143 1.7e-146 523.5 464 58.8
CAN.G100.27 Capsicum annuum HOM05D006460 ORTHO05D008143 1.1e-145 520.8 459 57.7
DCAR_012316 Daucus carota HOM05D006460 ORTHO05D008143 5.4e-145 518.5 465 55.5
Cfa004883 Carpinus fangiana HOM05D006460 ORTHO05D008143 5.9e-144 515.0 414 63.5
SalBow6G2760 Salvia bowleyana HOM05D006460 ORTHO05D008143 2.3e-143 513.1 459 55.6
MSTRG.21724 Avicennia marina HOM05D006460 ORTHO05D008143 6.6e-143 511.5 461 57.0
Aa31LG5G1480 Aethionema arabicum HOM05D006460 ORTHO05D008143 1.2e-141 507.3 487 54.6
SGA_v2.0_scaffold417G51258 Striga asiatica HOM05D006460 ORTHO05D008143 2.3e-140 503.1 464 56.5
CDE08G1018 Ceratophyllum demersum HOM05D006460 ORTHO05D008143 4.0e-140 502.3 468 56.4
Nitab4.5_0000222g0270 Nicotiana tabacum HOM05D006460 ORTHO05D008143 6.8e-140 501.5 490 54.1
Lsat_1_v5_gn_8_167341 Lactuca sativa HOM05D006460 ORTHO05D008143 4.9e-138 495.4 452 57.1
PSO357G0369 Papaver somniferum HOM05D006460 ORTHO05D008143 8.3e-138 494.6 458 53.9
Rhsim13G0001100 Rhododendron simsii HOM05D006460 ORTHO05D008143 2.4e-137 493.0 418 60.0
Hund09677 Selenicereus undatus HOM05D006460 ORTHO05D008143 4.1e-137 492.3 458 54.1
ATR0796G118 Amborella trichopoda HOM05D006460 ORTHO05D008143 2.6e-131 473.0 489 49.7
EL10As5g23582 Beta vulgaris HOM05D006460 ORTHO05D008143 3.4e-131 472.6 469 53.7
HPP92_010877 Vanilla planifolia HOM05D000746 ORTHO05D000573 7.0e-129 464.9 453 51.0
Eucgr.L00887 Eucalyptus grandis HOM05D006460 ORTHO05D008143 1.2e-128 464.2 347 66.9
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 1.5e-126 457.2 420 56.0
MELO3C023610.2 Cucumis melo HOM05D006460 ORTHO05D008143 3.6e-125 452.6 444 52.7
Nitab4.5_0002994g0020 Nicotiana tabacum HOM05D006460 ORTHO05D008143 1.0e-119 434.5 486 49.2
CsaV3_7G030430 Cucumis sativus L. HOM05D006460 ORTHO05D008143 1.2e-117 427.6 367 59.4
CSS0008981 Camellia sinensis var. sinensis HOM05D006460 ORTHO05D008143 3.1e-116 422.9 357 59.7
PSO170G6216 Papaver somniferum HOM05D006460 ORTHO05D008143 5.2e-116 422.2 389 54.8
PSO384G3244 Papaver somniferum HOM05D006460 ORTHO05D008143 2.0e-115 420.2 388 54.6
Ah.11g045760 Amaranthus hybridus HOM05D006460 ORTHO05D008143 7.8e-112 408.3 458 49.8
Dinv33158 Davidia involucrata HOM05D001974 ORTHO05D001995 8.1e-109 398.3 332 59.3
Pp3c21_16200 Physcomitrium patens HOM05D006460 ORTHO05D008143 2.2e-106 390.2 516 41.7
AagrBONN_evm.TU.Sc2ySwM_228.322 Anthoceros agrestis HOM05D006460 ORTHO05D008143 2.9e-106 389.8 462 44.2
AagrBONN_evm.TU.Sc2ySwM_344.3324 Anthoceros agrestis HOM05D006460 ORTHO05D008143 2.4e-105 386.7 464 43.8
Zm00001eb211340 Zea mays HOM05D006460 ORTHO05D008143 1.2e-104 384.4 370 52.7
Mapoly0095s0050 Marchantia polymorpha HOM05D006460 ORTHO05D008143 2.5e-102 376.7 485 40.8
SMO010G0007 Selaginella moellendorffii HOM05D006460 ORTHO05D008143 7.4e-94 348.6 458 40.2
Sopen01g029980 Solanum pennellii HOM05D006460 ORTHO05D008143 4.9e-90 335.9 290 59.0
Peaxi162Scf00919g00047 Petunia axillaris HOM05D006460 ORTHO05D008143 9.6e-86 321.6 353 49.3
MBI18_g28900_MAGBIO Magnolia biondii HOM05D006460 ORTHO05D008143 6.3e-77 292.4 436 40.1
unitig_578.g16638 Utricularia gibba HOM05D006460 ORTHO05D008143 1.3e-69 268.1 453 36.0
Os03g0833200 Oryza sativa ssp. japonica HOM05D006460 ORTHO05D008143 4.8e-53 213.0 250 47.2
MCO13G012 Micromonas commoda HOM05D006460 ORTHO05D008143 2.7e-48 197.2 462 29.0
SEGI_40178 Sequoiadendron giganteum HOM05D006460 ORTHO05D008143 1.7e-42 177.9 280 39.6
SMO339G0034 Selaginella moellendorffii HOM05D006460 ORTHO05D008143 4.2e-41 173.3 249 39.0
AUR62029044 Chenopodium quinoa HOM05D006460 ORTHO05D008143 3.6e-40 170.2 156 57.1
AUR62036055 Chenopodium quinoa HOM05D006460 ORTHO05D008143 4.7e-40 169.9 156 56.4
PRCOL_00001885 Prasinoderma coloniale HOM05D006460 ORTHO05D008143 1.5e-38 164.9 485 28.2
MD17G1281000 Malus domestica HOM05D006460 ORTHO05D008143 7.7e-35 152.5 237 39.2
QL04p085746 Quercus lobata HOM05D006460 ORTHO05D008143 1.8e-23 114.8 107 54.2
CBR_g49426 Chara braunii HOM05D006460 ORTHO05D008143 1.9e-20 104.8 90 52.2
AagrBONN_evm.TU.Sc2ySwM_228.45 Anthoceros agrestis HOM05D006460 ORTHO05D008143 1.2e-19 102.1 227 32.2
Cre16.g654992 Chlamydomonas reinhardtii HOM05D006460 ORTHO05D008143 2.3e-18 97.8 685 20.3
RcHm_v2.0_Chr7g0232271 Rosa chinensis HOM05D006460 ORTHO05D008143 4.0e-15 87.0 78 56.4
Hund09679 Selenicereus undatus HOM05D006460 ORTHO05D008143 1.1e-12 79.0 59 57.6
AUR62007801 Chenopodium quinoa HOM05D006460 ORTHO05D008143 1.0e-10 72.4 80 47.5
QL05p033637 Quercus lobata HOM05D000101 ORTHO05D000089 1.9e-09 68.2 69 52.2
CDE02G3709 Ceratophyllum demersum HOM05D006460 ORTHO05D008143 1.5e-06 58.5 44 59.1
AUR62043166 Chenopodium quinoa HOM05D006460 ORTHO05D008143 2.6e-06 57.8 64 48.4


User provided reference genes

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